Wall clock time and date at job start Tue Mar 31 2020 14:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47304 * 2 1 4 4 N 1.46895 * 109.47206 * 119.99580 * 2 1 3 5 5 C 1.46894 * 111.00363 * 278.18458 * 4 2 1 6 6 C 1.53002 * 109.47150 * 175.01727 * 5 4 2 7 7 C 1.50702 * 115.54777 * 151.42610 * 6 5 4 8 8 H 1.07996 * 120.00126 * 143.45785 * 7 6 5 9 9 C 1.37880 * 119.99963 * 323.44916 * 7 6 5 10 10 N 1.31520 * 119.99923 * 171.74456 * 9 7 6 11 11 Si 1.86797 * 120.00017 * 351.75157 * 9 7 6 12 12 H 1.48503 * 109.47239 * 95.66377 * 11 9 7 13 13 H 1.48498 * 109.47369 * 215.66181 * 11 9 7 14 14 H 1.48497 * 109.47325 * 335.66267 * 11 9 7 15 15 C 1.52997 * 117.50147 * 5.71769 * 6 5 4 16 16 C 1.52993 * 117.50030 * 297.09029 * 6 5 4 17 17 C 1.50699 * 109.47151 * 239.99810 * 2 1 3 18 18 C 1.38320 * 119.87614 * 286.56514 * 17 2 1 19 19 C 1.38017 * 120.12112 * 179.76152 * 18 17 2 20 20 C 1.39350 * 119.87617 * 0.53395 * 19 18 17 21 21 C 1.48374 * 120.12293 * 179.69939 * 20 19 18 22 22 C 1.39763 * 120.90312 * 179.74524 * 21 20 19 23 23 C 1.37980 * 119.02097 * 179.72916 * 22 21 20 24 24 N 1.31927 * 120.87654 * 0.55673 * 23 22 21 25 25 C 1.31931 * 122.00636 * 359.71235 * 24 23 22 26 26 C 1.37978 * 120.87877 * 0.02562 * 25 24 23 27 27 C 1.39357 * 119.75445 * 359.72105 * 20 19 18 28 28 C 1.38011 * 119.87757 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47391 * 300.00163 * 1 2 3 31 31 H 1.08997 * 109.47508 * 59.99978 * 1 2 3 32 32 H 1.00903 * 110.99876 * 154.22777 * 4 2 1 33 33 H 1.08996 * 109.47294 * 295.01966 * 5 4 2 34 34 H 1.09007 * 109.47150 * 55.01655 * 5 4 2 35 35 H 0.96998 * 119.99333 * 180.02562 * 10 9 7 36 36 H 1.09001 * 117.49742 * 359.97438 * 15 6 5 37 37 H 1.08995 * 117.50138 * 145.01577 * 15 6 5 38 38 H 1.09004 * 117.50085 * 214.97871 * 16 6 5 39 39 H 1.08998 * 117.50076 * 359.97438 * 16 6 5 40 40 H 1.07999 * 119.94082 * 359.97438 * 18 17 2 41 41 H 1.08001 * 120.06550 * 180.23124 * 19 18 17 42 42 H 1.08003 * 120.49284 * 359.97438 * 22 21 20 43 43 H 1.07990 * 119.56146 * 180.27043 * 23 22 21 44 44 H 1.07998 * 119.55377 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.48525 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.05751 * 179.97438 * 27 20 19 47 47 H 1.07990 * 119.94098 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0111 0.2025 2.3643 6 6 2.4076 -0.5846 3.6150 7 6 3.0841 0.2148 4.6987 8 1 2.8851 -0.0062 5.7369 9 6 3.9572 1.2283 4.3647 10 7 4.4218 2.0302 5.2979 11 14 4.4803 1.4624 2.5868 12 1 3.6209 2.4923 1.9495 13 1 5.8975 1.9034 2.5417 14 1 4.3381 0.1777 1.8557 15 6 2.8526 -2.0360 3.4248 16 6 1.4901 -1.7292 4.0498 17 6 2.0323 -0.7104 -1.2304 18 6 1.9396 -2.0878 -1.3169 19 6 2.3936 -2.7432 -2.4435 20 6 2.9563 -2.0157 -3.4903 21 6 3.4522 -2.7153 -4.7011 22 6 4.0146 -2.0013 -5.7629 23 6 4.4685 -2.6918 -6.8679 24 7 4.3668 -4.0055 -6.9342 25 6 3.8377 -4.7161 -5.9566 26 6 3.3640 -4.1056 -4.8136 27 6 3.0520 -0.6286 -3.3955 28 6 2.5891 0.0169 -2.2670 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9400 -1.0762 1.0450 33 1 2.7218 1.0133 2.2048 34 1 1.0115 0.6164 2.4972 35 1 5.0357 2.7434 5.0628 36 1 2.8625 -2.4303 2.4087 37 1 3.6350 -2.4130 4.0834 38 1 1.3762 -1.9043 5.1196 39 1 0.6039 -1.9212 3.4450 40 1 1.5080 -2.6512 -0.5028 41 1 2.3173 -3.8184 -2.5116 42 1 4.0965 -0.9254 -5.7175 43 1 4.9086 -2.1493 -7.6914 44 1 3.7738 -5.7899 -6.0528 45 1 2.9316 -4.6934 -4.0174 46 1 3.4876 -0.0600 -4.2038 47 1 2.6631 1.0917 -2.1923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430728744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:57 Heat of formation + Delta-G solvation = 85.826167 kcal Electronic energy + Delta-G solvation = -26107.759837 eV Core-core repulsion = 22641.821871 eV Total energy + Delta-G solvation = -3465.937967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.35378 -40.35805 -39.20813 -36.82691 -34.43035 -34.19047 -32.57972 -31.70598 -31.61724 -29.57231 -28.58365 -26.33260 -25.13926 -24.84278 -23.21216 -22.95472 -22.56507 -21.17309 -20.86035 -18.83414 -18.38418 -17.70196 -17.31903 -17.12995 -16.76935 -16.33229 -15.63038 -15.46658 -15.35273 -15.17305 -14.96183 -14.84410 -14.77664 -14.57110 -14.24761 -14.00228 -13.83988 -13.59311 -13.19893 -12.95685 -12.93586 -12.80977 -12.61042 -12.38983 -11.93944 -11.86564 -11.74092 -11.53024 -11.35150 -11.22270 -11.14858 -10.63048 -10.47297 -10.25189 -10.12077 -9.90866 -9.37340 -9.25361 -8.35518 -6.34271 -0.43624 0.20331 0.45046 0.88833 1.20385 1.30977 1.41505 2.25181 2.65355 2.84800 3.05531 3.21782 3.41086 3.52490 3.58908 3.70196 3.72825 4.00077 4.06055 4.12435 4.16676 4.18684 4.22993 4.32435 4.42469 4.48692 4.54962 4.61451 4.63621 4.69232 4.81287 4.83196 4.86763 4.94018 4.95676 5.03934 5.08056 5.12553 5.14076 5.22728 5.31692 5.41712 5.45859 5.58450 5.62970 5.65758 5.68427 5.75057 5.96250 6.03729 6.33089 6.36725 6.69986 7.02301 7.25743 8.79890 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.002809 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.538324 B = 9967.302751 C =10282.924167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.113 3.887 3 H 0.036 0.964 4 N -0.666 5.666 5 C 0.099 3.901 6 C -0.020 4.020 7 C -0.488 4.488 8 H 0.031 0.969 9 C 0.010 3.990 10 N -0.946 5.946 11 Si 0.980 3.020 12 H -0.281 1.281 13 H -0.314 1.314 14 H -0.243 1.243 15 C -0.184 4.184 16 C -0.164 4.164 17 C -0.083 4.083 18 C -0.100 4.100 19 C -0.104 4.104 20 C -0.069 4.069 21 C -0.008 4.008 22 C -0.172 4.172 23 C 0.092 3.908 24 N -0.518 5.518 25 C 0.092 3.908 26 C -0.171 4.171 27 C -0.104 4.104 28 C -0.124 4.124 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.341 0.659 33 H 0.003 0.997 34 H 0.076 0.924 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.178 0.822 44 H 0.178 0.822 45 H 0.155 0.845 46 H 0.145 0.855 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -9.466 -25.859 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.004 3.996 3 H 0.054 0.946 4 N -0.299 5.299 5 C -0.030 4.030 6 C -0.021 4.021 7 C -0.526 4.526 8 H 0.049 0.951 9 C -0.187 4.187 10 N -0.585 5.585 11 Si 0.811 3.189 12 H -0.209 1.209 13 H -0.243 1.243 14 H -0.168 1.168 15 C -0.222 4.222 16 C -0.201 4.201 17 C -0.084 4.084 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.069 4.069 21 C -0.016 4.016 22 C -0.192 4.192 23 C -0.064 4.064 24 N -0.227 5.227 25 C -0.063 4.063 26 C -0.191 4.191 27 C -0.122 4.122 28 C -0.143 4.143 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.021 0.979 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.195 0.805 44 H 0.195 0.805 45 H 0.173 0.827 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.043 -10.039 -26.404 28.695 hybrid contribution 0.959 1.689 0.842 2.116 sum -4.084 -8.351 -25.562 27.200 Atomic orbital electron populations 1.21729 0.92283 1.02923 1.01610 1.20567 0.97209 0.94724 0.87119 0.94556 1.60843 1.31283 1.35138 1.02590 1.21566 0.99299 0.92614 0.89476 1.19231 1.01011 0.87827 0.94073 1.20692 1.24373 1.15438 0.92076 0.95090 1.25955 0.95830 0.94790 1.02161 1.70063 1.33850 1.18682 1.35913 0.85372 0.74432 0.79069 0.80041 1.20893 1.24349 1.16777 1.23012 0.96887 1.01264 1.00996 1.22680 0.93973 1.04524 0.98896 1.20055 0.98487 0.94663 0.95178 1.21099 0.99047 0.93576 0.98080 1.21465 0.97322 1.00907 0.92469 1.18825 1.00799 0.93488 0.93792 1.19350 0.95256 0.93826 0.93121 1.22476 1.00037 1.02526 0.94147 1.23098 0.95633 0.89977 0.97672 1.67680 1.15407 1.09100 1.30542 1.23112 0.93078 1.01455 0.88697 1.22487 1.01703 0.94360 1.00501 1.21374 0.99046 0.93544 0.98202 1.21191 0.98850 1.00593 0.93645 0.91300 0.92965 0.91342 0.83859 0.97942 0.90609 0.92491 0.87603 0.91918 0.91791 0.88044 0.84453 0.83655 0.82830 0.80517 0.80463 0.82715 0.83714 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.30 71.98 0.67 -2.26 16 2 C 0.11 2.98 2.80 44.17 0.12 3.11 16 3 H 0.04 1.05 7.69 -2.38 -0.02 1.03 16 4 N -0.67 -20.75 4.71 -495.47 -2.33 -23.08 16 5 C 0.10 3.88 4.42 86.31 0.38 4.26 16 6 C -0.02 -0.91 1.86 -52.93 -0.10 -1.01 16 7 C -0.49 -27.85 9.59 25.60 0.25 -27.61 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C 0.01 0.57 5.45 84.65 0.46 1.03 16 10 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 11 Si 0.98 45.79 24.32 68.60 1.67 47.46 16 12 H -0.28 -12.61 6.94 99.48 0.69 -11.92 16 13 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 14 H -0.24 -10.17 5.31 99.48 0.53 -9.64 16 15 C -0.18 -7.23 9.39 30.59 0.29 -6.94 16 16 C -0.16 -6.42 9.91 30.59 0.30 -6.12 16 17 C -0.08 -1.91 4.67 -19.82 -0.09 -2.00 16 18 C -0.10 -2.08 9.07 22.24 0.20 -1.88 16 19 C -0.10 -1.88 9.45 22.49 0.21 -1.67 16 20 C -0.07 -1.27 5.88 -20.04 -0.12 -1.39 16 21 C -0.01 -0.13 5.91 -19.84 -0.12 -0.25 16 22 C -0.17 -2.57 9.50 22.58 0.21 -2.36 16 23 C 0.09 1.41 11.17 84.62 0.95 2.36 16 24 N -0.52 -9.64 10.35 -196.13 -2.03 -11.67 16 25 C 0.09 1.42 11.17 84.62 0.95 2.37 16 26 C -0.17 -2.56 9.50 22.58 0.21 -2.34 16 27 C -0.10 -1.88 9.45 22.49 0.21 -1.66 16 28 C -0.12 -2.59 9.65 22.24 0.21 -2.37 16 29 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 30 H 0.05 1.29 7.19 -2.38 -0.02 1.27 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.34 11.00 5.97 -89.69 -0.54 10.47 16 33 H 0.00 0.15 1.89 -2.39 0.00 0.14 16 34 H 0.08 2.90 7.12 -2.38 -0.02 2.88 16 35 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.11 3.59 6.35 -2.39 -0.02 3.58 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.14 2.81 7.91 -2.91 -0.02 2.78 16 41 H 0.15 1.94 6.30 -2.91 -0.02 1.93 16 42 H 0.15 1.61 6.34 -2.91 -0.02 1.59 16 43 H 0.18 1.72 8.06 -2.92 -0.02 1.69 16 44 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.16 1.63 6.34 -2.91 -0.02 1.62 16 46 H 0.15 1.91 6.30 -2.91 -0.02 1.89 16 47 H 0.13 2.46 7.98 -2.92 -0.02 2.43 16 Total: -1.00 -68.58 371.31 3.07 -65.50 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.26 Total: 27.40 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 5.21 Total: -46.74 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -4.06 Total: -93.62 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.67 Total: 47.46 kcal Total: -68.58 3.07 -65.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430728744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.330 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds