Wall clock time and date at job start Tue Mar 31 2020 14:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00234 * 2 1 4 4 H 1.09002 * 109.44828 * 330.02966 * 3 2 1 5 5 C 1.53035 * 109.46000 * 89.99895 * 3 2 1 6 6 C 1.53200 * 109.31043 * 181.38304 * 5 3 2 7 7 N 1.46920 * 108.77409 * 305.36609 * 6 5 3 8 8 C 1.34776 * 120.62902 * 233.58112 * 7 6 5 9 9 O 1.21845 * 120.00049 * 180.02562 * 8 7 6 10 10 N 1.33831 * 120.00113 * 0.02562 * 8 7 6 11 11 C 1.32938 * 120.00329 * 179.97438 * 10 8 7 12 12 C 1.41211 * 126.37432 * 359.95792 * 11 10 8 13 13 C 1.34958 * 108.24206 * 179.78726 * 12 11 10 14 14 N 1.36453 * 108.94469 * 0.40159 * 13 12 11 15 15 C 1.46500 * 125.85098 * 179.85890 * 14 13 12 16 16 C 1.50696 * 109.47323 * 274.69432 * 15 14 13 17 17 H 1.07995 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00210 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 N 1.37420 * 126.38007 * 179.97438 * 11 10 8 25 25 H 0.96996 * 126.36484 * 359.94212 * 24 11 10 26 26 C 1.46927 * 118.74072 * 53.86539 * 7 6 5 27 27 H 1.08997 * 109.58819 * 186.35179 * 26 7 6 28 28 C 1.52996 * 109.58908 * 65.91793 * 26 7 6 29 29 C 1.53045 * 109.45849 * 210.07001 * 3 2 1 30 30 H 1.08996 * 109.46804 * 300.00388 * 1 2 3 31 31 H 1.08996 * 109.46939 * 59.99938 * 1 2 3 32 32 H 1.09002 * 109.47454 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49748 * 61.43723 * 5 3 2 34 34 H 1.08997 * 109.50143 * 301.33749 * 5 3 2 35 35 H 1.09000 * 109.58295 * 185.57738 * 6 5 3 36 36 H 1.08992 * 109.58354 * 65.15691 * 6 5 3 37 37 H 1.08001 * 125.87740 * 0.02562 * 12 11 10 38 38 H 1.07994 * 125.52578 * 180.23729 * 13 12 11 39 39 H 1.09004 * 109.47134 * 154.68744 * 15 14 13 40 40 H 1.09010 * 109.47025 * 34.69179 * 15 14 13 41 41 H 0.97000 * 119.99462 * 359.97438 * 19 18 16 42 42 H 1.09000 * 109.46712 * 60.00684 * 28 26 7 43 43 H 1.09001 * 109.46896 * 179.97438 * 28 26 7 44 44 H 1.08999 * 109.47149 * 300.00286 * 28 26 7 45 45 H 1.09005 * 109.49234 * 298.56497 * 29 3 2 46 46 H 1.08999 * 109.49623 * 58.62644 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3445 1.9992 -0.5135 5 6 2.2177 1.7712 1.4429 6 6 2.8088 3.1845 1.4391 7 7 4.0310 3.1837 0.6237 8 6 5.1927 3.6453 1.1273 9 8 6.1993 3.6397 0.4408 10 7 5.2408 4.1098 2.3815 11 6 6.3868 4.5647 2.8785 12 6 7.6278 4.6193 2.2069 13 6 8.5407 5.1482 3.0485 14 7 7.9359 5.4276 4.2394 15 6 8.5861 6.0090 5.4163 16 6 9.2277 4.9137 6.2284 17 1 9.1578 3.8870 5.9008 18 6 9.9032 5.2221 7.3901 19 7 9.9879 6.4723 7.7894 20 14 10.6979 3.8642 8.3971 21 1 9.7233 3.3518 9.3935 22 1 11.1130 2.7585 7.4968 23 1 11.8891 4.4027 9.1015 24 7 6.5845 5.0689 4.1415 25 1 5.9135 5.1598 4.8359 26 6 3.9612 2.6759 -0.7533 27 1 4.9635 2.6379 -1.1800 28 6 3.0765 3.5972 -1.5955 29 6 3.3585 1.2632 -0.7230 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.9029 1.0917 1.9496 34 1 1.2603 1.7786 1.9640 35 1 3.0504 3.4823 2.4594 36 1 2.0865 3.8815 1.0142 37 1 7.8134 4.2973 1.1929 38 1 9.5816 5.3197 2.8179 39 1 7.8428 6.5245 6.0246 40 1 9.3492 6.7187 5.0964 41 1 9.5755 7.1775 7.2663 42 1 3.4995 4.6018 -1.6009 43 1 3.0265 3.2190 -2.6166 44 1 2.0738 3.6273 -1.1693 45 1 4.0330 0.5884 -0.1959 46 1 3.2131 0.9084 -1.7434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441676968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:06 Heat of formation + Delta-G solvation = 8.028335 kcal Electronic energy + Delta-G solvation = -27321.337186 eV Core-core repulsion = 23441.176389 eV Total energy + Delta-G solvation = -3880.160797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.34772 -41.14750 -39.47927 -37.58836 -36.22572 -34.78046 -33.52519 -32.69559 -32.50482 -31.85719 -28.97444 -27.95881 -27.20241 -25.32959 -24.74752 -23.95941 -23.02301 -22.73342 -21.47321 -19.81369 -19.33034 -18.39934 -18.03527 -17.39397 -17.28907 -16.65014 -16.27502 -16.03661 -15.91179 -15.80679 -15.63237 -15.36764 -14.97180 -14.81729 -14.47636 -14.38054 -14.20879 -14.02177 -13.83549 -13.61871 -13.26287 -13.16267 -12.86938 -12.62158 -12.59005 -12.25446 -12.08892 -11.98939 -11.92019 -11.87495 -11.25185 -11.22019 -10.93536 -10.73706 -10.56539 -10.48931 -9.86126 -9.56198 -8.88523 -8.32060 -6.63787 0.24279 0.51472 1.53750 1.57237 1.61923 1.77495 2.11414 2.44991 2.76580 2.85977 2.99178 3.12505 3.64497 3.82238 3.84366 4.00871 4.11103 4.16352 4.19911 4.29125 4.39164 4.45177 4.46445 4.51376 4.58075 4.58457 4.61119 4.73113 4.79554 4.86466 4.89848 4.95067 5.01679 5.03565 5.11964 5.16745 5.21917 5.40266 5.46143 5.76932 5.90757 5.95347 6.08081 6.29676 6.30478 6.39401 6.77536 6.96400 7.12027 8.06311 8.55956 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.002442 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.926773 B =11465.488304 C =12141.197769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.095 3.905 4 H 0.085 0.915 5 C -0.148 4.148 6 C 0.126 3.874 7 N -0.605 5.605 8 C 0.675 3.325 9 O -0.660 6.660 10 N -0.713 5.713 11 C 0.473 3.527 12 C -0.343 4.343 13 C 0.175 3.825 14 N -0.351 5.351 15 C 0.256 3.744 16 C -0.639 4.639 17 H 0.050 0.950 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 1.114 2.886 21 H -0.277 1.277 22 H -0.276 1.276 23 H -0.279 1.279 24 N -0.467 5.467 25 H 0.451 0.549 26 C 0.150 3.850 27 H 0.078 0.922 28 C -0.152 4.152 29 C -0.118 4.118 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.173 0.827 38 H 0.221 0.779 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.266 0.734 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.095 -5.655 -13.885 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.037 3.963 4 H 0.103 0.897 5 C -0.187 4.187 6 C 0.003 3.997 7 N -0.340 5.340 8 C 0.375 3.625 9 O -0.545 6.545 10 N -0.477 5.477 11 C 0.219 3.781 12 C -0.376 4.376 13 C 0.032 3.968 14 N -0.137 5.137 15 C 0.138 3.862 16 C -0.677 4.677 17 H 0.069 0.931 18 C -0.210 4.210 19 N -0.555 5.555 20 Si 0.937 3.063 21 H -0.203 1.203 22 H -0.201 1.201 23 H -0.204 1.204 24 N -0.191 5.191 25 H 0.300 0.700 26 C 0.046 3.954 27 H 0.096 0.904 28 C -0.210 4.210 29 C -0.156 4.156 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.190 0.810 38 H 0.237 0.763 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.307 -6.000 -12.147 20.442 hybrid contribution -0.658 0.598 -1.089 1.406 sum -15.965 -5.402 -13.236 21.430 Atomic orbital electron populations 1.22980 0.79603 1.03691 1.00962 1.87898 1.21426 1.28374 1.95166 1.22123 0.94559 0.84645 0.94937 0.89681 1.22382 1.01775 0.96616 0.97935 1.21510 0.85357 0.95990 0.96821 1.47057 1.08031 1.65106 1.13805 1.16891 0.82856 0.78390 0.84341 1.90688 1.34974 1.64130 1.64735 1.68093 1.24067 1.38730 1.16835 1.18945 0.91494 0.84757 0.82871 1.22311 0.92394 1.18564 1.04337 1.23295 1.00122 0.91281 0.82106 1.47497 0.96391 1.55638 1.14170 1.19782 0.92340 0.93901 0.80155 1.22501 1.39329 0.94634 1.11200 0.93123 1.27019 0.95293 1.01841 0.96869 1.70934 1.43019 1.00474 1.41074 0.82904 0.76315 0.72188 0.74928 1.20250 1.20107 1.20397 1.44345 1.00784 1.60103 1.13843 0.70034 1.21146 1.00459 0.92583 0.81237 0.90371 1.22101 0.99740 0.98809 1.00336 1.21998 0.95709 0.95849 1.02049 0.93316 0.92658 0.88813 0.93391 0.89012 0.89476 0.90602 0.80986 0.76265 0.94303 0.91639 0.92454 0.93640 0.89277 0.90986 0.93296 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -8.49 10.35 -148.98 -1.54 -10.03 16 3 C 0.09 1.86 2.36 30.62 0.07 1.93 16 4 H 0.09 1.30 6.13 -2.39 -0.01 1.28 16 5 C -0.15 -3.24 5.70 30.67 0.17 -3.06 16 6 C 0.13 3.17 6.01 86.37 0.52 3.69 16 7 N -0.61 -18.97 2.68 -812.72 -2.17 -21.14 16 8 C 0.67 27.12 8.22 179.35 1.47 28.60 16 9 O -0.66 -29.68 12.67 -4.81 -0.06 -29.74 16 10 N -0.71 -28.34 9.05 -322.54 -2.92 -31.26 16 11 C 0.47 18.57 8.07 133.95 1.08 19.66 16 12 C -0.34 -13.04 9.52 22.25 0.21 -12.83 16 13 C 0.18 5.86 11.45 83.22 0.95 6.82 16 14 N -0.35 -12.89 3.63 -350.83 -1.28 -14.17 16 15 C 0.26 10.42 5.50 85.63 0.47 10.89 16 16 C -0.64 -30.44 9.39 25.60 0.24 -30.20 16 17 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16 18 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 19 N -0.92 -47.92 13.65 21.45 0.29 -47.63 16 20 Si 1.11 44.79 29.90 68.60 2.05 46.84 16 21 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 23 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 24 N -0.47 -16.67 7.38 -54.78 -0.40 -17.07 16 25 H 0.45 14.22 8.96 -213.29 -1.91 12.31 16 26 C 0.15 3.88 3.22 45.12 0.15 4.02 16 27 H 0.08 2.43 7.00 -2.39 -0.02 2.41 16 28 C -0.15 -2.89 9.03 71.98 0.65 -2.24 16 29 C -0.12 -2.63 5.23 30.82 0.16 -2.47 16 30 H 0.05 0.55 7.85 -2.39 -0.02 0.53 16 31 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.59 7.85 -2.39 -0.02 1.57 16 35 H 0.09 2.51 6.85 -2.39 -0.02 2.49 16 36 H 0.08 1.56 7.48 -2.39 -0.02 1.54 16 37 H 0.17 7.03 5.77 -2.91 -0.02 7.02 16 38 H 0.22 5.57 8.06 -2.91 -0.02 5.55 16 39 H 0.04 1.61 8.01 -2.38 -0.02 1.59 16 40 H 0.07 2.60 8.01 -2.38 -0.02 2.58 16 41 H 0.27 13.45 7.22 -92.71 -0.67 12.78 16 42 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.13 5.71 -2.39 -0.01 1.12 16 45 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -65.80 370.25 1.00 -64.80 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.81 Total: 33.03 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 7.84 Total: 26.38 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -6.48 Total: -131.27 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -1.60 Total: -39.77 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.05 Total: 46.84 kcal Total: -65.80 1.00 -64.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441676968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.829 kcal (2) G-P(sol) polarization free energy of solvation -65.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds