Wall clock time and date at job start Tue Mar 31 2020 14:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47345 * 2 1 4 4 N 1.46902 * 109.47098 * 239.99826 * 2 1 3 5 5 C 1.46898 * 110.99775 * 87.11195 * 4 2 1 6 6 C 1.53000 * 109.47279 * 185.13532 * 5 4 2 7 7 C 1.50705 * 115.55274 * 275.57578 * 6 5 4 8 8 H 1.08003 * 119.99783 * 114.46856 * 7 6 5 9 9 C 1.37879 * 119.99651 * 294.47618 * 7 6 5 10 10 N 1.31514 * 120.00158 * 353.05777 * 9 7 6 11 11 Si 1.86802 * 119.99792 * 173.06027 * 9 7 6 12 12 H 1.48502 * 109.47054 * 89.99710 * 11 9 7 13 13 H 1.48491 * 109.47038 * 209.99578 * 11 9 7 14 14 H 1.48501 * 109.46862 * 329.99733 * 11 9 7 15 15 C 1.52997 * 117.49742 * 129.86358 * 6 5 4 16 16 C 1.52998 * 117.49462 * 61.24156 * 6 5 4 17 17 C 1.50705 * 109.47049 * 119.99979 * 2 1 3 18 18 C 1.38326 * 119.87676 * 74.10512 * 17 2 1 19 19 C 1.38015 * 120.12325 * 180.27404 * 18 17 2 20 20 C 1.39350 * 119.87316 * 359.97438 * 19 18 17 21 21 C 1.48372 * 120.11825 * 179.97438 * 20 19 18 22 22 C 1.39772 * 120.90116 * 179.74532 * 21 20 19 23 23 C 1.37977 * 119.01559 * 179.72810 * 22 21 20 24 24 N 1.31922 * 120.88465 * 0.55652 * 23 22 21 25 25 C 1.31925 * 122.00436 * 359.71650 * 24 23 22 26 26 C 1.37984 * 120.88112 * 359.97438 * 25 24 23 27 27 C 1.39349 * 119.76037 * 0.02562 * 20 19 18 28 28 C 1.38018 * 119.87362 * 359.97438 * 27 20 19 29 29 H 1.09003 * 109.46931 * 299.99836 * 1 2 3 30 30 H 1.09000 * 109.46717 * 59.99951 * 1 2 3 31 31 H 1.08999 * 109.46828 * 179.97438 * 1 2 3 32 32 H 1.00899 * 111.00122 * 211.06324 * 4 2 1 33 33 H 1.09000 * 109.47246 * 305.14062 * 5 4 2 34 34 H 1.08998 * 109.46872 * 65.13684 * 5 4 2 35 35 H 0.97000 * 119.99916 * 185.01468 * 10 9 7 36 36 H 1.08991 * 117.50438 * 0.02562 * 15 6 5 37 37 H 1.09004 * 117.49751 * 145.02886 * 15 6 5 38 38 H 1.09007 * 117.49847 * 214.97920 * 16 6 5 39 39 H 1.09000 * 117.50286 * 359.97438 * 16 6 5 40 40 H 1.07998 * 119.93582 * 0.25178 * 18 17 2 41 41 H 1.07997 * 120.06202 * 179.97438 * 19 18 17 42 42 H 1.08001 * 120.49190 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.55695 * 180.27261 * 23 22 21 44 44 H 1.08003 * 119.56184 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.49127 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.06443 * 179.97438 * 27 20 19 47 47 H 1.08003 * 119.93606 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.1300 0.2340 -2.3340 6 6 2.5183 -0.5448 -3.5925 7 6 3.9934 -0.7951 -3.7728 8 1 4.3782 -1.8037 -3.7381 9 6 4.8517 0.2635 -3.9819 10 7 4.3710 1.4746 -4.1602 11 14 6.6975 -0.0225 -4.0118 12 1 7.1291 -0.3244 -5.4002 13 1 7.3952 1.1968 -3.5307 14 1 7.0353 -1.1673 -3.1283 15 6 1.6812 -0.3141 -4.8523 16 6 1.5533 -1.6280 -4.0787 17 6 2.0324 -0.7104 1.2305 18 6 1.9523 -2.0890 1.3112 19 6 2.4056 -2.7444 2.4380 20 6 2.9452 -2.0147 3.4955 21 6 3.4337 -2.7136 4.7097 22 6 3.9826 -1.9984 5.7777 23 6 4.4196 -2.6874 6.8904 24 7 4.3344 -4.0025 6.9492 25 6 3.8282 -4.7152 5.9611 26 6 3.3621 -4.1054 4.8144 27 6 3.0234 -0.6261 3.4088 28 6 2.5670 0.0189 2.2772 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9010 -1.1494 -1.0187 33 1 1.1719 0.7284 -2.4938 34 1 2.8934 0.9818 -2.1195 35 1 4.9689 2.2063 -4.3794 36 1 0.8543 0.3926 -4.7847 37 1 2.1975 -0.3434 -5.8119 38 1 1.9855 -2.5215 -4.5294 39 1 0.6422 -1.7862 -3.5018 40 1 1.5340 -2.6535 0.4910 41 1 2.3423 -3.8207 2.5001 42 1 4.0600 -0.9220 5.7343 43 1 4.8411 -2.1431 7.7225 44 1 3.7779 -5.7903 6.0509 45 1 2.9493 -4.6951 4.0092 46 1 3.4403 -0.0556 4.2257 47 1 2.6275 1.0951 2.2088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430728743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:54 Heat of formation + Delta-G solvation = 65.867249 kcal Electronic energy + Delta-G solvation = -25789.703890 eV Core-core repulsion = 22322.900439 eV Total energy + Delta-G solvation = -3466.803450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32281 -40.21510 -38.74213 -36.82046 -34.23861 -34.01780 -32.56122 -31.64892 -31.53556 -29.53535 -27.70063 -26.33741 -25.11851 -24.81637 -23.11625 -22.84652 -22.52243 -21.07842 -20.91392 -18.63525 -18.04436 -17.26544 -17.13442 -16.75357 -16.62806 -16.21045 -15.63975 -15.56656 -15.30350 -15.07154 -14.91461 -14.80714 -14.66001 -14.36412 -13.98855 -13.71120 -13.52418 -13.35380 -13.17844 -12.93812 -12.85979 -12.78868 -12.74135 -12.45324 -12.24972 -11.96940 -11.77763 -11.66078 -11.27380 -11.10608 -10.79657 -10.46582 -10.41795 -10.11027 -9.95513 -9.87528 -9.22211 -9.14210 -8.09933 -6.19786 -0.40883 0.21358 0.48184 0.91985 1.38375 1.41456 1.49930 2.41366 2.68830 3.07918 3.14416 3.29518 3.43972 3.59832 3.71215 3.78902 3.80147 4.02519 4.11009 4.14194 4.20963 4.36173 4.38235 4.46240 4.55367 4.64281 4.68482 4.71229 4.78663 4.83406 4.84667 4.87941 4.97193 5.05040 5.09058 5.11178 5.12706 5.15679 5.21684 5.30470 5.37956 5.45511 5.63535 5.64951 5.67819 5.70863 5.76135 5.87624 6.00696 6.36562 6.46640 6.61210 6.89491 7.03003 7.46681 8.96837 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.002815 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.836890 B = 9945.864919 C =10854.746319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.118 3.882 3 H 0.035 0.965 4 N -0.667 5.667 5 C 0.124 3.876 6 C 0.030 3.970 7 C -0.507 4.507 8 H 0.050 0.950 9 C 0.028 3.972 10 N -0.906 5.906 11 Si 0.942 3.058 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.269 1.269 15 C -0.185 4.185 16 C -0.166 4.166 17 C -0.080 4.080 18 C -0.104 4.104 19 C -0.104 4.104 20 C -0.071 4.071 21 C -0.006 4.006 22 C -0.173 4.173 23 C 0.093 3.907 24 N -0.517 5.517 25 C 0.093 3.907 26 C -0.173 4.173 27 C -0.103 4.103 28 C -0.123 4.123 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.337 0.663 33 H 0.042 0.958 34 H 0.010 0.990 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.179 0.821 45 H 0.154 0.846 46 H 0.146 0.854 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.693 -6.238 19.906 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.008 3.992 3 H 0.053 0.947 4 N -0.298 5.298 5 C -0.005 4.005 6 C 0.029 3.971 7 C -0.545 4.545 8 H 0.068 0.932 9 C -0.172 4.172 10 N -0.544 5.544 11 Si 0.769 3.231 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.224 4.224 16 C -0.204 4.204 17 C -0.081 4.081 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.072 4.072 21 C -0.014 4.014 22 C -0.192 4.192 23 C -0.063 4.063 24 N -0.227 5.227 25 C -0.063 4.063 26 C -0.192 4.192 27 C -0.121 4.121 28 C -0.142 4.142 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.172 0.828 43 H 0.196 0.804 44 H 0.196 0.804 45 H 0.171 0.829 46 H 0.164 0.836 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.954 -6.687 20.509 22.133 hybrid contribution 1.540 1.272 -1.226 2.344 sum -3.414 -5.415 19.282 20.317 Atomic orbital electron populations 1.21698 0.92819 1.02445 1.01228 1.20521 0.96705 0.94746 0.87221 0.94718 1.60681 1.34526 1.30762 1.03795 1.21134 0.96543 0.92568 0.90257 1.18860 0.90729 0.96878 0.90594 1.20803 0.91551 0.92444 1.49671 0.93160 1.25601 1.02004 0.94947 0.94692 1.70081 1.35960 1.00642 1.47697 0.85792 0.81432 0.77558 0.78344 1.20416 1.21158 1.19312 1.22671 1.02696 0.99571 0.97433 1.22677 1.01690 0.91809 1.04188 1.20150 0.98106 0.94557 0.95288 1.21082 0.99273 0.93771 0.98062 1.21443 0.97480 1.00823 0.92474 1.18809 1.01145 0.93506 0.93694 1.19353 0.95157 0.93825 0.93097 1.22479 1.00143 1.02556 0.94043 1.23103 0.95521 0.89978 0.97713 1.67677 1.15381 1.09022 1.30608 1.23102 0.93147 1.01463 0.88571 1.22489 1.01836 0.94372 1.00525 1.21377 0.98980 0.93502 0.98257 1.21184 0.98992 1.00565 0.93447 0.91437 0.93352 0.91807 0.84497 0.93948 0.97191 0.93216 0.91199 0.92503 0.91161 0.89211 0.84925 0.83791 0.82804 0.80407 0.80435 0.82866 0.83631 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 9.36 71.98 0.67 -2.60 16 2 C 0.12 3.57 2.81 44.17 0.12 3.69 16 3 H 0.03 1.14 7.62 -2.39 -0.02 1.12 16 4 N -0.67 -24.37 5.74 -495.44 -2.84 -27.22 16 5 C 0.12 5.49 5.27 86.30 0.46 5.95 16 6 C 0.03 1.45 1.49 -52.93 -0.08 1.37 16 7 C -0.51 -27.14 8.82 25.60 0.23 -26.91 16 8 H 0.05 2.71 7.82 -2.91 -0.02 2.68 16 9 C 0.03 1.50 5.24 84.66 0.44 1.95 16 10 N -0.91 -51.06 12.58 21.45 0.27 -50.79 16 11 Si 0.94 42.92 29.55 68.60 2.03 44.95 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 C -0.19 -8.64 9.88 30.59 0.30 -8.33 16 16 C -0.17 -7.07 9.85 30.59 0.30 -6.76 16 17 C -0.08 -2.14 4.66 -19.82 -0.09 -2.24 16 18 C -0.10 -2.58 8.97 22.24 0.20 -2.38 16 19 C -0.10 -2.25 9.45 22.48 0.21 -2.03 16 20 C -0.07 -1.51 5.88 -20.04 -0.12 -1.63 16 21 C -0.01 -0.12 5.91 -19.84 -0.12 -0.24 16 22 C -0.17 -2.89 9.50 22.58 0.21 -2.67 16 23 C 0.09 1.55 11.17 84.62 0.95 2.50 16 24 N -0.52 -10.35 10.35 -196.12 -2.03 -12.38 16 25 C 0.09 1.58 11.17 84.62 0.95 2.53 16 26 C -0.17 -2.95 9.50 22.58 0.21 -2.74 16 27 C -0.10 -2.14 9.45 22.49 0.21 -1.93 16 28 C -0.12 -2.94 9.65 22.24 0.21 -2.72 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.36 7.53 -2.39 -0.02 1.34 16 31 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 32 H 0.34 13.18 8.12 -89.69 -0.73 12.45 16 33 H 0.04 1.82 7.25 -2.39 -0.02 1.81 16 34 H 0.01 0.50 7.25 -2.39 -0.02 0.48 16 35 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 36 H 0.07 3.07 8.06 -2.39 -0.02 3.05 16 37 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 39 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.13 3.36 7.89 -2.91 -0.02 3.33 16 41 H 0.14 2.41 6.30 -2.91 -0.02 2.39 16 42 H 0.15 1.88 6.34 -2.91 -0.02 1.86 16 43 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.15 1.99 6.34 -2.91 -0.02 1.97 16 46 H 0.15 2.24 6.30 -2.91 -0.02 2.22 16 47 H 0.13 2.83 7.99 -2.91 -0.02 2.80 16 Total: -1.00 -61.85 387.48 2.95 -58.90 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.24 Total: 31.76 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 5.28 Total: -45.22 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -4.60 Total: -90.39 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -61.85 2.95 -58.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430728743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.767 kcal (2) G-P(sol) polarization free energy of solvation -61.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds