Wall clock time and date at job start Tue Mar 31 2020 14:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47345 * 2 1 4 4 N 1.46902 * 109.47098 * 239.99826 * 2 1 3 5 5 C 1.46898 * 110.99775 * 87.11195 * 4 2 1 6 6 C 1.53000 * 109.47279 * 185.13532 * 5 4 2 7 7 C 1.50705 * 115.55274 * 275.57578 * 6 5 4 8 8 H 1.08003 * 119.99783 * 114.46856 * 7 6 5 9 9 C 1.37879 * 119.99651 * 294.47618 * 7 6 5 10 10 N 1.31514 * 120.00158 * 353.05777 * 9 7 6 11 11 Si 1.86802 * 119.99792 * 173.06027 * 9 7 6 12 12 H 1.48502 * 109.47054 * 89.99710 * 11 9 7 13 13 H 1.48491 * 109.47038 * 209.99578 * 11 9 7 14 14 H 1.48501 * 109.46862 * 329.99733 * 11 9 7 15 15 C 1.52997 * 117.49742 * 129.86358 * 6 5 4 16 16 C 1.52998 * 117.49462 * 61.24156 * 6 5 4 17 17 C 1.50705 * 109.47049 * 119.99979 * 2 1 3 18 18 C 1.38326 * 119.87676 * 74.10512 * 17 2 1 19 19 C 1.38015 * 120.12325 * 180.27404 * 18 17 2 20 20 C 1.39350 * 119.87316 * 359.97438 * 19 18 17 21 21 C 1.48372 * 120.11825 * 179.97438 * 20 19 18 22 22 C 1.39772 * 120.90116 * 179.74532 * 21 20 19 23 23 C 1.37977 * 119.01559 * 179.72810 * 22 21 20 24 24 N 1.31922 * 120.88465 * 0.55652 * 23 22 21 25 25 C 1.31925 * 122.00436 * 359.71650 * 24 23 22 26 26 C 1.37984 * 120.88112 * 359.97438 * 25 24 23 27 27 C 1.39349 * 119.76037 * 0.02562 * 20 19 18 28 28 C 1.38018 * 119.87362 * 359.97438 * 27 20 19 29 29 H 1.09003 * 109.46931 * 299.99836 * 1 2 3 30 30 H 1.09000 * 109.46717 * 59.99951 * 1 2 3 31 31 H 1.08999 * 109.46828 * 179.97438 * 1 2 3 32 32 H 1.00899 * 111.00122 * 211.06324 * 4 2 1 33 33 H 1.09000 * 109.47246 * 305.14062 * 5 4 2 34 34 H 1.08998 * 109.46872 * 65.13684 * 5 4 2 35 35 H 0.97000 * 119.99916 * 185.01468 * 10 9 7 36 36 H 1.08991 * 117.50438 * 0.02562 * 15 6 5 37 37 H 1.09004 * 117.49751 * 145.02886 * 15 6 5 38 38 H 1.09007 * 117.49847 * 214.97920 * 16 6 5 39 39 H 1.09000 * 117.50286 * 359.97438 * 16 6 5 40 40 H 1.07998 * 119.93582 * 0.25178 * 18 17 2 41 41 H 1.07997 * 120.06202 * 179.97438 * 19 18 17 42 42 H 1.08001 * 120.49190 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.55695 * 180.27261 * 23 22 21 44 44 H 1.08003 * 119.56184 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.49127 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.06443 * 179.97438 * 27 20 19 47 47 H 1.08003 * 119.93606 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.1300 0.2340 -2.3340 6 6 2.5183 -0.5448 -3.5925 7 6 3.9934 -0.7951 -3.7728 8 1 4.3782 -1.8037 -3.7381 9 6 4.8517 0.2635 -3.9819 10 7 4.3710 1.4746 -4.1602 11 14 6.6975 -0.0225 -4.0118 12 1 7.1291 -0.3244 -5.4002 13 1 7.3952 1.1968 -3.5307 14 1 7.0353 -1.1673 -3.1283 15 6 1.6812 -0.3141 -4.8523 16 6 1.5533 -1.6280 -4.0787 17 6 2.0324 -0.7104 1.2305 18 6 1.9523 -2.0890 1.3112 19 6 2.4056 -2.7444 2.4380 20 6 2.9452 -2.0147 3.4955 21 6 3.4337 -2.7136 4.7097 22 6 3.9826 -1.9984 5.7777 23 6 4.4196 -2.6874 6.8904 24 7 4.3344 -4.0025 6.9492 25 6 3.8282 -4.7152 5.9611 26 6 3.3621 -4.1054 4.8144 27 6 3.0234 -0.6261 3.4088 28 6 2.5670 0.0189 2.2772 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9010 -1.1494 -1.0187 33 1 1.1719 0.7284 -2.4938 34 1 2.8934 0.9818 -2.1195 35 1 4.9689 2.2063 -4.3794 36 1 0.8543 0.3926 -4.7847 37 1 2.1975 -0.3434 -5.8119 38 1 1.9855 -2.5215 -4.5294 39 1 0.6422 -1.7862 -3.5018 40 1 1.5340 -2.6535 0.4910 41 1 2.3423 -3.8207 2.5001 42 1 4.0600 -0.9220 5.7343 43 1 4.8411 -2.1431 7.7225 44 1 3.7779 -5.7903 6.0509 45 1 2.9493 -4.6951 4.0092 46 1 3.4403 -0.0556 4.2257 47 1 2.6275 1.0951 2.2088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430728743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:55 Heat of formation + Delta-G solvation = 79.353471 kcal Electronic energy + Delta-G solvation = -25789.119083 eV Core-core repulsion = 22322.900439 eV Total energy + Delta-G solvation = -3466.218644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54999 -39.27193 -37.11810 -35.48564 -33.25163 -32.00138 -31.80663 -30.78221 -30.33990 -28.52715 -25.75709 -24.94488 -24.22959 -23.78422 -22.19928 -21.65700 -20.99151 -19.96481 -19.05117 -17.80887 -16.50047 -16.37350 -16.08617 -15.60741 -15.11365 -14.73832 -14.66315 -14.23620 -14.17662 -14.09596 -13.88803 -13.73059 -13.50463 -13.13443 -12.77572 -12.59968 -12.17706 -12.05668 -11.92773 -11.75832 -11.35913 -11.20517 -10.96549 -10.91494 -10.84668 -10.50235 -10.43602 -10.34782 -10.11679 -9.74377 -9.42974 -9.33289 -8.96257 -8.84002 -8.48762 -8.32663 -8.07560 -7.58660 -6.05485 -4.10294 0.41904 0.89588 1.39992 1.78510 3.25636 3.33355 3.36839 3.50771 3.91402 4.20011 4.26129 4.37412 4.44684 4.66790 4.76462 4.86230 4.89258 4.92606 4.99733 5.20277 5.31623 5.44197 5.46387 5.52053 5.55820 5.58326 5.63134 5.72077 5.90524 5.94844 5.99388 6.08575 6.16682 6.19971 6.34686 6.43675 6.47096 6.50730 6.52244 6.59331 6.65977 6.87587 6.91016 6.93621 6.95564 7.15484 7.50682 7.56280 7.72725 7.86884 7.92991 8.18718 8.48157 8.91497 9.53821 11.01977 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.002815 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.836890 B = 9945.864919 C =10854.746319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.116 3.884 3 H 0.047 0.953 4 N -0.676 5.676 5 C 0.106 3.894 6 C 0.054 3.946 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.070 3.930 10 N -0.880 5.880 11 Si 0.885 3.115 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.178 4.178 16 C -0.192 4.192 17 C -0.064 4.064 18 C -0.096 4.096 19 C -0.101 4.101 20 C -0.072 4.072 21 C 0.013 3.987 22 C -0.171 4.171 23 C 0.101 3.899 24 N -0.494 5.494 25 C 0.101 3.899 26 C -0.170 4.170 27 C -0.101 4.101 28 C -0.116 4.116 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.345 0.655 33 H 0.040 0.960 34 H 0.045 0.955 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.138 0.862 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 -5.297 18.143 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.006 3.994 3 H 0.065 0.935 4 N -0.308 5.308 5 C -0.022 4.022 6 C 0.053 3.947 7 C -0.532 4.532 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.516 5.516 11 Si 0.713 3.287 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.216 4.216 16 C -0.230 4.230 17 C -0.064 4.064 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.072 4.072 21 C 0.005 3.995 22 C -0.191 4.191 23 C -0.056 4.056 24 N -0.203 5.203 25 C -0.055 4.055 26 C -0.190 4.190 27 C -0.120 4.120 28 C -0.134 4.134 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.154 0.846 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.156 0.844 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.996 -5.733 18.741 20.225 hybrid contribution 1.561 1.024 -0.755 2.014 sum -3.435 -4.708 17.986 18.907 Atomic orbital electron populations 1.21757 0.94184 1.02134 1.00813 1.20500 0.95726 0.95526 0.87608 0.93464 1.60701 1.35249 1.31501 1.03309 1.21488 0.97876 0.93170 0.89698 1.18737 0.91359 0.95015 0.89586 1.20553 0.89864 0.92809 1.49951 0.92336 1.24979 0.98347 0.95120 0.94820 1.69978 1.34837 1.00070 1.46756 0.86695 0.85894 0.77715 0.78397 1.20670 1.21258 1.19772 1.22718 1.02509 0.97963 0.98438 1.22714 1.01915 0.92749 1.05597 1.20276 0.96476 0.94146 0.95524 1.21080 0.98723 0.94055 0.97554 1.21226 0.97992 0.99704 0.92997 1.18611 1.01902 0.93265 0.93437 1.19231 0.94085 0.93161 0.92996 1.22243 1.00829 1.01566 0.94452 1.22674 0.95776 0.90163 0.96951 1.67639 1.14727 1.08161 1.29817 1.22691 0.93623 1.00298 0.88894 1.22264 1.02177 0.94503 1.00008 1.21115 0.99519 0.93256 0.98073 1.21040 0.99017 1.00055 0.93296 0.93331 0.92329 0.92126 0.83650 0.94158 0.93664 0.93070 0.92191 0.90642 0.91225 0.91119 0.84478 0.85777 0.84582 0.82733 0.82667 0.84432 0.85935 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.36 37.16 0.35 -1.44 16 2 C 0.12 1.77 2.81 -68.86 -0.19 1.58 16 3 H 0.05 0.76 7.62 -51.93 -0.40 0.37 16 4 N -0.68 -12.32 5.74 -107.95 -0.62 -12.94 16 5 C 0.11 2.31 5.27 -3.83 -0.02 2.29 16 6 C 0.05 1.28 1.49 -155.66 -0.23 1.05 16 7 C -0.49 -13.09 8.82 -34.44 -0.30 -13.39 16 8 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 9 C 0.07 1.88 5.24 -17.82 -0.09 1.79 16 10 N -0.88 -24.37 12.58 55.43 0.70 -23.67 16 11 Si 0.89 20.77 29.55 -169.99 -5.02 15.74 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 C -0.18 -4.14 9.88 -26.73 -0.26 -4.40 16 16 C -0.19 -4.17 9.85 -26.73 -0.26 -4.43 16 17 C -0.06 -0.87 4.66 -104.56 -0.49 -1.36 16 18 C -0.10 -1.24 8.97 -39.63 -0.36 -1.60 16 19 C -0.10 -1.17 9.45 -39.25 -0.37 -1.54 16 20 C -0.07 -0.83 5.88 -104.90 -0.62 -1.45 16 21 C 0.01 0.14 5.91 -104.58 -0.62 -0.48 16 22 C -0.17 -1.62 9.50 -39.10 -0.37 -1.99 16 23 C 0.10 0.95 11.17 -17.61 -0.20 0.75 16 24 N -0.49 -5.39 10.35 -13.34 -0.14 -5.53 16 25 C 0.10 0.96 11.17 -17.60 -0.20 0.76 16 26 C -0.17 -1.63 9.50 -39.11 -0.37 -2.00 16 27 C -0.10 -1.15 9.45 -39.25 -0.37 -1.52 16 28 C -0.12 -1.44 9.65 -39.63 -0.38 -1.82 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.84 7.53 -51.93 -0.39 0.45 16 31 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.34 6.67 8.12 -39.29 -0.32 6.35 16 33 H 0.04 0.86 7.25 -51.93 -0.38 0.48 16 34 H 0.05 1.11 7.25 -51.93 -0.38 0.74 16 35 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.06 1.32 8.06 -51.93 -0.42 0.90 16 37 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.14 1.78 7.89 -52.49 -0.41 1.37 16 41 H 0.12 1.17 6.30 -52.49 -0.33 0.84 16 42 H 0.14 1.02 6.34 -52.49 -0.33 0.69 16 43 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.14 1.06 6.34 -52.48 -0.33 0.72 16 46 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 47 H 0.12 1.38 7.99 -52.48 -0.42 0.97 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -28.99 387.48 -11.54 -40.53 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.94 Total: 9.21 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -5.36 Total: -29.18 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.06 Total: -42.14 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.99 -11.54 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430728743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.884 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds