Wall clock time and date at job start Tue Mar 31 2020 14:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46979 * 2 1 4 4 N 1.46904 * 109.46909 * 119.99867 * 2 1 3 5 5 C 1.46906 * 110.99617 * 273.62217 * 4 2 1 6 6 C 1.53000 * 109.46939 * 185.21064 * 5 4 2 7 7 C 1.50695 * 115.56461 * 268.76846 * 6 5 4 8 8 H 1.07998 * 120.00053 * 142.39996 * 7 6 5 9 9 C 1.37877 * 120.00168 * 322.40549 * 7 6 5 10 10 N 1.31514 * 119.99684 * 343.08375 * 9 7 6 11 11 Si 1.86793 * 120.00226 * 163.08547 * 9 7 6 12 12 H 1.48503 * 109.47018 * 89.99998 * 11 9 7 13 13 H 1.48505 * 109.47251 * 209.99742 * 11 9 7 14 14 H 1.48498 * 109.47272 * 330.00086 * 11 9 7 15 15 C 1.53011 * 117.49797 * 54.45999 * 6 5 4 16 16 C 1.53006 * 60.03153 * 107.47915 * 15 6 5 17 17 C 1.50696 * 109.47199 * 239.99546 * 2 1 3 18 18 C 1.38352 * 119.93604 * 285.28526 * 17 2 1 19 19 C 1.38309 * 120.24300 * 179.76221 * 18 17 2 20 20 C 1.38044 * 120.12219 * 0.51775 * 19 18 17 21 21 C 1.39332 * 119.87461 * 359.74382 * 20 19 18 22 22 C 1.48362 * 120.12183 * 180.02562 * 21 20 19 23 23 C 1.39764 * 120.90687 * 179.69710 * 22 21 20 24 24 C 1.37974 * 119.02360 * 179.74757 * 23 22 21 25 25 N 1.31925 * 120.88193 * 0.53737 * 24 23 22 26 26 C 1.31932 * 122.00204 * 359.71346 * 25 24 23 27 27 C 1.37974 * 120.87862 * 0.02562 * 26 25 24 28 28 C 1.37993 * 119.94173 * 105.56340 * 17 2 1 29 29 H 1.09000 * 109.46392 * 60.00305 * 1 2 3 30 30 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46948 * 300.00344 * 1 2 3 32 32 H 1.00902 * 111.00149 * 37.56711 * 4 2 1 33 33 H 1.09002 * 109.47230 * 65.21252 * 5 4 2 34 34 H 1.09002 * 109.47152 * 305.20977 * 5 4 2 35 35 H 0.97000 * 120.00262 * 185.01966 * 10 9 7 36 36 H 1.08997 * 117.49798 * 214.97674 * 15 6 5 37 37 H 1.08995 * 117.49616 * 359.97367 * 15 6 5 38 38 H 1.08987 * 117.50103 * 107.50367 * 16 15 6 39 39 H 1.09001 * 117.49317 * 252.52571 * 16 15 6 40 40 H 1.07999 * 119.87804 * 0.02562 * 18 17 2 41 41 H 1.07998 * 119.93841 * 180.23742 * 19 18 17 42 42 H 1.07992 * 120.06239 * 179.71954 * 20 19 18 43 43 H 1.08004 * 120.49077 * 359.97438 * 23 22 21 44 44 H 1.08005 * 119.56325 * 180.24612 * 24 23 22 45 45 H 1.08002 * 119.55758 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.48637 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.05768 * 0.02562 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.1134 0.2304 2.3387 6 6 2.7469 -0.4920 3.5294 7 6 1.7813 -1.1659 4.4698 8 1 2.0363 -2.1156 4.9164 9 6 0.5723 -0.5702 4.7601 10 7 0.3895 0.7063 4.5018 11 14 -0.8059 -1.5760 5.5203 12 1 -0.7036 -1.5167 7.0006 13 1 -2.1162 -1.0235 5.0923 14 1 -0.6938 -2.9874 5.0725 15 6 4.1030 -1.1650 3.3074 16 6 4.0133 0.1191 4.1345 17 6 2.0324 -0.7105 -1.2304 18 6 1.9645 -2.0902 -1.3070 19 6 2.4192 -2.7485 -2.4352 20 6 2.9534 -2.0319 -3.4872 21 6 3.0291 -0.6426 -3.4132 22 6 3.6017 0.1330 -4.5409 23 6 3.6798 1.5274 -4.4867 24 6 4.2244 2.2094 -5.5553 25 7 4.6575 1.5636 -6.6210 26 6 4.5974 0.2489 -6.7143 27 6 4.0724 -0.5104 -5.6889 28 6 2.5645 0.0158 -2.2761 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.4362 -1.4848 1.4231 33 1 1.1155 0.5738 2.6111 34 1 2.7297 1.0862 2.0632 35 1 -0.4336 1.1428 4.7719 36 1 4.2967 -2.0951 3.8416 37 1 4.5436 -1.0934 2.3130 38 1 4.1479 0.0337 5.2126 39 1 4.3945 1.0355 3.6840 40 1 1.5511 -2.6550 -0.4845 41 1 2.3604 -3.8254 -2.4913 42 1 3.3123 -2.5472 -4.3658 43 1 3.3226 2.0630 -3.6195 44 1 4.2927 3.2868 -5.5209 45 1 4.9640 -0.2393 -7.6052 46 1 4.0258 -1.5863 -5.7722 47 1 2.6214 1.0925 -2.2132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430726927.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:51 Heat of formation + Delta-G solvation = 83.644132 kcal Electronic energy + Delta-G solvation = -26025.977086 eV Core-core repulsion = 22559.944500 eV Total energy + Delta-G solvation = -3466.032587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.50895 -39.18057 -37.15655 -35.41298 -33.46735 -32.21789 -31.73095 -30.88182 -29.70046 -28.53436 -25.74296 -24.61070 -24.39994 -23.82595 -22.41182 -21.68381 -21.00053 -19.87569 -19.01864 -17.58957 -16.45445 -16.33510 -16.20042 -15.61712 -15.01524 -14.77919 -14.70395 -14.27294 -14.16134 -14.01170 -13.79175 -13.64531 -13.24173 -13.15132 -13.02629 -12.50334 -12.22731 -12.08955 -11.83671 -11.59122 -11.30876 -11.22052 -10.99426 -10.87986 -10.78064 -10.56296 -10.42461 -10.35791 -10.15288 -9.70920 -9.39322 -9.24786 -9.02949 -8.73511 -8.64305 -8.32977 -8.15492 -7.42215 -6.10559 -4.10679 0.48994 0.93306 1.44460 1.88059 3.20263 3.29130 3.33654 3.56226 3.97126 4.23545 4.28407 4.31275 4.47398 4.79671 4.80793 4.89785 4.92057 4.97142 5.09747 5.18348 5.33955 5.42302 5.50292 5.51756 5.54686 5.63737 5.67283 5.68891 5.85732 5.99150 6.06519 6.12274 6.16111 6.22238 6.39939 6.45620 6.52721 6.53491 6.57032 6.64196 6.75740 6.87640 6.98009 7.00147 7.02773 7.16719 7.46902 7.56336 7.76152 7.93184 8.01068 8.23964 8.47597 8.85624 9.45365 10.89510 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.002663 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.934767 B =10513.582654 C =10761.795168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.119 3.881 3 H 0.078 0.922 4 N -0.678 5.678 5 C 0.088 3.912 6 C 0.057 3.943 7 C -0.488 4.488 8 H 0.059 0.941 9 C 0.069 3.931 10 N -0.875 5.875 11 Si 0.885 3.115 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.272 1.272 15 C -0.192 4.192 16 C -0.204 4.204 17 C -0.051 4.051 18 C -0.083 4.083 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.068 4.068 22 C 0.014 3.986 23 C -0.169 4.169 24 C 0.101 3.899 25 N -0.494 5.494 26 C 0.100 3.900 27 C -0.171 4.171 28 C -0.097 4.097 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.341 0.659 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.138 0.862 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.136 0.864 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -1.507 -18.755 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.009 3.991 3 H 0.097 0.903 4 N -0.308 5.308 5 C -0.040 4.040 6 C 0.056 3.944 7 C -0.526 4.526 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.512 5.512 11 Si 0.712 3.288 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.229 4.229 16 C -0.243 4.243 17 C -0.051 4.051 18 C -0.101 4.101 19 C -0.140 4.140 20 C -0.129 4.129 21 C -0.068 4.068 22 C 0.006 3.994 23 C -0.189 4.189 24 C -0.055 4.055 25 N -0.204 5.204 26 C -0.057 4.057 27 C -0.191 4.191 28 C -0.116 4.116 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.104 0.896 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.173 0.827 45 H 0.172 0.828 46 H 0.154 0.846 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.529 -0.805 -19.648 19.979 hybrid contribution -1.893 -0.830 1.530 2.572 sum 1.636 -1.635 -18.118 18.265 Atomic orbital electron populations 1.22475 0.96604 1.02156 1.02152 1.20432 0.92480 0.97093 0.89143 0.90345 1.60633 1.55162 1.11029 1.04015 1.21728 1.02890 0.92111 0.87247 1.18869 0.85380 0.96347 0.93824 1.20618 0.99789 1.05652 1.26501 0.92238 1.24967 0.98347 0.94651 0.95357 1.69905 1.26548 1.08877 1.45908 0.86702 0.81698 0.80924 0.79477 1.20660 1.21107 1.19663 1.22685 1.05953 0.95208 0.99101 1.22978 1.08782 0.94801 0.97741 1.19933 0.96597 0.93864 0.94737 1.21133 0.97754 0.94124 0.97122 1.21073 0.99391 0.99831 0.93704 1.21095 0.99982 0.92843 0.98954 1.18540 1.01594 0.93078 0.93564 1.19229 0.94038 0.93104 0.93024 1.22284 1.01657 0.94141 1.00804 1.22691 0.93668 1.00454 0.88656 1.67642 1.16580 1.10365 1.25791 1.22666 0.95403 0.89577 0.98021 1.22221 1.01024 1.01572 0.94293 1.21063 0.98232 0.99697 0.92609 0.92936 0.92558 0.91469 0.84100 0.89576 0.94694 0.92865 0.91438 0.90822 0.90862 0.92109 0.85600 0.85931 0.86180 0.84434 0.82659 0.82778 0.84617 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.10 37.16 0.34 -2.25 16 2 C 0.12 1.86 2.79 -68.86 -0.19 1.67 16 3 H 0.08 1.25 7.49 -51.93 -0.39 0.86 16 4 N -0.68 -12.61 5.56 -107.94 -0.60 -13.21 16 5 C 0.09 1.94 5.27 -3.82 -0.02 1.92 16 6 C 0.06 1.36 1.98 -155.62 -0.31 1.05 16 7 C -0.49 -12.79 9.00 -34.44 -0.31 -13.10 16 8 H 0.06 1.58 7.87 -52.49 -0.41 1.17 16 9 C 0.07 1.79 5.05 -17.82 -0.09 1.70 16 10 N -0.88 -23.23 11.06 55.43 0.61 -22.62 16 11 Si 0.88 20.04 29.57 -169.99 -5.03 15.01 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 C -0.19 -4.23 9.71 -26.72 -0.26 -4.49 16 16 C -0.20 -4.73 9.89 -26.69 -0.26 -4.99 16 17 C -0.05 -0.71 4.94 -104.67 -0.52 -1.23 16 18 C -0.08 -1.11 9.23 -39.51 -0.36 -1.47 16 19 C -0.12 -1.41 10.03 -39.63 -0.40 -1.80 16 20 C -0.11 -1.22 9.45 -39.25 -0.37 -1.59 16 21 C -0.07 -0.81 5.88 -104.90 -0.62 -1.43 16 22 C 0.01 0.16 5.91 -104.59 -0.62 -0.46 16 23 C -0.17 -1.74 9.50 -39.11 -0.37 -2.11 16 24 C 0.10 1.02 11.17 -17.61 -0.20 0.82 16 25 N -0.49 -5.54 10.35 -13.34 -0.14 -5.68 16 26 C 0.10 0.95 11.17 -17.61 -0.20 0.75 16 27 C -0.17 -1.64 9.50 -39.11 -0.37 -2.01 16 28 C -0.10 -1.25 9.07 -39.25 -0.36 -1.61 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.07 1.12 7.65 -51.93 -0.40 0.73 16 32 H 0.34 6.50 7.99 -39.29 -0.31 6.19 16 33 H 0.09 2.10 4.84 -51.93 -0.25 1.85 16 34 H 0.03 0.77 7.66 -51.93 -0.40 0.38 16 35 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.07 1.72 8.14 -51.94 -0.42 1.30 16 39 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 40 H 0.13 1.67 7.47 -52.49 -0.39 1.28 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.03 6.30 -52.49 -0.33 0.70 16 43 H 0.14 1.22 6.34 -52.48 -0.33 0.89 16 44 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16 45 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.14 1.00 6.34 -52.48 -0.33 0.66 16 47 H 0.12 1.39 6.24 -52.48 -0.33 1.07 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -28.26 383.86 -11.66 -39.92 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.81 Total: 11.42 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -5.48 Total: -30.63 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.12 Total: -41.50 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.26 -11.66 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430726927.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.564 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds