Wall clock time and date at job start Tue Mar 31 2020 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46979 * 2 1 4 4 N 1.46904 * 109.46909 * 119.99867 * 2 1 3 5 5 C 1.46906 * 110.99617 * 273.62217 * 4 2 1 6 6 C 1.53000 * 109.46939 * 185.21064 * 5 4 2 7 7 C 1.50695 * 115.56461 * 268.76846 * 6 5 4 8 8 H 1.07998 * 120.00053 * 142.39996 * 7 6 5 9 9 C 1.37877 * 120.00168 * 322.40549 * 7 6 5 10 10 N 1.31514 * 119.99684 * 343.08375 * 9 7 6 11 11 Si 1.86793 * 120.00226 * 163.08547 * 9 7 6 12 12 H 1.48503 * 109.47018 * 89.99998 * 11 9 7 13 13 H 1.48505 * 109.47251 * 209.99742 * 11 9 7 14 14 H 1.48498 * 109.47272 * 330.00086 * 11 9 7 15 15 C 1.53011 * 117.49797 * 54.45999 * 6 5 4 16 16 C 1.53006 * 60.03153 * 107.47915 * 15 6 5 17 17 C 1.50696 * 109.47199 * 239.99546 * 2 1 3 18 18 C 1.38352 * 119.93604 * 285.28526 * 17 2 1 19 19 C 1.38309 * 120.24300 * 179.76221 * 18 17 2 20 20 C 1.38044 * 120.12219 * 0.51775 * 19 18 17 21 21 C 1.39332 * 119.87461 * 359.74382 * 20 19 18 22 22 C 1.48362 * 120.12183 * 180.02562 * 21 20 19 23 23 C 1.39764 * 120.90687 * 179.69710 * 22 21 20 24 24 C 1.37974 * 119.02360 * 179.74757 * 23 22 21 25 25 N 1.31925 * 120.88193 * 0.53737 * 24 23 22 26 26 C 1.31932 * 122.00204 * 359.71346 * 25 24 23 27 27 C 1.37974 * 120.87862 * 0.02562 * 26 25 24 28 28 C 1.37993 * 119.94173 * 105.56340 * 17 2 1 29 29 H 1.09000 * 109.46392 * 60.00305 * 1 2 3 30 30 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46948 * 300.00344 * 1 2 3 32 32 H 1.00902 * 111.00149 * 37.56711 * 4 2 1 33 33 H 1.09002 * 109.47230 * 65.21252 * 5 4 2 34 34 H 1.09002 * 109.47152 * 305.20977 * 5 4 2 35 35 H 0.97000 * 120.00262 * 185.01966 * 10 9 7 36 36 H 1.08997 * 117.49798 * 214.97674 * 15 6 5 37 37 H 1.08995 * 117.49616 * 359.97367 * 15 6 5 38 38 H 1.08987 * 117.50103 * 107.50367 * 16 15 6 39 39 H 1.09001 * 117.49317 * 252.52571 * 16 15 6 40 40 H 1.07999 * 119.87804 * 0.02562 * 18 17 2 41 41 H 1.07998 * 119.93841 * 180.23742 * 19 18 17 42 42 H 1.07992 * 120.06239 * 179.71954 * 20 19 18 43 43 H 1.08004 * 120.49077 * 359.97438 * 23 22 21 44 44 H 1.08005 * 119.56325 * 180.24612 * 24 23 22 45 45 H 1.08002 * 119.55758 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.48637 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.05768 * 0.02562 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.1134 0.2304 2.3387 6 6 2.7469 -0.4920 3.5294 7 6 1.7813 -1.1659 4.4698 8 1 2.0363 -2.1156 4.9164 9 6 0.5723 -0.5702 4.7601 10 7 0.3895 0.7063 4.5018 11 14 -0.8059 -1.5760 5.5203 12 1 -0.7036 -1.5167 7.0006 13 1 -2.1162 -1.0235 5.0923 14 1 -0.6938 -2.9874 5.0725 15 6 4.1030 -1.1650 3.3074 16 6 4.0133 0.1191 4.1345 17 6 2.0324 -0.7105 -1.2304 18 6 1.9645 -2.0902 -1.3070 19 6 2.4192 -2.7485 -2.4352 20 6 2.9534 -2.0319 -3.4872 21 6 3.0291 -0.6426 -3.4132 22 6 3.6017 0.1330 -4.5409 23 6 3.6798 1.5274 -4.4867 24 6 4.2244 2.2094 -5.5553 25 7 4.6575 1.5636 -6.6210 26 6 4.5974 0.2489 -6.7143 27 6 4.0724 -0.5104 -5.6889 28 6 2.5645 0.0158 -2.2761 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.4362 -1.4848 1.4231 33 1 1.1155 0.5738 2.6111 34 1 2.7297 1.0862 2.0632 35 1 -0.4336 1.1428 4.7719 36 1 4.2967 -2.0951 3.8416 37 1 4.5436 -1.0934 2.3130 38 1 4.1479 0.0337 5.2126 39 1 4.3945 1.0355 3.6840 40 1 1.5511 -2.6550 -0.4845 41 1 2.3604 -3.8254 -2.4913 42 1 3.3123 -2.5472 -4.3658 43 1 3.3226 2.0630 -3.6195 44 1 4.2927 3.2868 -5.5209 45 1 4.9640 -0.2393 -7.6052 46 1 4.0258 -1.5863 -5.7722 47 1 2.6214 1.0925 -2.2132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430726927.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:50 Heat of formation + Delta-G solvation = 71.025615 kcal Electronic energy + Delta-G solvation = -26026.524266 eV Core-core repulsion = 22559.944500 eV Total energy + Delta-G solvation = -3466.579767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.30496 -40.14960 -38.78490 -36.79918 -34.35900 -34.20361 -32.60835 -31.90852 -30.65252 -29.69500 -27.69693 -26.06662 -25.27577 -24.79214 -23.52402 -22.79691 -22.56334 -21.00029 -20.81236 -18.55509 -18.00486 -17.20628 -17.12327 -16.75796 -16.58150 -16.01284 -15.92395 -15.70498 -15.26368 -15.00178 -14.89951 -14.72919 -14.47809 -14.30991 -14.00560 -13.89790 -13.54506 -13.29648 -13.19293 -13.04628 -12.86003 -12.74590 -12.54698 -12.27899 -12.20526 -12.01772 -11.97072 -11.64782 -11.24065 -11.04301 -10.93733 -10.52484 -10.45850 -10.10449 -10.05868 -9.68381 -9.22450 -9.01853 -8.07024 -6.14449 -0.34728 0.22003 0.50013 1.00351 1.39115 1.44014 1.53167 2.41345 2.72913 2.98259 3.09898 3.33887 3.52835 3.60528 3.72275 3.89216 3.95991 4.05962 4.09580 4.16614 4.22222 4.31451 4.35850 4.41491 4.49956 4.62600 4.68089 4.70947 4.74727 4.82129 4.86218 4.89670 4.94071 5.04475 5.09502 5.13142 5.16354 5.19245 5.22913 5.24713 5.34052 5.58505 5.61824 5.63645 5.66713 5.74184 5.78589 6.03611 6.07619 6.41530 6.50638 6.64350 6.89598 7.03506 7.43715 8.90611 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.002663 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.934767 B =10513.582654 C =10761.795168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.122 3.878 3 H 0.071 0.929 4 N -0.673 5.673 5 C 0.103 3.897 6 C 0.034 3.966 7 C -0.509 4.509 8 H 0.049 0.951 9 C 0.033 3.967 10 N -0.895 5.895 11 Si 0.943 3.057 12 H -0.281 1.281 13 H -0.282 1.282 14 H -0.267 1.267 15 C -0.170 4.170 16 C -0.210 4.210 17 C -0.065 4.065 18 C -0.099 4.099 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.069 4.069 22 C -0.005 4.005 23 C -0.177 4.177 24 C 0.093 3.907 25 N -0.517 5.517 26 C 0.093 3.907 27 C -0.169 4.169 28 C -0.108 4.108 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.337 0.663 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.120 0.880 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.175 0.825 45 H 0.182 0.818 46 H 0.160 0.840 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 -2.736 -20.752 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 H 0.089 0.911 4 N -0.303 5.303 5 C -0.026 4.026 6 C 0.033 3.967 7 C -0.546 4.546 8 H 0.067 0.933 9 C -0.168 4.168 10 N -0.533 5.533 11 Si 0.769 3.231 12 H -0.207 1.207 13 H -0.207 1.207 14 H -0.192 1.192 15 C -0.207 4.207 16 C -0.249 4.249 17 C -0.065 4.065 18 C -0.118 4.118 19 C -0.138 4.138 20 C -0.126 4.126 21 C -0.070 4.070 22 C -0.013 4.013 23 C -0.197 4.197 24 C -0.063 4.063 25 N -0.227 5.227 26 C -0.062 4.062 27 C -0.188 4.188 28 C -0.126 4.126 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.155 0.845 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.192 0.808 45 H 0.199 0.801 46 H 0.177 0.823 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.771 -2.035 -21.653 22.073 hybrid contribution -1.908 -0.430 2.074 2.851 sum 1.863 -2.464 -19.579 19.822 Atomic orbital electron populations 1.22364 0.96094 1.02281 1.01749 1.20411 0.92938 0.96716 0.88706 0.91071 1.60592 1.55603 1.10416 1.03688 1.21392 1.01037 0.92223 0.87905 1.19017 0.85820 0.97380 0.94460 1.20802 1.00980 1.05509 1.27305 0.93287 1.25550 0.99994 0.95385 0.95887 1.70016 1.26911 1.09907 1.46480 0.85791 0.79145 0.79718 0.78459 1.20720 1.20738 1.19198 1.22611 1.04261 0.94642 0.99224 1.22975 1.08641 0.95825 0.97429 1.19742 0.98196 0.94288 0.94317 1.21205 0.98694 0.93882 0.97980 1.21345 0.98426 1.01114 0.92941 1.21452 0.98936 0.92547 0.99685 1.18711 1.01083 0.93744 0.93418 1.19360 0.95010 0.93473 0.93457 1.22449 1.01734 0.94281 1.01243 1.23031 0.93372 1.01519 0.88354 1.67683 1.17216 1.11415 1.26358 1.23160 0.94895 0.89208 0.98986 1.22484 1.00031 1.02810 0.93493 1.21170 0.98456 1.00178 0.92842 0.91066 0.92148 0.93966 0.84517 0.91966 0.95399 0.92856 0.91259 0.89813 0.91812 0.91284 0.86169 0.83522 0.83303 0.83759 0.80774 0.80093 0.82255 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.95 9.10 71.98 0.66 -4.29 16 2 C 0.12 3.86 2.79 44.17 0.12 3.98 16 3 H 0.07 2.31 7.49 -2.39 -0.02 2.29 16 4 N -0.67 -25.34 5.56 -495.42 -2.75 -28.09 16 5 C 0.10 4.65 5.27 86.30 0.45 5.10 16 6 C 0.03 1.65 1.98 -52.90 -0.10 1.55 16 7 C -0.51 -26.99 9.00 25.60 0.23 -26.76 16 8 H 0.05 2.63 7.87 -2.91 -0.02 2.61 16 9 C 0.03 1.70 5.05 84.65 0.43 2.13 16 10 N -0.90 -48.31 11.06 21.45 0.24 -48.07 16 11 Si 0.94 41.39 29.57 68.60 2.03 43.42 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 C -0.17 -7.42 9.71 30.60 0.30 -7.12 16 16 C -0.21 -9.76 9.89 30.62 0.30 -9.46 16 17 C -0.06 -1.78 4.94 -19.90 -0.10 -1.88 16 18 C -0.10 -2.54 9.23 22.31 0.21 -2.33 16 19 C -0.12 -2.49 10.03 22.24 0.22 -2.27 16 20 C -0.11 -2.09 9.45 22.49 0.21 -1.87 16 21 C -0.07 -1.54 5.88 -20.05 -0.12 -1.66 16 22 C -0.01 -0.10 5.91 -19.84 -0.12 -0.22 16 23 C -0.18 -3.45 9.50 22.58 0.21 -3.23 16 24 C 0.09 1.74 11.17 84.62 0.95 2.69 16 25 N -0.52 -10.71 10.35 -196.12 -2.03 -12.74 16 26 C 0.09 1.55 11.17 84.61 0.95 2.50 16 27 C -0.17 -2.76 9.50 22.58 0.21 -2.55 16 28 C -0.11 -2.68 9.07 22.48 0.20 -2.47 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 31 H 0.04 1.45 7.65 -2.39 -0.02 1.43 16 32 H 0.34 13.07 7.99 -89.69 -0.72 12.35 16 33 H 0.06 3.13 4.84 -2.39 -0.01 3.12 16 34 H 0.03 1.26 7.66 -2.39 -0.02 1.24 16 35 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 36 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 38 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 40 H 0.12 3.14 7.47 -2.91 -0.02 3.12 16 41 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.15 1.94 6.30 -2.91 -0.02 1.92 16 43 H 0.14 2.46 6.34 -2.91 -0.02 2.45 16 44 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 46 H 0.16 1.72 6.34 -2.91 -0.02 1.70 16 47 H 0.13 2.88 6.24 -2.91 -0.02 2.86 16 Total: -1.00 -60.23 383.86 2.96 -57.26 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.26 Total: 36.39 kcal Atomic # 6 Polarization: -53.40 SS G_CDS: 5.22 Total: -48.18 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -4.54 Total: -88.89 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -60.23 2.96 -57.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430726927.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.290 kcal (2) G-P(sol) polarization free energy of solvation -60.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds