Wall clock time and date at job start Tue Mar 31 2020 14:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47304 * 2 1 4 4 N 1.46895 * 109.47206 * 119.99580 * 2 1 3 5 5 C 1.46894 * 111.00363 * 278.18458 * 4 2 1 6 6 C 1.53002 * 109.47150 * 175.01727 * 5 4 2 7 7 C 1.50702 * 115.54777 * 151.42610 * 6 5 4 8 8 H 1.07996 * 120.00126 * 143.45785 * 7 6 5 9 9 C 1.37880 * 119.99963 * 323.44916 * 7 6 5 10 10 N 1.31520 * 119.99923 * 171.74456 * 9 7 6 11 11 Si 1.86797 * 120.00017 * 351.75157 * 9 7 6 12 12 H 1.48503 * 109.47239 * 95.66377 * 11 9 7 13 13 H 1.48498 * 109.47369 * 215.66181 * 11 9 7 14 14 H 1.48497 * 109.47325 * 335.66267 * 11 9 7 15 15 C 1.52997 * 117.50147 * 5.71769 * 6 5 4 16 16 C 1.52993 * 117.50030 * 297.09029 * 6 5 4 17 17 C 1.50699 * 109.47151 * 239.99810 * 2 1 3 18 18 C 1.38320 * 119.87614 * 286.56514 * 17 2 1 19 19 C 1.38017 * 120.12112 * 179.76152 * 18 17 2 20 20 C 1.39350 * 119.87617 * 0.53395 * 19 18 17 21 21 C 1.48374 * 120.12293 * 179.69939 * 20 19 18 22 22 C 1.39763 * 120.90312 * 179.74524 * 21 20 19 23 23 C 1.37980 * 119.02097 * 179.72916 * 22 21 20 24 24 N 1.31927 * 120.87654 * 0.55673 * 23 22 21 25 25 C 1.31931 * 122.00636 * 359.71235 * 24 23 22 26 26 C 1.37978 * 120.87877 * 0.02562 * 25 24 23 27 27 C 1.39357 * 119.75445 * 359.72105 * 20 19 18 28 28 C 1.38011 * 119.87757 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47391 * 300.00163 * 1 2 3 31 31 H 1.08997 * 109.47508 * 59.99978 * 1 2 3 32 32 H 1.00903 * 110.99876 * 154.22777 * 4 2 1 33 33 H 1.08996 * 109.47294 * 295.01966 * 5 4 2 34 34 H 1.09007 * 109.47150 * 55.01655 * 5 4 2 35 35 H 0.96998 * 119.99333 * 180.02562 * 10 9 7 36 36 H 1.09001 * 117.49742 * 359.97438 * 15 6 5 37 37 H 1.08995 * 117.50138 * 145.01577 * 15 6 5 38 38 H 1.09004 * 117.50085 * 214.97871 * 16 6 5 39 39 H 1.08998 * 117.50076 * 359.97438 * 16 6 5 40 40 H 1.07999 * 119.94082 * 359.97438 * 18 17 2 41 41 H 1.08001 * 120.06550 * 180.23124 * 19 18 17 42 42 H 1.08003 * 120.49284 * 359.97438 * 22 21 20 43 43 H 1.07990 * 119.56146 * 180.27043 * 23 22 21 44 44 H 1.07998 * 119.55377 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.48525 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.05751 * 179.97438 * 27 20 19 47 47 H 1.07990 * 119.94098 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0111 0.2025 2.3643 6 6 2.4076 -0.5846 3.6150 7 6 3.0841 0.2148 4.6987 8 1 2.8851 -0.0062 5.7369 9 6 3.9572 1.2283 4.3647 10 7 4.4218 2.0302 5.2979 11 14 4.4803 1.4624 2.5868 12 1 3.6209 2.4923 1.9495 13 1 5.8975 1.9034 2.5417 14 1 4.3381 0.1777 1.8557 15 6 2.8526 -2.0360 3.4248 16 6 1.4901 -1.7292 4.0498 17 6 2.0323 -0.7104 -1.2304 18 6 1.9396 -2.0878 -1.3169 19 6 2.3936 -2.7432 -2.4435 20 6 2.9563 -2.0157 -3.4903 21 6 3.4522 -2.7153 -4.7011 22 6 4.0146 -2.0013 -5.7629 23 6 4.4685 -2.6918 -6.8679 24 7 4.3668 -4.0055 -6.9342 25 6 3.8377 -4.7161 -5.9566 26 6 3.3640 -4.1056 -4.8136 27 6 3.0520 -0.6286 -3.3955 28 6 2.5891 0.0169 -2.2670 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9400 -1.0762 1.0450 33 1 2.7218 1.0133 2.2048 34 1 1.0115 0.6164 2.4972 35 1 5.0357 2.7434 5.0628 36 1 2.8625 -2.4303 2.4087 37 1 3.6350 -2.4130 4.0834 38 1 1.3762 -1.9043 5.1196 39 1 0.6039 -1.9212 3.4450 40 1 1.5080 -2.6512 -0.5028 41 1 2.3173 -3.8184 -2.5116 42 1 4.0965 -0.9254 -5.7175 43 1 4.9086 -2.1493 -7.6914 44 1 3.7738 -5.7899 -6.0528 45 1 2.9316 -4.6934 -4.0174 46 1 3.4876 -0.0600 -4.2038 47 1 2.6631 1.0917 -2.1923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430728744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:58 Heat of formation + Delta-G solvation = 102.607037 kcal Electronic energy + Delta-G solvation = -26107.032164 eV Core-core repulsion = 22641.821871 eV Total energy + Delta-G solvation = -3465.210293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.65717 -39.46385 -37.74654 -35.59921 -33.38336 -32.22564 -31.90885 -30.90763 -30.55697 -28.67547 -26.74093 -24.99570 -24.31823 -23.82967 -22.33879 -21.82251 -21.28963 -20.16650 -18.97302 -17.95258 -16.93050 -16.57448 -16.26867 -15.91982 -15.55273 -15.36124 -14.85261 -14.37392 -14.31935 -14.20155 -14.00012 -13.74278 -13.44560 -13.29355 -12.91777 -12.82110 -12.59992 -12.39402 -12.15813 -12.06102 -11.69978 -11.45696 -11.15453 -10.96499 -10.80293 -10.49430 -10.43810 -10.28157 -9.82361 -9.77764 -9.51155 -9.41086 -9.22223 -9.10831 -8.85727 -8.46205 -8.33577 -7.91944 -6.18730 -4.13016 0.30191 0.81370 1.25277 1.65565 3.13262 3.24657 3.32062 3.39733 3.78622 4.11748 4.15070 4.27295 4.33785 4.45224 4.64288 4.72400 4.76849 4.78189 4.84003 4.88649 5.19877 5.27303 5.33699 5.39615 5.42308 5.43124 5.48725 5.51730 5.74291 5.81897 5.83155 5.85445 5.92261 5.95822 6.03089 6.18327 6.23139 6.31099 6.35468 6.36549 6.38116 6.52077 6.65386 6.69288 6.77901 6.88699 7.13112 7.31383 7.38474 7.64872 7.67039 7.82783 8.48736 8.86484 9.43795 10.93056 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.002809 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.538324 B = 9967.302751 C =10282.924167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.113 3.887 3 H 0.047 0.953 4 N -0.677 5.677 5 C 0.088 3.912 6 C 0.009 3.991 7 C -0.480 4.480 8 H 0.078 0.922 9 C 0.068 3.932 10 N -0.894 5.894 11 Si 0.911 3.089 12 H -0.289 1.289 13 H -0.304 1.304 14 H -0.269 1.269 15 C -0.202 4.202 16 C -0.179 4.179 17 C -0.068 4.068 18 C -0.094 4.094 19 C -0.101 4.101 20 C -0.068 4.068 21 C 0.011 3.989 22 C -0.170 4.170 23 C 0.101 3.899 24 N -0.493 5.493 25 C 0.102 3.898 26 C -0.169 4.169 27 C -0.101 4.101 28 C -0.116 4.116 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.344 0.656 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.265 0.735 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.138 0.862 46 H 0.124 0.876 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 -8.068 -22.420 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 H 0.064 0.936 4 N -0.310 5.310 5 C -0.039 4.039 6 C 0.007 3.993 7 C -0.518 4.518 8 H 0.096 0.904 9 C -0.134 4.134 10 N -0.530 5.530 11 Si 0.745 3.255 12 H -0.218 1.218 13 H -0.233 1.233 14 H -0.195 1.195 15 C -0.240 4.240 16 C -0.217 4.217 17 C -0.068 4.068 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.069 4.069 21 C 0.003 3.997 22 C -0.190 4.190 23 C -0.055 4.055 24 N -0.202 5.202 25 C -0.054 4.054 26 C -0.189 4.189 27 C -0.119 4.119 28 C -0.134 4.134 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.173 0.827 44 H 0.174 0.826 45 H 0.156 0.844 46 H 0.142 0.858 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.477 -8.613 -22.955 24.923 hybrid contribution 0.835 1.329 -0.257 1.590 sum -3.642 -7.284 -23.212 24.599 Atomic orbital electron populations 1.21767 0.93472 1.02509 1.01298 1.20524 0.96289 0.95327 0.87529 0.93550 1.60905 1.31636 1.35923 1.02553 1.21838 0.99768 0.93164 0.89137 1.19303 0.99097 0.87082 0.93786 1.20466 1.24012 1.14723 0.92551 0.90425 1.25090 0.95795 0.95081 0.97458 1.69909 1.32379 1.17434 1.33311 0.86497 0.75724 0.77902 0.85399 1.21810 1.23304 1.19479 1.23051 0.97201 1.03948 0.99765 1.22659 0.93108 1.06965 0.98934 1.20173 0.96972 0.94223 0.95455 1.21066 0.98729 0.93916 0.97556 1.21240 0.97903 0.99798 0.92994 1.18638 1.01396 0.93260 0.93559 1.19212 0.94332 0.93190 0.92969 1.22244 1.00677 1.01555 0.94535 1.22689 0.95750 0.90155 0.96897 1.67650 1.14661 1.08226 1.29667 1.22704 0.93477 1.00328 0.88940 1.22258 1.02091 0.94470 1.00054 1.21128 0.99467 0.93301 0.98014 1.21047 0.98813 1.00099 0.93456 0.91800 0.91988 0.92935 0.83519 0.96105 0.90991 0.92503 0.90394 0.90662 0.90760 0.90652 0.84467 0.85634 0.84575 0.82663 0.82601 0.84433 0.85768 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.30 37.16 0.35 -1.34 16 2 C 0.11 1.63 2.80 -68.87 -0.19 1.44 16 3 H 0.05 0.72 7.69 -51.93 -0.40 0.32 16 4 N -0.68 -11.48 4.71 -107.96 -0.51 -11.99 16 5 C 0.09 1.81 4.42 -3.83 -0.02 1.80 16 6 C 0.01 0.20 1.86 -155.66 -0.29 -0.09 16 7 C -0.48 -13.28 9.59 -34.44 -0.33 -13.61 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 10 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 11 Si 0.91 21.90 24.32 -169.99 -4.13 17.77 16 12 H -0.29 -6.81 6.94 56.52 0.39 -6.42 16 13 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 14 H -0.27 -6.02 5.31 56.52 0.30 -5.72 16 15 C -0.20 -4.16 9.39 -26.73 -0.25 -4.41 16 16 C -0.18 -3.66 9.91 -26.73 -0.26 -3.92 16 17 C -0.07 -0.87 4.67 -104.56 -0.49 -1.36 16 18 C -0.09 -1.12 9.07 -39.63 -0.36 -1.48 16 19 C -0.10 -1.07 9.45 -39.25 -0.37 -1.44 16 20 C -0.07 -0.73 5.88 -104.89 -0.62 -1.35 16 21 C 0.01 0.11 5.91 -104.59 -0.62 -0.51 16 22 C -0.17 -1.50 9.50 -39.11 -0.37 -1.87 16 23 C 0.10 0.89 11.17 -17.61 -0.20 0.70 16 24 N -0.49 -5.08 10.35 -13.34 -0.14 -5.22 16 25 C 0.10 0.90 11.17 -17.60 -0.20 0.70 16 26 C -0.17 -1.49 9.50 -39.11 -0.37 -1.86 16 27 C -0.10 -1.06 9.45 -39.25 -0.37 -1.43 16 28 C -0.12 -1.36 9.65 -39.63 -0.38 -1.74 16 29 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 30 H 0.06 0.83 7.19 -51.93 -0.37 0.46 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.34 6.12 5.97 -39.29 -0.23 5.88 16 33 H 0.02 0.48 1.89 -51.93 -0.10 0.38 16 34 H 0.07 1.43 7.12 -51.93 -0.37 1.06 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 1.46 6.35 -51.93 -0.33 1.13 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.14 1.62 7.91 -52.49 -0.42 1.20 16 41 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 42 H 0.14 0.93 6.34 -52.48 -0.33 0.59 16 43 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.14 0.95 6.34 -52.49 -0.33 0.61 16 46 H 0.12 1.03 6.30 -52.49 -0.33 0.70 16 47 H 0.12 1.32 7.98 -52.49 -0.42 0.90 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -30.80 371.31 -10.44 -41.24 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.59 Total: 8.65 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -5.44 Total: -29.98 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.13 Total: -43.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.13 Total: 17.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.80 -10.44 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430728744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.849 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds