Wall clock time and date at job start Tue Mar 31 2020 14:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47260 * 2 1 4 4 N 1.46903 * 109.47202 * 239.99946 * 2 1 3 5 5 C 1.46904 * 111.00140 * 84.21409 * 4 2 1 6 6 C 1.52996 * 109.47182 * 185.31731 * 5 4 2 7 7 C 1.50699 * 115.55296 * 84.78300 * 6 5 4 8 8 H 1.07997 * 119.99467 * 270.40409 * 7 6 5 9 9 C 1.37871 * 119.99920 * 90.39357 * 7 6 5 10 10 N 1.31522 * 119.99832 * 174.38488 * 9 7 6 11 11 Si 1.86796 * 120.00387 * 354.38981 * 9 7 6 12 12 H 1.48503 * 109.47036 * 88.85289 * 11 9 7 13 13 H 1.48500 * 109.47248 * 208.85345 * 11 9 7 14 14 H 1.48501 * 109.46951 * 328.85716 * 11 9 7 15 15 C 1.53005 * 117.49711 * 299.10815 * 6 5 4 16 16 C 1.52998 * 60.03251 * 252.50118 * 15 6 5 17 17 C 1.50698 * 109.47424 * 119.99714 * 2 1 3 18 18 C 1.38355 * 119.93569 * 78.27771 * 17 2 1 19 19 C 1.38305 * 120.24665 * 179.97438 * 18 17 2 20 20 C 1.38041 * 120.11930 * 0.02562 * 19 18 17 21 21 C 1.39326 * 119.87590 * 359.97438 * 20 19 18 22 22 C 1.48371 * 120.11795 * 180.02562 * 21 20 19 23 23 C 1.39772 * 120.90269 * 179.71707 * 22 21 20 24 24 C 1.37978 * 119.01863 * 179.79526 * 23 22 21 25 25 N 1.31922 * 120.88143 * 0.48438 * 24 23 22 26 26 C 1.31924 * 122.00591 * 359.74395 * 25 24 23 27 27 C 1.37974 * 120.88296 * 0.02562 * 26 25 24 28 28 C 1.37989 * 119.94182 * 258.00512 * 17 2 1 29 29 H 1.09000 * 109.46868 * 299.99917 * 1 2 3 30 30 H 1.08997 * 109.47338 * 59.99797 * 1 2 3 31 31 H 1.08998 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.00893 * 111.00159 * 208.17252 * 4 2 1 33 33 H 1.09003 * 109.46925 * 65.31561 * 5 4 2 34 34 H 1.09000 * 109.47170 * 305.31810 * 5 4 2 35 35 H 0.96994 * 119.99690 * 180.02562 * 10 9 7 36 36 H 1.09005 * 117.49942 * 0.02562 * 15 6 5 37 37 H 1.08996 * 117.49469 * 144.99693 * 15 6 5 38 38 H 1.09006 * 117.50000 * 107.50216 * 16 15 6 39 39 H 1.08997 * 117.49905 * 252.52204 * 16 15 6 40 40 H 1.08000 * 119.87749 * 0.02562 * 18 17 2 41 41 H 1.07994 * 119.94047 * 179.97438 * 19 18 17 42 42 H 1.08001 * 120.05985 * 180.02562 * 20 19 18 43 43 H 1.08000 * 120.49032 * 0.02562 * 23 22 21 44 44 H 1.07999 * 119.55797 * 180.23267 * 24 23 22 45 45 H 1.07998 * 119.56031 * 179.97438 * 26 25 24 46 46 H 1.07996 * 120.49610 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.06105 * 0.02562 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0648 0.2179 -2.3515 6 6 2.4510 -0.5668 -3.6068 7 6 1.3142 -1.2519 -4.3205 8 1 1.0376 -2.2606 -4.0516 9 6 0.6272 -0.5909 -5.3164 10 7 -0.2902 -1.2242 -6.0143 11 14 0.9995 1.2042 -5.6749 12 1 2.0909 1.2926 -6.6780 13 1 -0.2183 1.8653 -6.2088 14 1 1.4221 1.8816 -4.4228 15 6 3.8121 -1.2656 -3.6122 16 6 3.5926 -0.0133 -4.4634 17 6 2.0324 -0.7103 1.2305 18 6 2.0329 -2.0931 1.2776 19 6 2.4930 -2.7516 2.4034 20 6 2.9541 -2.0315 3.4871 21 6 2.9558 -0.6389 3.4451 22 6 3.4508 0.1404 4.6066 23 6 3.4653 1.5378 4.5798 24 6 3.9299 2.2236 5.6833 25 7 4.3646 1.5777 6.7483 26 6 4.3720 0.2601 6.8123 27 6 3.9205 -0.5029 5.7551 28 6 2.4963 0.0194 2.3058 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9230 -1.1097 -1.0326 33 1 2.8037 0.9983 -2.1691 34 1 1.0843 0.6722 -2.4942 35 1 -0.7732 -0.7592 -6.7152 36 1 4.4323 -1.1666 -2.7213 37 1 3.8853 -2.2209 -4.1319 38 1 4.0684 0.9099 -4.1326 39 1 3.5210 -0.1448 -5.5430 40 1 1.6734 -2.6604 0.4318 41 1 2.4908 -3.8311 2.4350 42 1 3.3136 -2.5467 4.3656 43 1 3.1147 2.0729 3.7097 44 1 3.9415 3.3035 5.6735 45 1 4.7372 -0.2280 7.7038 46 1 3.9298 -1.5812 5.8140 47 1 2.4991 1.0986 2.2664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430726926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:47 Heat of formation + Delta-G solvation = 69.138184 kcal Electronic energy + Delta-G solvation = -25874.902910 eV Core-core repulsion = 22408.241298 eV Total energy + Delta-G solvation = -3466.661612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.34819 -40.24520 -39.05011 -36.88784 -34.41540 -34.14828 -32.67467 -31.99360 -30.70739 -29.84006 -28.12292 -26.30078 -25.25675 -24.79414 -23.48589 -23.09350 -22.58874 -20.89438 -20.70237 -18.69603 -18.15694 -17.28413 -17.19635 -17.02736 -16.57168 -16.30451 -16.02126 -15.42986 -15.28295 -15.06415 -14.93587 -14.86417 -14.68462 -14.47948 -14.33544 -14.04066 -13.69262 -13.42083 -13.16147 -13.04619 -12.93179 -12.72448 -12.59293 -12.25713 -12.14473 -12.00155 -11.90214 -11.65783 -11.44399 -11.25945 -10.82627 -10.60742 -10.46756 -10.25509 -10.11551 -9.76818 -9.28563 -9.16944 -8.23276 -6.26485 -0.38438 0.20859 0.40874 0.95547 1.36686 1.39037 1.51074 2.40529 2.68693 3.00013 3.09286 3.12447 3.39730 3.55693 3.59777 3.63034 3.87435 4.02845 4.09333 4.14864 4.17464 4.25856 4.34061 4.40966 4.45011 4.46187 4.51514 4.58994 4.61101 4.70634 4.72626 4.81467 4.85713 4.86281 4.93665 4.99534 5.09379 5.11024 5.15564 5.15781 5.35031 5.46061 5.53779 5.60269 5.61796 5.65825 5.75669 5.77425 6.01155 6.28049 6.40505 6.65189 6.81140 7.02904 7.40322 8.93253 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.002566 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.154883 B =10910.049366 C =11257.834018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.126 3.874 3 H 0.052 0.948 4 N -0.676 5.676 5 C 0.109 3.891 6 C -0.012 4.012 7 C -0.467 4.467 8 H 0.029 0.971 9 C 0.015 3.985 10 N -0.954 5.954 11 Si 0.941 3.059 12 H -0.270 1.270 13 H -0.301 1.301 14 H -0.237 1.237 15 C -0.160 4.160 16 C -0.202 4.202 17 C -0.089 4.089 18 C -0.099 4.099 19 C -0.121 4.121 20 C -0.103 4.103 21 C -0.068 4.068 22 C -0.006 4.006 23 C -0.175 4.175 24 C 0.092 3.908 25 N -0.518 5.518 26 C 0.093 3.907 27 C -0.169 4.169 28 C -0.100 4.100 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.341 0.659 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.262 0.738 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.175 0.825 45 H 0.180 0.820 46 H 0.159 0.841 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.657 4.028 25.083 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.016 3.984 3 H 0.070 0.930 4 N -0.308 5.308 5 C -0.020 4.020 6 C -0.013 4.013 7 C -0.504 4.504 8 H 0.047 0.953 9 C -0.182 4.182 10 N -0.595 5.595 11 Si 0.766 3.234 12 H -0.196 1.196 13 H -0.229 1.229 14 H -0.160 1.160 15 C -0.197 4.197 16 C -0.240 4.240 17 C -0.089 4.089 18 C -0.117 4.117 19 C -0.138 4.138 20 C -0.121 4.121 21 C -0.068 4.068 22 C -0.014 4.014 23 C -0.195 4.195 24 C -0.063 4.063 25 N -0.227 5.227 26 C -0.063 4.063 27 C -0.188 4.188 28 C -0.119 4.119 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.193 0.807 45 H 0.197 0.803 46 H 0.177 0.823 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.220 4.286 25.509 27.461 hybrid contribution -0.057 0.472 -1.584 1.653 sum 9.163 4.758 23.926 26.058 Atomic orbital electron populations 1.21741 0.94135 1.01963 1.01077 1.20420 0.95859 0.95186 0.86894 0.93015 1.60336 1.33076 1.34372 1.03025 1.21549 0.98976 0.92125 0.89330 1.19288 0.88047 0.99277 0.94717 1.20377 1.14136 0.99597 1.16336 0.95320 1.25809 0.94683 1.02296 0.95366 1.70066 1.27307 1.38672 1.23480 0.85855 0.76806 0.80693 0.80020 1.19596 1.22896 1.16038 1.22723 1.00517 0.95279 1.01203 1.23081 1.05365 0.98088 0.97468 1.19822 0.99610 0.94228 0.95242 1.21312 0.97810 0.94050 0.98549 1.21364 0.98490 1.01201 0.92784 1.21496 0.98575 0.92630 0.99355 1.18716 1.01443 0.93574 0.93115 1.19340 0.95204 0.93500 0.93342 1.22456 1.01831 0.94107 1.01075 1.23052 0.93496 1.01584 0.88201 1.67676 1.15868 1.11449 1.27733 1.23143 0.95095 0.89187 0.98879 1.22486 1.00153 1.02803 0.93383 1.21205 0.98077 1.00362 0.92236 0.91060 0.93871 0.93028 0.83954 0.95646 0.92997 0.92871 0.88062 0.90872 0.88249 0.91170 0.85975 0.83681 0.83281 0.83408 0.80749 0.80265 0.82330 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.37 71.98 0.67 -3.11 16 2 C 0.13 3.45 2.81 44.17 0.12 3.58 16 3 H 0.05 1.34 7.70 -2.39 -0.02 1.32 16 4 N -0.68 -22.52 5.69 -495.45 -2.82 -25.34 16 5 C 0.11 4.18 4.72 86.30 0.41 4.58 16 6 C -0.01 -0.53 1.06 -52.90 -0.06 -0.59 16 7 C -0.47 -26.37 9.39 25.60 0.24 -26.13 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 9 C 0.01 0.85 5.46 84.65 0.46 1.31 16 10 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 11 Si 0.94 44.52 24.92 68.60 1.71 46.23 16 12 H -0.27 -12.32 7.05 99.48 0.70 -11.62 16 13 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.24 -10.13 6.30 99.48 0.63 -9.50 16 15 C -0.16 -6.05 9.53 30.60 0.29 -5.76 16 16 C -0.20 -8.02 7.57 30.62 0.23 -7.79 16 17 C -0.09 -2.10 4.69 -19.90 -0.09 -2.19 16 18 C -0.10 -2.31 9.05 22.31 0.20 -2.11 16 19 C -0.12 -2.24 10.03 22.24 0.22 -2.01 16 20 C -0.10 -1.70 9.45 22.49 0.21 -1.49 16 21 C -0.07 -1.27 5.88 -20.04 -0.12 -1.39 16 22 C -0.01 -0.10 5.91 -19.84 -0.12 -0.22 16 23 C -0.18 -2.82 9.50 22.58 0.21 -2.61 16 24 C 0.09 1.49 11.17 84.62 0.95 2.44 16 25 N -0.52 -9.66 10.35 -196.13 -2.03 -11.69 16 26 C 0.09 1.37 11.17 84.62 0.95 2.31 16 27 C -0.17 -2.38 9.50 22.58 0.21 -2.16 16 28 C -0.10 -2.04 9.07 22.48 0.20 -1.84 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.39 7.33 -2.39 -0.02 1.38 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.34 10.52 7.34 -89.70 -0.66 9.86 16 33 H 0.03 0.87 7.91 -2.39 -0.02 0.85 16 34 H 0.05 2.20 6.73 -2.39 -0.02 2.18 16 35 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.10 3.14 7.77 -2.38 -0.02 3.12 16 37 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.10 3.36 8.06 -2.38 -0.02 3.34 16 39 H 0.07 3.04 7.14 -2.39 -0.02 3.02 16 40 H 0.12 3.24 7.76 -2.91 -0.02 3.22 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.15 1.61 6.30 -2.91 -0.02 1.59 16 43 H 0.15 1.92 6.34 -2.91 -0.02 1.90 16 44 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 46 H 0.16 1.39 6.34 -2.91 -0.02 1.37 16 47 H 0.13 2.32 6.26 -2.91 -0.02 2.30 16 Total: -1.00 -69.62 378.66 2.60 -67.02 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.23 Total: 28.88 kcal Atomic # 6 Polarization: -50.39 SS G_CDS: 5.21 Total: -45.18 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -4.55 Total: -96.94 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.71 Total: 46.23 kcal Total: -69.62 2.60 -67.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430726926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.158 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds