Wall clock time and date at job start Tue Mar 31 2020 14:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00234 * 2 1 4 4 H 1.09002 * 109.44828 * 330.02966 * 3 2 1 5 5 C 1.53035 * 109.46000 * 89.99895 * 3 2 1 6 6 C 1.53200 * 109.31043 * 181.38304 * 5 3 2 7 7 N 1.46920 * 108.77409 * 305.36609 * 6 5 3 8 8 C 1.34776 * 120.62902 * 233.58112 * 7 6 5 9 9 O 1.21845 * 120.00049 * 180.02562 * 8 7 6 10 10 N 1.33831 * 120.00113 * 0.02562 * 8 7 6 11 11 C 1.32938 * 120.00329 * 179.97438 * 10 8 7 12 12 C 1.41211 * 126.37432 * 359.95792 * 11 10 8 13 13 C 1.34958 * 108.24206 * 179.78726 * 12 11 10 14 14 N 1.36453 * 108.94469 * 0.40159 * 13 12 11 15 15 C 1.46500 * 125.85098 * 179.85890 * 14 13 12 16 16 C 1.50696 * 109.47323 * 274.69432 * 15 14 13 17 17 H 1.07995 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00210 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 N 1.37420 * 126.38007 * 179.97438 * 11 10 8 25 25 H 0.96996 * 126.36484 * 359.94212 * 24 11 10 26 26 C 1.46927 * 118.74072 * 53.86539 * 7 6 5 27 27 H 1.08997 * 109.58819 * 186.35179 * 26 7 6 28 28 C 1.52996 * 109.58908 * 65.91793 * 26 7 6 29 29 C 1.53045 * 109.45849 * 210.07001 * 3 2 1 30 30 H 1.08996 * 109.46804 * 300.00388 * 1 2 3 31 31 H 1.08996 * 109.46939 * 59.99938 * 1 2 3 32 32 H 1.09002 * 109.47454 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49748 * 61.43723 * 5 3 2 34 34 H 1.08997 * 109.50143 * 301.33749 * 5 3 2 35 35 H 1.09000 * 109.58295 * 185.57738 * 6 5 3 36 36 H 1.08992 * 109.58354 * 65.15691 * 6 5 3 37 37 H 1.08001 * 125.87740 * 0.02562 * 12 11 10 38 38 H 1.07994 * 125.52578 * 180.23729 * 13 12 11 39 39 H 1.09004 * 109.47134 * 154.68744 * 15 14 13 40 40 H 1.09010 * 109.47025 * 34.69179 * 15 14 13 41 41 H 0.97000 * 119.99462 * 359.97438 * 19 18 16 42 42 H 1.09000 * 109.46712 * 60.00684 * 28 26 7 43 43 H 1.09001 * 109.46896 * 179.97438 * 28 26 7 44 44 H 1.08999 * 109.47149 * 300.00286 * 28 26 7 45 45 H 1.09005 * 109.49234 * 298.56497 * 29 3 2 46 46 H 1.08999 * 109.49623 * 58.62644 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3445 1.9992 -0.5135 5 6 2.2177 1.7712 1.4429 6 6 2.8088 3.1845 1.4391 7 7 4.0310 3.1837 0.6237 8 6 5.1927 3.6453 1.1273 9 8 6.1993 3.6397 0.4408 10 7 5.2408 4.1098 2.3815 11 6 6.3868 4.5647 2.8785 12 6 7.6278 4.6193 2.2069 13 6 8.5407 5.1482 3.0485 14 7 7.9359 5.4276 4.2394 15 6 8.5861 6.0090 5.4163 16 6 9.2277 4.9137 6.2284 17 1 9.1578 3.8870 5.9008 18 6 9.9032 5.2221 7.3901 19 7 9.9879 6.4723 7.7894 20 14 10.6979 3.8642 8.3971 21 1 9.7233 3.3518 9.3935 22 1 11.1130 2.7585 7.4968 23 1 11.8891 4.4027 9.1015 24 7 6.5845 5.0689 4.1415 25 1 5.9135 5.1598 4.8359 26 6 3.9612 2.6759 -0.7533 27 1 4.9635 2.6379 -1.1800 28 6 3.0765 3.5972 -1.5955 29 6 3.3585 1.2632 -0.7230 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.9029 1.0917 1.9496 34 1 1.2603 1.7786 1.9640 35 1 3.0504 3.4823 2.4594 36 1 2.0865 3.8815 1.0142 37 1 7.8134 4.2973 1.1929 38 1 9.5816 5.3197 2.8179 39 1 7.8428 6.5245 6.0246 40 1 9.3492 6.7187 5.0964 41 1 9.5755 7.1775 7.2663 42 1 3.4995 4.6018 -1.6009 43 1 3.0265 3.2190 -2.6166 44 1 2.0738 3.6273 -1.1693 45 1 4.0330 0.5884 -0.1959 46 1 3.2131 0.9084 -1.7434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441676968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:07 Heat of formation + Delta-G solvation = 26.503171 kcal Electronic energy + Delta-G solvation = -27320.536057 eV Core-core repulsion = 23441.176389 eV Total energy + Delta-G solvation = -3879.359668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.87431 -39.98736 -38.33693 -36.50610 -34.50200 -33.19750 -32.34190 -31.62006 -31.08691 -30.30356 -28.03867 -26.52125 -26.28451 -23.97685 -23.36718 -22.73266 -21.78998 -21.32183 -20.15662 -18.53534 -17.77048 -17.07156 -16.75707 -16.23228 -15.94806 -15.34331 -15.13677 -14.99388 -14.69038 -14.47961 -14.18077 -13.98620 -13.90328 -13.51905 -13.28011 -12.99117 -12.92523 -12.81697 -12.45709 -12.32775 -12.14843 -12.01066 -11.68873 -11.43800 -11.33800 -11.16640 -11.01029 -10.95883 -10.37511 -10.32499 -10.28074 -9.74588 -9.65179 -9.24340 -9.03345 -8.86338 -8.34531 -8.29590 -7.01739 -6.73918 -4.68629 1.71571 1.98917 3.08993 3.21396 3.24342 3.33596 3.40842 3.57295 4.16664 4.32089 4.55937 4.60197 4.74930 4.86739 4.92016 5.03115 5.09745 5.13784 5.15864 5.19067 5.33159 5.38627 5.44643 5.46078 5.57347 5.63365 5.75048 5.79281 5.84413 5.92554 5.94499 6.09211 6.11366 6.19755 6.22778 6.32380 6.36162 6.67049 7.03603 7.10537 7.23413 7.28356 7.54441 7.68954 7.97995 8.19802 8.28178 8.41541 9.01923 9.54762 10.49002 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.002442 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.926773 B =11465.488304 C =12141.197769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.090 3.910 4 H 0.062 0.938 5 C -0.156 4.156 6 C 0.127 3.873 7 N -0.607 5.607 8 C 0.691 3.309 9 O -0.630 6.630 10 N -0.709 5.709 11 C 0.488 3.512 12 C -0.331 4.331 13 C 0.162 3.838 14 N -0.345 5.345 15 C 0.246 3.754 16 C -0.634 4.634 17 H 0.065 0.935 18 C 0.031 3.969 19 N -0.895 5.895 20 Si 1.077 2.923 21 H -0.284 1.284 22 H -0.284 1.284 23 H -0.279 1.279 24 N -0.471 5.471 25 H 0.444 0.556 26 C 0.155 3.845 27 H 0.104 0.896 28 C -0.161 4.161 29 C -0.123 4.123 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.269 0.731 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.540 -5.232 -13.177 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.032 3.968 4 H 0.080 0.920 5 C -0.194 4.194 6 C 0.003 3.997 7 N -0.342 5.342 8 C 0.392 3.608 9 O -0.512 6.512 10 N -0.473 5.473 11 C 0.234 3.766 12 C -0.363 4.363 13 C 0.017 3.983 14 N -0.131 5.131 15 C 0.129 3.871 16 C -0.672 4.672 17 H 0.083 0.917 18 C -0.176 4.176 19 N -0.528 5.528 20 Si 0.904 3.096 21 H -0.210 1.210 22 H -0.210 1.210 23 H -0.205 1.205 24 N -0.194 5.194 25 H 0.291 0.709 26 C 0.050 3.950 27 H 0.122 0.878 28 C -0.220 4.220 29 C -0.162 4.162 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.201 0.799 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.692 -5.565 -11.420 18.677 hybrid contribution -1.070 0.508 -1.249 1.722 sum -14.761 -5.056 -12.670 20.099 Atomic orbital electron populations 1.22753 0.81493 1.02478 0.99800 1.87923 1.19303 1.28306 1.95083 1.22196 0.94788 0.84084 0.95722 0.91999 1.22456 1.01552 0.98395 0.97032 1.21395 0.85994 0.94410 0.97867 1.46883 1.08405 1.66297 1.12658 1.16517 0.81956 0.77990 0.84366 1.90719 1.33600 1.62740 1.64165 1.68023 1.23952 1.38589 1.16717 1.18724 0.91070 0.84459 0.82315 1.22409 0.91964 1.17526 1.04444 1.22789 0.98988 0.93116 0.83366 1.47614 0.95990 1.55314 1.14197 1.20036 0.92331 0.94786 0.79926 1.22312 1.39558 0.94494 1.10882 0.91681 1.25974 0.94937 1.00948 0.95729 1.70856 1.41643 0.99915 1.40432 0.83394 0.76805 0.73810 0.75628 1.21007 1.21004 1.20465 1.44384 1.00844 1.60220 1.13985 0.70938 1.20987 1.00842 0.90953 0.82237 0.87772 1.22173 0.99940 1.00422 0.99440 1.22078 0.95597 0.97571 1.00952 0.94134 0.94242 0.89879 0.90732 0.91278 0.87773 0.93019 0.79886 0.79696 0.94190 0.92553 0.92068 0.92126 0.91757 0.92640 0.90700 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.43 10.35 -35.23 -0.36 -4.80 16 3 C 0.09 0.97 2.36 -26.69 -0.06 0.91 16 4 H 0.06 0.59 6.13 -51.93 -0.32 0.27 16 5 C -0.16 -1.80 5.70 -26.61 -0.15 -1.95 16 6 C 0.13 1.66 6.01 -3.71 -0.02 1.63 16 7 N -0.61 -9.47 2.68 -170.89 -0.46 -9.93 16 8 C 0.69 13.53 8.22 -87.76 -0.72 12.80 16 9 O -0.63 -13.64 12.67 5.06 0.06 -13.57 16 10 N -0.71 -13.81 9.05 -15.79 -0.14 -13.95 16 11 C 0.49 9.46 8.07 -155.28 -1.25 8.21 16 12 C -0.33 -6.22 9.52 -39.62 -0.38 -6.60 16 13 C 0.16 2.78 11.45 -16.66 -0.19 2.58 16 14 N -0.35 -6.47 3.63 -62.24 -0.23 -6.69 16 15 C 0.25 5.11 5.50 -5.20 -0.03 5.08 16 16 C -0.63 -15.34 9.39 -34.44 -0.32 -15.66 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 19 N -0.89 -23.51 13.65 55.43 0.76 -22.76 16 20 Si 1.08 22.60 29.90 -169.99 -5.08 17.51 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 24 N -0.47 -8.44 7.38 31.33 0.23 -8.21 16 25 H 0.44 7.00 8.96 -182.56 -1.64 5.37 16 26 C 0.15 2.03 3.22 -67.38 -0.22 1.81 16 27 H 0.10 1.56 7.00 -51.93 -0.36 1.20 16 28 C -0.16 -1.70 9.03 37.16 0.34 -1.37 16 29 C -0.12 -1.44 5.23 -26.38 -0.14 -1.58 16 30 H 0.04 0.29 7.85 -51.93 -0.41 -0.12 16 31 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 35 H 0.10 1.50 6.85 -51.93 -0.36 1.15 16 36 H 0.05 0.59 7.48 -51.93 -0.39 0.20 16 37 H 0.18 3.64 5.77 -52.49 -0.30 3.33 16 38 H 0.19 2.54 8.06 -52.49 -0.42 2.11 16 39 H 0.04 0.84 8.01 -51.93 -0.42 0.43 16 40 H 0.06 1.15 8.01 -51.92 -0.42 0.74 16 41 H 0.27 6.84 7.22 -40.82 -0.29 6.54 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.53 5.71 -51.93 -0.30 0.23 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -30.31 370.25 -9.99 -40.29 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -8.19 Total: 8.63 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -2.16 Total: 7.89 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.16 Total: -61.54 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.30 Total: -18.37 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.08 Total: 17.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.31 -9.99 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441676968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.794 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds