Wall clock time and date at job start Tue Mar 31 2020 14:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47260 * 2 1 4 4 N 1.46903 * 109.47202 * 239.99946 * 2 1 3 5 5 C 1.46904 * 111.00140 * 84.21409 * 4 2 1 6 6 C 1.52996 * 109.47182 * 185.31731 * 5 4 2 7 7 C 1.50699 * 115.55296 * 84.78300 * 6 5 4 8 8 H 1.07997 * 119.99467 * 270.40409 * 7 6 5 9 9 C 1.37871 * 119.99920 * 90.39357 * 7 6 5 10 10 N 1.31522 * 119.99832 * 174.38488 * 9 7 6 11 11 Si 1.86796 * 120.00387 * 354.38981 * 9 7 6 12 12 H 1.48503 * 109.47036 * 88.85289 * 11 9 7 13 13 H 1.48500 * 109.47248 * 208.85345 * 11 9 7 14 14 H 1.48501 * 109.46951 * 328.85716 * 11 9 7 15 15 C 1.53005 * 117.49711 * 299.10815 * 6 5 4 16 16 C 1.52998 * 60.03251 * 252.50118 * 15 6 5 17 17 C 1.50698 * 109.47424 * 119.99714 * 2 1 3 18 18 C 1.38355 * 119.93569 * 78.27771 * 17 2 1 19 19 C 1.38305 * 120.24665 * 179.97438 * 18 17 2 20 20 C 1.38041 * 120.11930 * 0.02562 * 19 18 17 21 21 C 1.39326 * 119.87590 * 359.97438 * 20 19 18 22 22 C 1.48371 * 120.11795 * 180.02562 * 21 20 19 23 23 C 1.39772 * 120.90269 * 179.71707 * 22 21 20 24 24 C 1.37978 * 119.01863 * 179.79526 * 23 22 21 25 25 N 1.31922 * 120.88143 * 0.48438 * 24 23 22 26 26 C 1.31924 * 122.00591 * 359.74395 * 25 24 23 27 27 C 1.37974 * 120.88296 * 0.02562 * 26 25 24 28 28 C 1.37989 * 119.94182 * 258.00512 * 17 2 1 29 29 H 1.09000 * 109.46868 * 299.99917 * 1 2 3 30 30 H 1.08997 * 109.47338 * 59.99797 * 1 2 3 31 31 H 1.08998 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.00893 * 111.00159 * 208.17252 * 4 2 1 33 33 H 1.09003 * 109.46925 * 65.31561 * 5 4 2 34 34 H 1.09000 * 109.47170 * 305.31810 * 5 4 2 35 35 H 0.96994 * 119.99690 * 180.02562 * 10 9 7 36 36 H 1.09005 * 117.49942 * 0.02562 * 15 6 5 37 37 H 1.08996 * 117.49469 * 144.99693 * 15 6 5 38 38 H 1.09006 * 117.50000 * 107.50216 * 16 15 6 39 39 H 1.08997 * 117.49905 * 252.52204 * 16 15 6 40 40 H 1.08000 * 119.87749 * 0.02562 * 18 17 2 41 41 H 1.07994 * 119.94047 * 179.97438 * 19 18 17 42 42 H 1.08001 * 120.05985 * 180.02562 * 20 19 18 43 43 H 1.08000 * 120.49032 * 0.02562 * 23 22 21 44 44 H 1.07999 * 119.55797 * 180.23267 * 24 23 22 45 45 H 1.07998 * 119.56031 * 179.97438 * 26 25 24 46 46 H 1.07996 * 120.49610 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.06105 * 0.02562 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0648 0.2179 -2.3515 6 6 2.4510 -0.5668 -3.6068 7 6 1.3142 -1.2519 -4.3205 8 1 1.0376 -2.2606 -4.0516 9 6 0.6272 -0.5909 -5.3164 10 7 -0.2902 -1.2242 -6.0143 11 14 0.9995 1.2042 -5.6749 12 1 2.0909 1.2926 -6.6780 13 1 -0.2183 1.8653 -6.2088 14 1 1.4221 1.8816 -4.4228 15 6 3.8121 -1.2656 -3.6122 16 6 3.5926 -0.0133 -4.4634 17 6 2.0324 -0.7103 1.2305 18 6 2.0329 -2.0931 1.2776 19 6 2.4930 -2.7516 2.4034 20 6 2.9541 -2.0315 3.4871 21 6 2.9558 -0.6389 3.4451 22 6 3.4508 0.1404 4.6066 23 6 3.4653 1.5378 4.5798 24 6 3.9299 2.2236 5.6833 25 7 4.3646 1.5777 6.7483 26 6 4.3720 0.2601 6.8123 27 6 3.9205 -0.5029 5.7551 28 6 2.4963 0.0194 2.3058 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9230 -1.1097 -1.0326 33 1 2.8037 0.9983 -2.1691 34 1 1.0843 0.6722 -2.4942 35 1 -0.7732 -0.7592 -6.7152 36 1 4.4323 -1.1666 -2.7213 37 1 3.8853 -2.2209 -4.1319 38 1 4.0684 0.9099 -4.1326 39 1 3.5210 -0.1448 -5.5430 40 1 1.6734 -2.6604 0.4318 41 1 2.4908 -3.8311 2.4350 42 1 3.3136 -2.5467 4.3656 43 1 3.1147 2.0729 3.7097 44 1 3.9415 3.3035 5.6735 45 1 4.7372 -0.2280 7.7038 46 1 3.9298 -1.5812 5.8140 47 1 2.4991 1.0986 2.2664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430726926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:48 Heat of formation + Delta-G solvation = 86.371294 kcal Electronic energy + Delta-G solvation = -25874.155626 eV Core-core repulsion = 22408.241298 eV Total energy + Delta-G solvation = -3465.914328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.64554 -39.37811 -37.53185 -35.65085 -33.60251 -32.05476 -31.84363 -31.09123 -29.86844 -28.81108 -26.24513 -24.78194 -24.49898 -23.95343 -22.36641 -21.82314 -21.58608 -19.91705 -18.88921 -17.74954 -16.59043 -16.52150 -16.36672 -15.76435 -15.45794 -15.09870 -14.69027 -14.39293 -14.32102 -14.03755 -13.91241 -13.83286 -13.48233 -13.28684 -12.97820 -12.75555 -12.43694 -12.32745 -11.95662 -11.83793 -11.68887 -11.30511 -11.19282 -11.02240 -10.81223 -10.55574 -10.50252 -10.35289 -10.03378 -9.81110 -9.61094 -9.50067 -8.99681 -8.93307 -8.53788 -8.51888 -8.44533 -7.83035 -6.04768 -4.04295 0.35139 0.82487 1.23543 1.72606 3.30575 3.39731 3.42808 3.43435 3.81493 4.11776 4.14267 4.32999 4.45999 4.51105 4.67180 4.71591 4.77480 4.83299 4.97581 5.08909 5.23071 5.26039 5.33000 5.34248 5.39157 5.44362 5.58448 5.60323 5.75904 5.85225 5.89454 5.92558 5.98643 6.06386 6.13181 6.20456 6.21080 6.32887 6.37311 6.39127 6.40502 6.47180 6.54884 6.62211 6.75387 6.84083 7.10180 7.25921 7.62345 7.66003 7.78311 7.93491 8.60144 9.02183 9.59106 11.07707 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.002566 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.154883 B =10910.049366 C =11257.834018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.121 3.879 3 H 0.043 0.957 4 N -0.664 5.664 5 C 0.098 3.902 6 C 0.013 3.987 7 C -0.470 4.470 8 H 0.079 0.921 9 C 0.073 3.927 10 N -0.901 5.901 11 Si 0.880 3.120 12 H -0.280 1.280 13 H -0.296 1.296 14 H -0.264 1.264 15 C -0.179 4.179 16 C -0.207 4.207 17 C -0.079 4.079 18 C -0.083 4.083 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.068 4.068 22 C 0.012 3.988 23 C -0.170 4.170 24 C 0.102 3.898 25 N -0.493 5.493 26 C 0.101 3.899 27 C -0.170 4.170 28 C -0.096 4.096 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.335 0.665 33 H 0.003 0.997 34 H 0.074 0.926 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.137 0.863 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.137 0.863 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 2.562 22.493 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.061 0.939 4 N -0.296 5.296 5 C -0.030 4.030 6 C 0.012 3.988 7 C -0.507 4.507 8 H 0.097 0.903 9 C -0.128 4.128 10 N -0.539 5.539 11 Si 0.708 3.292 12 H -0.206 1.206 13 H -0.223 1.223 14 H -0.188 1.188 15 C -0.216 4.216 16 C -0.245 4.245 17 C -0.080 4.080 18 C -0.101 4.101 19 C -0.139 4.139 20 C -0.123 4.123 21 C -0.068 4.068 22 C 0.004 3.996 23 C -0.189 4.189 24 C -0.054 4.054 25 N -0.202 5.202 26 C -0.055 4.055 27 C -0.190 4.190 28 C -0.115 4.115 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.021 0.979 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.158 0.842 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.174 0.826 45 H 0.173 0.827 46 H 0.155 0.845 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.946 2.824 22.894 24.091 hybrid contribution 0.641 1.072 -0.888 1.532 sum 7.587 3.896 22.006 23.601 Atomic orbital electron populations 1.21768 0.93471 1.02906 1.01036 1.20464 0.96420 0.94750 0.87188 0.93929 1.60461 1.32495 1.34157 1.02463 1.21870 0.99721 0.91838 0.89601 1.19391 0.88778 0.97346 0.93293 1.20221 1.12796 1.01374 1.16339 0.90289 1.24968 0.94805 0.97652 0.95380 1.69903 1.25284 1.36592 1.22135 0.86855 0.77046 0.86187 0.79089 1.20575 1.22310 1.18826 1.22715 1.02308 0.96163 1.00427 1.23047 1.06597 0.96340 0.98481 1.20026 0.98264 0.94180 0.95517 1.21364 0.96605 0.94022 0.98115 1.21156 0.99241 1.00130 0.93380 1.21178 0.99593 0.92781 0.98791 1.18555 1.02001 0.93060 0.93153 1.19215 0.94270 0.93094 0.93035 1.22271 1.01993 0.94062 1.00603 1.22698 0.93751 1.00507 0.88455 1.67645 1.15149 1.10425 1.27012 1.22687 0.95451 0.89513 0.97895 1.22229 1.01107 1.01614 0.94055 1.21096 0.98237 0.99705 0.92422 0.93323 0.91797 0.91586 0.84659 0.97888 0.90772 0.92744 0.91566 0.89551 0.91330 0.89383 0.84215 0.85564 0.85953 0.84523 0.82629 0.82676 0.84541 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.37 37.16 0.35 -1.58 16 2 C 0.12 1.73 2.81 -68.87 -0.19 1.54 16 3 H 0.04 0.60 7.70 -51.93 -0.40 0.20 16 4 N -0.66 -11.29 5.69 -107.95 -0.61 -11.91 16 5 C 0.10 1.95 4.72 -3.82 -0.02 1.93 16 6 C 0.01 0.29 1.06 -155.62 -0.16 0.13 16 7 C -0.47 -12.81 9.39 -34.44 -0.32 -13.14 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 10 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 11 Si 0.88 21.49 24.92 -169.99 -4.24 17.25 16 12 H -0.28 -6.74 7.05 56.52 0.40 -6.34 16 13 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.26 -6.08 6.30 56.52 0.36 -5.73 16 15 C -0.18 -3.55 9.53 -26.73 -0.25 -3.80 16 16 C -0.21 -4.36 7.57 -26.69 -0.20 -4.56 16 17 C -0.08 -0.99 4.69 -104.67 -0.49 -1.48 16 18 C -0.08 -1.00 9.05 -39.51 -0.36 -1.36 16 19 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 20 C -0.11 -1.03 9.45 -39.25 -0.37 -1.40 16 21 C -0.07 -0.72 5.88 -104.90 -0.62 -1.33 16 22 C 0.01 0.12 5.91 -104.58 -0.62 -0.50 16 23 C -0.17 -1.56 9.50 -39.10 -0.37 -1.93 16 24 C 0.10 0.93 11.17 -17.61 -0.20 0.73 16 25 N -0.49 -5.09 10.35 -13.34 -0.14 -5.23 16 26 C 0.10 0.87 11.17 -17.61 -0.20 0.67 16 27 C -0.17 -1.45 9.50 -39.11 -0.37 -1.82 16 28 C -0.10 -1.08 9.07 -39.25 -0.36 -1.44 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.01 7.33 -51.93 -0.38 0.63 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.33 5.39 7.34 -39.30 -0.29 5.11 16 33 H 0.00 0.06 7.91 -51.93 -0.41 -0.35 16 34 H 0.07 1.59 6.73 -51.93 -0.35 1.24 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 1.15 7.77 -51.93 -0.40 0.74 16 37 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 38 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 39 H 0.09 1.98 7.14 -51.93 -0.37 1.61 16 40 H 0.14 1.81 7.76 -52.49 -0.41 1.40 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 0.90 6.30 -52.49 -0.33 0.57 16 43 H 0.14 1.05 6.34 -52.49 -0.33 0.71 16 44 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.14 0.86 6.34 -52.49 -0.33 0.53 16 47 H 0.12 1.21 6.26 -52.49 -0.33 0.88 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -30.89 378.66 -10.66 -41.54 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.90 Total: 8.06 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -5.25 Total: -29.01 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.02 Total: -43.55 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.24 Total: 17.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.89 -10.66 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430726926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.916 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds