Wall clock time and date at job start Tue Mar 31 2020 14:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.09002 * 109.46327 * 29.99936 * 3 2 1 5 5 C 1.53040 * 109.45994 * 270.02589 * 3 2 1 6 6 C 1.53191 * 109.31208 * 178.60362 * 5 3 2 7 7 N 1.46925 * 108.76661 * 54.65561 * 6 5 3 8 8 C 1.34776 * 120.63139 * 126.40329 * 7 6 5 9 9 O 1.21838 * 120.00117 * 179.97438 * 8 7 6 10 10 N 1.33832 * 120.00179 * 359.97438 * 8 7 6 11 11 C 1.32930 * 120.00465 * 179.97438 * 10 8 7 12 12 C 1.41214 * 126.37649 * 0.02562 * 11 10 8 13 13 C 1.34948 * 108.24708 * 179.97438 * 12 11 10 14 14 N 1.36456 * 108.94661 * 0.02562 * 13 12 11 15 15 C 1.46508 * 125.85224 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47004 * 84.97907 * 15 14 13 17 17 H 1.08005 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00209 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00205 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99796 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47184 * 89.99567 * 20 18 16 22 22 H 1.48497 * 109.47086 * 210.00120 * 20 18 16 23 23 H 1.48508 * 109.47016 * 329.99745 * 20 18 16 24 24 N 1.37415 * 126.38343 * 179.71105 * 11 10 8 25 25 H 0.97004 * 126.36358 * 0.02562 * 24 11 10 26 26 C 1.46924 * 118.73626 * 306.38027 * 7 6 5 27 27 H 1.09003 * 109.58585 * 173.39416 * 26 7 6 28 28 C 1.52992 * 109.70739 * 293.75336 * 26 7 6 29 29 C 1.53036 * 109.45735 * 149.97158 * 3 2 1 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 32 32 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.49495 * 298.56789 * 5 3 2 34 34 H 1.08994 * 109.50102 * 58.65949 * 5 3 2 35 35 H 1.08999 * 109.59931 * 294.86415 * 6 5 3 36 36 H 1.09006 * 109.58270 * 174.43535 * 6 5 3 37 37 H 1.07998 * 125.87319 * 359.95672 * 12 11 10 38 38 H 1.08003 * 125.53068 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.46990 * 204.97602 * 15 14 13 40 40 H 1.08996 * 109.46671 * 324.97412 * 15 14 13 41 41 H 0.96999 * 119.99934 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.47445 * 179.35992 * 28 26 7 43 43 H 1.09001 * 109.47233 * 299.36390 * 28 26 7 44 44 H 1.09003 * 109.47322 * 59.36059 * 28 26 7 45 45 H 1.09004 * 109.50125 * 301.33062 * 29 3 2 46 46 H 1.08994 * 109.50020 * 61.43666 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9993 0.5139 5 6 2.2170 1.7715 -1.4430 6 6 2.8077 3.1850 -1.4391 7 7 4.0304 3.1841 -0.6245 8 6 5.1919 3.6458 -1.1288 9 8 6.1988 3.6401 -0.4430 10 7 5.2391 4.1105 -2.3830 11 6 6.3845 4.5663 -2.8803 12 6 7.6257 4.6223 -2.2090 13 6 8.5390 5.1470 -3.0526 14 7 7.9323 5.4313 -4.2414 15 6 8.5819 6.0128 -5.4188 16 6 9.2241 4.9175 -6.2305 17 1 9.1549 3.8908 -5.9024 18 6 9.8990 5.2257 -7.3925 19 7 10.4599 4.2699 -8.1006 20 14 10.0181 7.0013 -7.9604 21 1 11.2349 7.6257 -7.3815 22 1 10.0978 7.0427 -9.4426 23 1 8.8162 7.7473 -7.5083 24 7 6.5828 5.0652 -4.1452 25 1 5.9127 5.1506 -4.8414 26 6 3.9628 2.6708 0.7505 27 1 4.9660 2.6294 1.1748 28 6 3.0834 3.5891 1.6013 29 6 3.3589 1.2631 0.7221 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9021 1.0921 -1.9501 34 1 1.2595 1.7789 -1.9637 35 1 2.0856 3.8818 -1.0136 36 1 3.0486 3.4830 -2.4596 37 1 7.8118 4.3009 -1.1949 38 1 9.5810 5.3155 -2.8237 39 1 7.8381 6.5273 -6.0271 40 1 9.3444 6.7231 -5.0993 41 1 10.9350 4.4869 -8.9179 42 1 3.0266 3.1987 2.6174 43 1 3.5147 4.5900 1.6202 44 1 2.0822 3.6330 1.1725 45 1 3.2142 0.9088 1.7427 46 1 4.0331 0.5886 0.1944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441676973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:09 Heat of formation + Delta-G solvation = 14.452537 kcal Electronic energy + Delta-G solvation = -27309.888778 eV Core-core repulsion = 23430.006555 eV Total energy + Delta-G solvation = -3879.882222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28278 -41.12652 -39.45687 -37.56681 -35.85898 -34.67062 -33.58849 -32.67530 -32.45434 -32.24715 -29.07826 -28.54589 -27.19377 -25.13413 -24.50269 -23.79984 -22.95780 -22.66202 -21.38794 -19.57402 -19.25692 -18.57520 -18.01612 -17.36205 -17.25888 -16.63583 -16.38727 -16.09853 -15.93812 -15.76265 -15.58366 -15.29141 -14.87383 -14.77776 -14.55963 -14.26312 -14.18750 -14.02547 -13.82922 -13.69117 -13.20423 -13.12593 -12.85704 -12.61380 -12.56966 -12.23981 -12.23544 -12.06266 -11.87737 -11.84214 -11.25969 -11.22727 -11.18273 -10.90938 -10.50763 -10.47654 -9.82170 -9.53381 -8.42137 -8.30300 -6.55685 0.28715 0.59946 1.39585 1.40898 1.49546 1.67558 2.14867 2.26389 2.78430 2.88271 2.98023 3.16518 3.66404 3.84145 3.91804 4.03066 4.12734 4.21179 4.23187 4.36157 4.40923 4.47613 4.49882 4.53697 4.59442 4.60900 4.64375 4.74988 4.84620 4.89392 4.90684 4.96829 5.03267 5.06042 5.14098 5.16062 5.18585 5.28610 5.42159 5.82876 5.94879 6.01576 6.13093 6.31000 6.40893 6.54305 6.83064 7.00208 7.10725 8.10183 8.74587 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024729 B = 0.002401 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.994975 B =11658.598143 C =12195.586516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.095 3.905 4 H 0.086 0.914 5 C -0.149 4.149 6 C 0.127 3.873 7 N -0.605 5.605 8 C 0.674 3.326 9 O -0.661 6.661 10 N -0.714 5.714 11 C 0.473 3.527 12 C -0.347 4.347 13 C 0.178 3.822 14 N -0.351 5.351 15 C 0.236 3.764 16 C -0.566 4.566 17 H 0.031 0.969 18 C 0.021 3.979 19 N -0.937 5.937 20 Si 0.951 3.049 21 H -0.256 1.256 22 H -0.288 1.288 23 H -0.232 1.232 24 N -0.466 5.466 25 H 0.453 0.547 26 C 0.150 3.850 27 H 0.077 0.923 28 C -0.151 4.151 29 C -0.118 4.118 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.171 0.829 38 H 0.225 0.775 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.273 0.727 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.369 2.325 14.401 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.038 3.962 4 H 0.104 0.896 5 C -0.188 4.188 6 C 0.004 3.996 7 N -0.340 5.340 8 C 0.375 3.625 9 O -0.546 6.546 10 N -0.478 5.478 11 C 0.219 3.781 12 C -0.379 4.379 13 C 0.035 3.965 14 N -0.137 5.137 15 C 0.117 3.883 16 C -0.604 4.604 17 H 0.050 0.950 18 C -0.179 4.179 19 N -0.575 5.575 20 Si 0.772 3.228 21 H -0.180 1.180 22 H -0.214 1.214 23 H -0.155 1.155 24 N -0.190 5.190 25 H 0.301 0.699 26 C 0.046 3.954 27 H 0.095 0.905 28 C -0.209 4.209 29 C -0.157 4.157 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.188 0.812 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.354 2.210 13.865 22.322 hybrid contribution 0.614 0.097 -0.855 1.058 sum -16.740 2.307 13.009 21.326 Atomic orbital electron populations 1.22981 0.79600 1.03673 1.00978 1.87902 1.21440 1.28417 1.95168 1.22122 0.94533 0.84632 0.94946 0.89603 1.22388 1.01770 0.96708 0.97917 1.21510 0.85350 0.95893 0.96878 1.47046 1.08071 1.65044 1.13877 1.16899 0.82799 0.78429 0.84379 1.90688 1.34924 1.64169 1.64784 1.68084 1.24273 1.38709 1.16756 1.18945 0.91461 0.84689 0.83021 1.22308 0.92494 1.18741 1.04376 1.23340 1.00073 0.90903 0.82160 1.47424 0.96528 1.55483 1.14243 1.20240 0.93834 0.93426 0.80770 1.21444 1.36233 0.94002 1.08713 0.95042 1.25859 0.93535 1.02905 0.95609 1.70041 1.35362 1.35684 1.16390 0.85686 0.81053 0.78121 0.77922 1.18041 1.21441 1.15461 1.44340 1.01049 1.60117 1.13525 0.69864 1.21040 1.00468 0.92554 0.81366 0.90458 1.22099 0.99753 0.98882 1.00204 1.21932 0.95723 0.95972 1.02052 0.92615 0.93303 0.88859 0.93531 0.89001 0.90500 0.89421 0.81210 0.75888 0.91489 0.88859 0.91796 0.89318 0.93563 0.91001 0.88462 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.41 -8.69 10.35 -148.98 -1.54 -10.23 16 3 C 0.10 1.90 2.37 30.62 0.07 1.97 16 4 H 0.09 1.32 6.15 -2.39 -0.01 1.31 16 5 C -0.15 -3.31 5.69 30.67 0.17 -3.14 16 6 C 0.13 3.19 6.02 86.36 0.52 3.71 16 7 N -0.61 -19.07 2.68 -813.51 -2.18 -21.25 16 8 C 0.67 27.17 8.22 179.35 1.47 28.64 16 9 O -0.66 -29.80 12.67 -4.79 -0.06 -29.86 16 10 N -0.71 -28.25 9.05 -322.55 -2.92 -31.17 16 11 C 0.47 18.30 8.07 133.95 1.08 19.38 16 12 C -0.35 -12.98 9.52 22.24 0.21 -12.77 16 13 C 0.18 5.72 11.45 83.22 0.95 6.67 16 14 N -0.35 -12.11 3.63 -350.84 -1.28 -13.39 16 15 C 0.24 8.41 5.26 85.63 0.45 8.86 16 16 C -0.57 -27.41 9.94 25.60 0.25 -27.16 16 17 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 18 C 0.02 1.07 5.47 84.65 0.46 1.53 16 19 N -0.94 -52.77 13.96 21.45 0.30 -52.47 16 20 Si 0.95 35.34 27.47 68.60 1.88 37.22 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 22 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.23 -7.33 6.54 99.48 0.65 -6.68 16 24 N -0.47 -16.00 7.38 -54.79 -0.40 -16.40 16 25 H 0.45 13.44 8.96 -213.28 -1.91 11.53 16 26 C 0.15 3.91 3.20 44.98 0.14 4.06 16 27 H 0.08 2.43 7.00 -2.39 -0.02 2.41 16 28 C -0.15 -2.88 9.03 71.98 0.65 -2.23 16 29 C -0.12 -2.70 5.20 30.67 0.16 -2.54 16 30 H 0.06 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.05 0.56 7.84 -2.39 -0.02 0.54 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.61 7.84 -2.39 -0.02 1.60 16 35 H 0.08 1.57 7.49 -2.39 -0.02 1.55 16 36 H 0.09 2.52 6.85 -2.38 -0.02 2.50 16 37 H 0.17 6.92 5.77 -2.91 -0.02 6.90 16 38 H 0.22 5.25 8.06 -2.91 -0.02 5.23 16 39 H 0.07 2.20 7.20 -2.39 -0.02 2.18 16 40 H 0.09 2.83 7.57 -2.39 -0.02 2.81 16 41 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.13 5.74 -2.39 -0.01 1.11 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -71.99 367.99 0.67 -71.32 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.97 Total: 37.72 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 7.83 Total: 28.51 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -6.48 Total: -134.68 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.60 Total: -40.09 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 1.88 Total: 37.22 kcal Total: -71.99 0.67 -71.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441676973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.775 kcal (2) G-P(sol) polarization free energy of solvation -71.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds