Wall clock time and date at job start Tue Mar 31 2020 14:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.09002 * 109.46327 * 29.99936 * 3 2 1 5 5 C 1.53040 * 109.45994 * 270.02589 * 3 2 1 6 6 C 1.53191 * 109.31208 * 178.60362 * 5 3 2 7 7 N 1.46925 * 108.76661 * 54.65561 * 6 5 3 8 8 C 1.34776 * 120.63139 * 126.40329 * 7 6 5 9 9 O 1.21838 * 120.00117 * 179.97438 * 8 7 6 10 10 N 1.33832 * 120.00179 * 359.97438 * 8 7 6 11 11 C 1.32930 * 120.00465 * 179.97438 * 10 8 7 12 12 C 1.41214 * 126.37649 * 0.02562 * 11 10 8 13 13 C 1.34948 * 108.24708 * 179.97438 * 12 11 10 14 14 N 1.36456 * 108.94661 * 0.02562 * 13 12 11 15 15 C 1.46508 * 125.85224 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47004 * 84.97907 * 15 14 13 17 17 H 1.08005 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00209 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00205 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99796 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47184 * 89.99567 * 20 18 16 22 22 H 1.48497 * 109.47086 * 210.00120 * 20 18 16 23 23 H 1.48508 * 109.47016 * 329.99745 * 20 18 16 24 24 N 1.37415 * 126.38343 * 179.71105 * 11 10 8 25 25 H 0.97004 * 126.36358 * 0.02562 * 24 11 10 26 26 C 1.46924 * 118.73626 * 306.38027 * 7 6 5 27 27 H 1.09003 * 109.58585 * 173.39416 * 26 7 6 28 28 C 1.52992 * 109.70739 * 293.75336 * 26 7 6 29 29 C 1.53036 * 109.45735 * 149.97158 * 3 2 1 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 32 32 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.49495 * 298.56789 * 5 3 2 34 34 H 1.08994 * 109.50102 * 58.65949 * 5 3 2 35 35 H 1.08999 * 109.59931 * 294.86415 * 6 5 3 36 36 H 1.09006 * 109.58270 * 174.43535 * 6 5 3 37 37 H 1.07998 * 125.87319 * 359.95672 * 12 11 10 38 38 H 1.08003 * 125.53068 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.46990 * 204.97602 * 15 14 13 40 40 H 1.08996 * 109.46671 * 324.97412 * 15 14 13 41 41 H 0.96999 * 119.99934 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.47445 * 179.35992 * 28 26 7 43 43 H 1.09001 * 109.47233 * 299.36390 * 28 26 7 44 44 H 1.09003 * 109.47322 * 59.36059 * 28 26 7 45 45 H 1.09004 * 109.50125 * 301.33062 * 29 3 2 46 46 H 1.08994 * 109.50020 * 61.43666 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9993 0.5139 5 6 2.2170 1.7715 -1.4430 6 6 2.8077 3.1850 -1.4391 7 7 4.0304 3.1841 -0.6245 8 6 5.1919 3.6458 -1.1288 9 8 6.1988 3.6401 -0.4430 10 7 5.2391 4.1105 -2.3830 11 6 6.3845 4.5663 -2.8803 12 6 7.6257 4.6223 -2.2090 13 6 8.5390 5.1470 -3.0526 14 7 7.9323 5.4313 -4.2414 15 6 8.5819 6.0128 -5.4188 16 6 9.2241 4.9175 -6.2305 17 1 9.1549 3.8908 -5.9024 18 6 9.8990 5.2257 -7.3925 19 7 10.4599 4.2699 -8.1006 20 14 10.0181 7.0013 -7.9604 21 1 11.2349 7.6257 -7.3815 22 1 10.0978 7.0427 -9.4426 23 1 8.8162 7.7473 -7.5083 24 7 6.5828 5.0652 -4.1452 25 1 5.9127 5.1506 -4.8414 26 6 3.9628 2.6708 0.7505 27 1 4.9660 2.6294 1.1748 28 6 3.0834 3.5891 1.6013 29 6 3.3589 1.2631 0.7221 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9021 1.0921 -1.9501 34 1 1.2595 1.7789 -1.9637 35 1 2.0856 3.8818 -1.0136 36 1 3.0486 3.4830 -2.4596 37 1 7.8118 4.3009 -1.1949 38 1 9.5810 5.3155 -2.8237 39 1 7.8381 6.5273 -6.0271 40 1 9.3444 6.7231 -5.0993 41 1 10.9350 4.4869 -8.9179 42 1 3.0266 3.1987 2.6174 43 1 3.5147 4.5900 1.6202 44 1 2.0822 3.6330 1.1725 45 1 3.2142 0.9088 1.7427 46 1 4.0331 0.5886 0.1944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441676973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:10 Heat of formation + Delta-G solvation = 35.188551 kcal Electronic energy + Delta-G solvation = -27308.989597 eV Core-core repulsion = 23430.006555 eV Total energy + Delta-G solvation = -3878.983041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86009 -39.97739 -38.31962 -36.49301 -34.24215 -33.04915 -32.36221 -31.59980 -31.07303 -30.73650 -28.05557 -27.02201 -26.49615 -23.95635 -23.16454 -22.50115 -21.71052 -21.28583 -20.10389 -18.44057 -17.42055 -17.23940 -16.89292 -16.21720 -15.93919 -15.32560 -15.08811 -14.99064 -14.82218 -14.51000 -14.29911 -14.04331 -13.81655 -13.46489 -13.24443 -13.01925 -12.91047 -12.67011 -12.63373 -12.33761 -12.29626 -11.98405 -11.67643 -11.51367 -11.31543 -11.13771 -11.03920 -10.99774 -10.68882 -10.29310 -10.06305 -9.72553 -9.65860 -9.63132 -9.07789 -9.04560 -8.32772 -8.27983 -6.85547 -6.51445 -4.59915 1.72244 1.99856 2.96137 3.00522 3.07023 3.11515 3.35328 3.59432 3.97322 4.31413 4.57887 4.62316 4.76766 4.76993 4.94205 5.05179 5.11463 5.15605 5.17846 5.21041 5.35022 5.40520 5.46412 5.47973 5.58852 5.65282 5.76476 5.78699 5.86251 5.94362 5.94488 6.06746 6.11597 6.13997 6.22437 6.34318 6.34790 6.68532 6.93916 7.05614 7.12458 7.24911 7.55035 7.72005 7.99945 8.21567 8.42989 8.52720 9.00955 9.56537 10.60128 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024729 B = 0.002401 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.994975 B =11658.598143 C =12195.586516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.090 3.910 4 H 0.062 0.938 5 C -0.156 4.156 6 C 0.127 3.873 7 N -0.606 5.606 8 C 0.691 3.309 9 O -0.629 6.629 10 N -0.708 5.708 11 C 0.490 3.510 12 C -0.329 4.329 13 C 0.164 3.836 14 N -0.346 5.346 15 C 0.230 3.770 16 C -0.564 4.564 17 H 0.085 0.915 18 C 0.083 3.917 19 N -0.876 5.876 20 Si 0.875 3.125 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.265 1.265 24 N -0.471 5.471 25 H 0.444 0.556 26 C 0.155 3.845 27 H 0.104 0.896 28 C -0.161 4.161 29 C -0.124 4.124 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.104 0.896 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.272 0.728 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.460 0.109 13.566 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.032 3.968 4 H 0.080 0.920 5 C -0.195 4.195 6 C 0.003 3.997 7 N -0.342 5.342 8 C 0.392 3.608 9 O -0.512 6.512 10 N -0.472 5.472 11 C 0.236 3.764 12 C -0.362 4.362 13 C 0.020 3.980 14 N -0.132 5.132 15 C 0.112 3.888 16 C -0.602 4.602 17 H 0.103 0.897 18 C -0.123 4.123 19 N -0.512 5.512 20 Si 0.700 3.300 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.190 1.190 24 N -0.194 5.194 25 H 0.291 0.709 26 C 0.050 3.950 27 H 0.122 0.878 28 C -0.220 4.220 29 C -0.162 4.162 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.201 0.799 38 H 0.205 0.795 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.378 0.002 13.001 20.137 hybrid contribution 0.056 0.943 -0.634 1.137 sum -15.321 0.945 12.367 19.713 Atomic orbital electron populations 1.22754 0.81508 1.02473 0.99785 1.87927 1.19289 1.28300 1.95081 1.22193 0.94774 0.84078 0.95731 0.92018 1.22457 1.01573 0.98410 0.97027 1.21399 0.85972 0.94403 0.97887 1.46874 1.08412 1.66168 1.12760 1.16512 0.81938 0.78001 0.84350 1.90718 1.33540 1.62718 1.64180 1.68018 1.24042 1.38445 1.16695 1.18713 0.91061 0.84353 0.82305 1.22419 0.91916 1.17433 1.04431 1.22802 0.98955 0.92912 0.83321 1.47419 0.96257 1.55406 1.14160 1.20300 0.92897 0.94852 0.80767 1.21269 1.36158 0.94818 1.07976 0.89663 1.24834 0.94196 0.97666 0.95651 1.69858 1.33363 1.32528 1.15425 0.86891 0.79399 0.84458 0.79239 1.19353 1.20315 1.18963 1.44349 1.00921 1.60331 1.13774 0.70868 1.20888 1.00890 0.90967 0.82279 0.87789 1.22174 0.99968 1.00442 0.99389 1.22007 0.95606 0.97635 1.00985 0.94254 0.94135 0.89887 0.90691 0.91286 0.93032 0.87742 0.79870 0.79529 0.93439 0.92236 0.91725 0.91772 0.92148 0.92665 0.90526 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.46 10.35 -35.23 -0.36 -4.82 16 3 C 0.09 0.98 2.37 -26.69 -0.06 0.92 16 4 H 0.06 0.59 6.15 -51.93 -0.32 0.27 16 5 C -0.16 -1.81 5.69 -26.61 -0.15 -1.96 16 6 C 0.13 1.65 6.02 -3.71 -0.02 1.63 16 7 N -0.61 -9.42 2.68 -171.14 -0.46 -9.88 16 8 C 0.69 13.43 8.22 -87.76 -0.72 12.71 16 9 O -0.63 -13.53 12.67 5.07 0.06 -13.47 16 10 N -0.71 -13.63 9.05 -15.79 -0.14 -13.78 16 11 C 0.49 9.32 8.07 -155.30 -1.25 8.06 16 12 C -0.33 -6.07 9.52 -39.62 -0.38 -6.45 16 13 C 0.16 2.71 11.45 -16.66 -0.19 2.52 16 14 N -0.35 -6.22 3.63 -62.24 -0.23 -6.44 16 15 C 0.23 4.40 5.26 -5.19 -0.03 4.37 16 16 C -0.56 -13.68 9.94 -34.44 -0.34 -14.02 16 17 H 0.09 2.38 8.06 -52.48 -0.42 1.96 16 18 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.88 -24.01 13.96 55.43 0.77 -23.23 16 20 Si 0.87 17.88 27.47 -169.99 -4.67 13.21 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.03 6.54 56.52 0.37 -4.66 16 24 N -0.47 -8.17 7.38 31.33 0.23 -7.94 16 25 H 0.44 6.71 8.96 -182.55 -1.64 5.07 16 26 C 0.15 2.03 3.20 -67.60 -0.22 1.81 16 27 H 0.10 1.56 7.00 -51.93 -0.36 1.19 16 28 C -0.16 -1.69 9.03 37.15 0.34 -1.36 16 29 C -0.12 -1.45 5.20 -26.61 -0.14 -1.59 16 30 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.04 0.29 7.84 -51.93 -0.41 -0.11 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 35 H 0.05 0.59 7.49 -51.93 -0.39 0.20 16 36 H 0.10 1.50 6.85 -51.93 -0.36 1.14 16 37 H 0.18 3.58 5.77 -52.49 -0.30 3.28 16 38 H 0.19 2.42 8.06 -52.48 -0.42 1.99 16 39 H 0.05 0.88 7.20 -51.93 -0.37 0.50 16 40 H 0.06 1.04 7.57 -51.93 -0.39 0.65 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.53 5.74 -51.93 -0.30 0.23 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -31.08 367.99 -9.64 -40.72 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.22 Total: 10.12 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -2.17 Total: 9.97 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.18 Total: -61.27 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.30 Total: -18.29 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -4.67 Total: 13.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.08 -9.64 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441676973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.907 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds