Wall clock time and date at job start Tue Mar 31 2020 14:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00189 * 2 1 4 4 C 1.52993 * 112.84956 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47683 * 170.33001 * 4 3 2 6 6 C 1.53004 * 109.47426 * 50.33050 * 4 3 2 7 7 N 1.46501 * 109.46881 * 290.33078 * 4 3 2 8 8 C 1.34780 * 120.00006 * 205.00162 * 7 4 3 9 9 O 1.21841 * 120.00152 * 359.97438 * 8 7 4 10 10 N 1.33828 * 120.00103 * 179.97438 * 8 7 4 11 11 C 1.32939 * 120.00263 * 179.97438 * 10 8 7 12 12 C 1.41205 * 126.37409 * 359.97438 * 11 10 8 13 13 C 1.34964 * 108.24132 * 180.02562 * 12 11 10 14 14 N 1.36453 * 108.94829 * 0.02562 * 13 12 11 15 15 C 1.46495 * 125.85252 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47426 * 85.02220 * 15 14 13 17 17 H 1.08001 * 119.99569 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99918 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00042 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46928 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46952 * 120.00219 * 20 18 16 23 23 H 1.48499 * 109.47144 * 239.99958 * 20 18 16 24 24 N 1.37418 * 126.38306 * 180.02562 * 11 10 8 25 25 H 0.97005 * 126.35836 * 359.96579 * 24 11 10 26 26 C 1.53789 * 113.61268 * 311.19715 * 3 2 1 27 27 C 1.53957 * 87.01538 * 89.23171 * 26 3 2 28 28 C 1.53770 * 113.61572 * 48.80328 * 3 2 1 29 29 H 1.08993 * 109.47557 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46974 * 300.00181 * 1 2 3 31 31 H 1.08996 * 109.47716 * 59.99547 * 1 2 3 32 32 H 1.09004 * 109.47011 * 299.99914 * 6 4 3 33 33 H 1.08993 * 109.47234 * 60.00119 * 6 4 3 34 34 H 1.09004 * 109.47110 * 180.02562 * 6 4 3 35 35 H 0.96996 * 119.99974 * 25.00119 * 7 4 3 36 36 H 1.08002 * 125.88050 * 0.02562 * 12 11 10 37 37 H 1.07999 * 125.52317 * 179.74257 * 13 12 11 38 38 H 1.08997 * 109.46982 * 205.02317 * 15 14 13 39 39 H 1.09004 * 109.47194 * 325.01878 * 15 14 13 40 40 H 0.97007 * 120.00218 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.61351 * 203.74913 * 26 3 2 42 42 H 1.08998 * 113.61432 * 334.65451 * 26 3 2 43 43 H 1.09005 * 113.53475 * 270.80531 * 27 26 3 44 44 H 1.08995 * 113.73990 * 139.94878 * 27 26 3 45 45 H 1.09003 * 113.61315 * 25.35084 * 28 3 2 46 46 H 1.09001 * 113.61628 * 156.16938 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5399 1.2746 -0.0006 5 1 3.9235 2.2802 -0.1732 6 6 4.0309 0.3439 -1.1114 7 7 4.0189 0.7848 1.2943 8 6 5.2481 1.1244 1.7304 9 8 5.9612 1.8384 1.0475 10 7 5.6856 0.6773 2.9135 11 6 6.8982 1.0119 3.3435 12 6 7.8320 1.8260 2.6658 13 6 8.9394 1.9253 3.4309 14 7 8.7536 1.2054 4.5750 15 6 9.7226 1.0598 5.6641 16 6 9.5951 2.2266 6.6093 17 1 8.8650 2.9991 6.4181 18 6 10.4099 2.3073 7.7186 19 7 11.2986 1.3664 7.9516 20 14 10.2524 3.7540 8.8899 21 1 9.1867 4.6684 8.4066 22 1 9.9015 3.2579 10.2448 23 1 11.5434 4.4854 8.9496 24 7 7.4768 0.6291 4.5297 25 1 7.0760 0.0648 5.2093 26 6 1.4129 2.2457 -1.0603 27 6 0.3747 2.6522 0.0013 28 6 1.4131 2.2456 1.0601 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.6473 -0.6617 -0.9388 33 1 3.6745 0.7084 -2.0748 34 1 5.1207 0.3217 -1.1115 35 1 3.4515 0.2161 1.8377 36 1 7.6853 2.2893 1.7014 37 1 9.8301 2.4806 3.1764 38 1 9.5270 0.1327 6.2028 39 1 10.7314 1.0346 5.2519 40 1 11.8721 1.4233 8.7319 41 1 2.0809 3.0566 -1.3507 42 1 0.9833 1.7232 -1.9149 43 1 -0.5169 2.0251 0.0007 44 1 0.1429 3.7172 0.0033 45 1 0.9835 1.7231 1.9149 46 1 2.0816 3.0558 1.3516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416866441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:39 Heat of formation + Delta-G solvation = 59.794971 kcal Electronic energy + Delta-G solvation = -27094.659477 eV Core-core repulsion = 23216.743450 eV Total energy + Delta-G solvation = -3877.916027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90995 -40.67586 -38.64729 -35.37649 -34.76412 -33.96459 -32.84360 -31.01685 -30.93843 -29.88645 -27.63414 -26.65252 -25.93033 -24.71594 -23.30942 -22.16363 -21.24516 -20.82217 -20.17396 -19.50571 -17.55686 -16.94743 -16.54294 -16.37373 -15.73932 -15.46864 -15.26056 -14.91714 -14.79779 -14.36613 -14.20339 -13.89023 -13.74499 -13.46476 -13.13201 -13.02401 -12.71049 -12.50584 -12.47920 -12.40256 -12.13452 -12.02668 -11.93131 -11.33047 -11.20383 -11.06936 -11.00307 -10.67644 -10.52056 -10.34956 -10.21077 -9.65742 -9.58230 -9.51920 -8.96937 -8.90621 -8.48814 -8.27032 -6.83583 -6.45427 -4.63137 1.85385 2.14485 3.05707 3.15115 3.19373 3.23000 3.47540 3.62898 4.08188 4.23834 4.35228 4.49110 4.54209 4.65920 4.77858 4.83678 5.01492 5.09686 5.17983 5.32309 5.37551 5.43189 5.49354 5.52838 5.57403 5.66253 5.71222 5.77813 5.79275 5.91631 6.01594 6.04729 6.13317 6.33693 6.45742 6.57731 6.59982 6.79793 7.03386 7.20586 7.41042 7.46030 7.54396 7.69371 7.93215 8.37912 8.48408 8.55222 9.07369 9.71209 10.54693 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024773 B = 0.002245 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.993325 B =12467.194078 C =12883.544971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.353 6.353 3 C 0.089 3.911 4 C 0.189 3.811 5 H 0.095 0.905 6 C -0.158 4.158 7 N -0.721 5.721 8 C 0.686 3.314 9 O -0.634 6.634 10 N -0.713 5.713 11 C 0.487 3.513 12 C -0.333 4.333 13 C 0.160 3.840 14 N -0.347 5.347 15 C 0.255 3.745 16 C -0.556 4.556 17 H 0.070 0.930 18 C 0.069 3.931 19 N -0.887 5.887 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.278 1.278 24 N -0.472 5.472 25 H 0.444 0.556 26 C -0.159 4.159 27 C -0.162 4.162 28 C -0.159 4.159 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.399 0.601 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.271 0.729 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.228 -0.678 -13.538 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.272 6.272 3 C 0.048 3.952 4 C 0.083 3.917 5 H 0.113 0.887 6 C -0.217 4.217 7 N -0.374 5.374 8 C 0.386 3.614 9 O -0.517 6.517 10 N -0.477 5.477 11 C 0.233 3.767 12 C -0.366 4.366 13 C 0.016 3.984 14 N -0.133 5.133 15 C 0.139 3.861 16 C -0.594 4.594 17 H 0.088 0.912 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.204 1.204 24 N -0.195 5.195 25 H 0.290 0.710 26 C -0.197 4.197 27 C -0.199 4.199 28 C -0.197 4.197 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.232 0.768 36 H 0.200 0.800 37 H 0.203 0.797 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.855 -1.002 -13.167 20.634 hybrid contribution -0.308 0.786 1.030 1.332 sum -16.163 -0.216 -12.137 20.214 Atomic orbital electron populations 1.23053 0.81771 1.02397 1.00259 1.87953 1.19288 1.25566 1.94353 1.22880 0.93055 0.83165 0.96050 1.20549 0.88055 0.99117 0.83979 0.88720 1.22092 1.01853 1.00297 0.97414 1.44662 1.16677 1.55578 1.20516 1.16605 0.81797 0.79483 0.83555 1.90715 1.56004 1.43393 1.61591 1.68054 1.14518 1.43976 1.21172 1.18716 0.89294 0.86000 0.82711 1.22392 0.94638 1.13373 1.06230 1.22792 1.00042 0.91279 0.84335 1.47944 1.04025 1.41898 1.19447 1.20023 0.84633 0.99354 0.82132 1.21467 1.21607 1.07875 1.08473 0.91188 1.24959 0.94341 0.96859 0.97432 1.69908 1.20945 1.33053 1.28484 0.86250 0.78438 0.81577 0.80188 1.19397 1.20554 1.20414 1.44435 1.07158 1.48059 1.19883 0.70952 1.23557 0.98876 0.99795 0.97481 1.23358 0.97726 1.02151 0.96627 1.23492 0.98592 1.00076 0.97542 0.89918 0.93358 0.93470 0.91995 0.92524 0.92022 0.76765 0.80008 0.79732 0.93147 0.91465 0.91936 0.88710 0.90669 0.89108 0.91069 0.90752 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.17 101.05 0.93 1.09 16 2 O -0.35 -3.90 9.94 -35.23 -0.35 -4.25 16 3 C 0.09 0.96 0.98 -89.81 -0.09 0.87 16 4 C 0.19 2.55 2.20 -67.93 -0.15 2.40 16 5 H 0.09 1.39 7.41 -51.93 -0.38 1.00 16 6 C -0.16 -2.06 9.25 37.16 0.34 -1.72 16 7 N -0.72 -11.53 4.87 -58.87 -0.29 -11.82 16 8 C 0.69 13.63 8.44 -87.76 -0.74 12.89 16 9 O -0.63 -13.75 12.92 5.06 0.07 -13.69 16 10 N -0.71 -14.43 10.59 -15.79 -0.17 -14.60 16 11 C 0.49 9.68 8.07 -155.29 -1.25 8.43 16 12 C -0.33 -6.36 9.52 -39.62 -0.38 -6.74 16 13 C 0.16 2.77 11.45 -16.66 -0.19 2.58 16 14 N -0.35 -6.57 3.63 -62.24 -0.23 -6.79 16 15 C 0.25 5.38 6.19 -5.19 -0.03 5.35 16 16 C -0.56 -13.34 9.39 -34.44 -0.32 -13.67 16 17 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -22.68 13.29 55.43 0.74 -21.95 16 20 Si 0.91 19.40 29.54 -169.99 -5.02 14.37 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 N -0.47 -8.65 7.38 31.33 0.23 -8.42 16 25 H 0.44 7.20 8.96 -182.55 -1.64 5.57 16 26 C -0.16 -1.38 6.88 -25.82 -0.18 -1.55 16 27 C -0.16 -1.28 7.30 -25.83 -0.19 -1.47 16 28 C -0.16 -1.61 6.69 -25.93 -0.17 -1.78 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.35 5.86 -51.92 -0.30 0.04 16 31 H 0.05 0.31 5.86 -51.93 -0.30 0.01 16 32 H 0.06 0.82 7.64 -51.93 -0.40 0.42 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 6.09 8.70 -40.82 -0.36 5.73 16 36 H 0.18 3.65 5.77 -52.49 -0.30 3.35 16 37 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 41 H 0.09 0.79 7.99 -51.93 -0.41 0.38 16 42 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 43 H 0.09 0.61 4.83 -51.93 -0.25 0.36 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 46 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -29.37 373.56 -9.96 -39.33 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -8.05 Total: 13.90 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -2.52 Total: 8.29 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 0.29 Total: -63.58 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.28 Total: -17.94 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.37 -9.96 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416866441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.123 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds