Wall clock time and date at job start Tue Mar 31 2020 14:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99623 * 2 1 4 4 H 1.09002 * 109.46490 * 329.97679 * 3 2 1 5 5 C 1.53048 * 109.45590 * 89.93246 * 3 2 1 6 6 C 1.52763 * 109.38340 * 181.25708 * 5 3 2 7 7 N 1.46928 * 109.00762 * 305.59085 * 6 5 3 8 8 C 1.34779 * 120.62693 * 233.57851 * 7 6 5 9 9 O 1.21840 * 119.99697 * 174.64048 * 8 7 6 10 10 N 1.33829 * 120.00335 * 354.64942 * 8 7 6 11 11 C 1.32933 * 120.00050 * 179.97438 * 10 8 7 12 12 C 1.41204 * 126.38166 * 359.97438 * 11 10 8 13 13 C 1.34951 * 108.24498 * 179.97438 * 12 11 10 14 14 N 1.36449 * 108.95186 * 359.97438 * 13 12 11 15 15 C 1.46499 * 125.85604 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47067 * 85.02789 * 15 14 13 17 17 H 1.07995 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00309 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99702 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47288 * 59.99535 * 20 18 16 22 22 H 1.48499 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46915 * 299.99610 * 20 18 16 24 24 N 1.37424 * 126.37658 * 179.97438 * 11 10 8 25 25 H 0.97001 * 126.36189 * 359.97438 * 24 11 10 26 26 C 1.46924 * 118.74030 * 53.30989 * 7 6 5 27 27 H 1.08996 * 109.59079 * 66.43069 * 26 7 6 28 28 C 1.53002 * 109.58754 * 186.85575 * 26 7 6 29 29 C 1.53034 * 109.46187 * 209.99663 * 3 2 1 30 30 H 1.08998 * 109.47470 * 60.00081 * 1 2 3 31 31 H 1.09000 * 109.46737 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47565 * 299.99717 * 1 2 3 33 33 H 1.08999 * 109.49775 * 301.33595 * 5 3 2 34 34 H 1.09003 * 109.49638 * 61.43432 * 5 3 2 35 35 H 1.08992 * 109.51035 * 185.70623 * 6 5 3 36 36 H 1.08998 * 109.42989 * 65.42132 * 6 5 3 37 37 H 1.07998 * 125.87520 * 0.03597 * 12 11 10 38 38 H 1.08003 * 125.52453 * 180.26527 * 13 12 11 39 39 H 1.09005 * 109.47208 * 205.03075 * 15 14 13 40 40 H 1.09001 * 109.46680 * 325.02948 * 15 14 13 41 41 H 0.96997 * 120.00218 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.46992 * 55.72944 * 28 26 7 43 43 H 1.09002 * 109.47113 * 175.72788 * 28 26 7 44 44 H 1.08994 * 109.46745 * 295.73143 * 28 26 7 45 45 H 1.08998 * 109.49731 * 58.66633 * 29 3 2 46 46 H 1.09005 * 109.52933 * 298.58927 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9992 -0.5142 5 6 2.2159 1.7719 1.4431 6 6 2.8081 3.1800 1.4412 7 7 4.0300 3.1842 0.6253 8 6 5.1914 3.6453 1.1303 9 8 6.2175 3.5539 0.4798 10 7 5.2176 4.2034 2.3464 11 6 6.3632 4.6577 2.8447 12 6 7.6250 4.6204 2.2122 13 6 8.5306 5.1787 3.0425 14 7 7.8990 5.5745 4.1854 15 6 8.5330 6.2241 5.3353 16 6 8.6082 7.7099 5.0944 17 1 8.2227 8.1283 4.1765 18 6 9.1702 8.5348 6.0456 19 7 9.6401 8.0251 7.1632 20 14 9.2628 10.3765 5.7474 21 1 7.8920 10.9183 5.5672 22 1 9.9067 11.0348 6.9124 23 1 10.0640 10.6403 4.5252 24 7 6.5399 5.2512 4.0716 25 1 5.8518 5.4168 4.7348 26 6 3.9631 2.6707 -0.7497 27 1 3.3355 3.3255 -1.3542 28 6 5.3715 2.6127 -1.3447 29 6 3.3591 1.2631 -0.7214 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.2580 1.7795 1.9631 34 1 2.9007 1.0926 1.9508 35 1 3.0497 3.4747 2.4624 36 1 2.0844 3.8772 1.0190 37 1 7.8299 4.2156 1.2321 38 1 9.5836 5.2977 2.8340 39 1 7.9443 6.0307 6.2321 40 1 9.5390 5.8262 5.4682 41 1 10.0351 8.6055 7.8325 42 1 6.0140 2.0133 -0.6996 43 1 5.3289 2.1611 -2.3358 44 1 5.7749 3.6222 -1.4224 45 1 3.2149 0.9085 -1.7419 46 1 4.0334 0.5884 -0.1938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441676975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:13 Heat of formation + Delta-G solvation = 43.440331 kcal Electronic energy + Delta-G solvation = -27355.348065 eV Core-core repulsion = 23476.722847 eV Total energy + Delta-G solvation = -3878.625217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.79780 -39.97421 -38.35668 -36.27654 -34.28128 -33.32037 -32.29355 -31.66398 -30.98014 -30.37523 -27.69559 -26.60029 -26.38339 -24.06737 -23.29057 -22.36314 -21.36592 -21.21759 -20.54531 -18.74759 -17.16154 -16.83040 -16.62946 -16.10656 -15.88553 -15.46754 -15.31419 -15.01143 -14.73444 -14.53210 -14.46529 -14.03689 -13.63225 -13.27749 -13.10947 -12.85577 -12.83658 -12.42369 -12.38025 -12.23241 -12.05189 -11.74120 -11.48186 -11.35757 -11.28383 -11.07639 -11.03496 -10.90283 -10.60767 -10.53300 -10.37590 -9.67907 -9.55277 -9.32755 -9.00087 -8.91235 -8.17649 -7.92950 -6.86532 -6.47359 -4.64963 1.80983 2.10514 3.07505 3.13117 3.14819 3.18681 3.38811 3.57875 4.06420 4.42936 4.64050 4.67346 4.75192 4.81917 4.96114 5.06306 5.11418 5.15865 5.27795 5.29334 5.36360 5.44958 5.50758 5.57366 5.65329 5.82510 5.86437 5.96648 6.01388 6.05438 6.08154 6.19552 6.25487 6.49675 6.54146 6.57518 6.72352 6.86738 7.03893 7.19121 7.31486 7.39888 7.52380 7.65760 7.85184 8.24913 8.44173 8.52278 9.05520 9.62797 10.53173 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026975 B = 0.002345 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.744441 B =11937.299536 C =12329.190335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.156 4.156 6 C 0.128 3.872 7 N -0.610 5.610 8 C 0.690 3.310 9 O -0.621 6.621 10 N -0.713 5.713 11 C 0.487 3.513 12 C -0.333 4.333 13 C 0.161 3.839 14 N -0.346 5.346 15 C 0.256 3.744 16 C -0.558 4.558 17 H 0.069 0.931 18 C 0.070 3.930 19 N -0.887 5.887 20 Si 0.910 3.090 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.472 5.472 25 H 0.443 0.557 26 C 0.163 3.837 27 H 0.061 0.939 28 C -0.127 4.127 29 C -0.126 4.126 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.272 0.728 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 -10.397 -10.123 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.033 3.967 4 H 0.077 0.923 5 C -0.194 4.194 6 C 0.004 3.996 7 N -0.347 5.347 8 C 0.391 3.609 9 O -0.504 6.504 10 N -0.478 5.478 11 C 0.233 3.767 12 C -0.366 4.366 13 C 0.016 3.984 14 N -0.132 5.132 15 C 0.139 3.861 16 C -0.596 4.596 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.736 3.264 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.195 5.195 25 H 0.290 0.710 26 C 0.058 3.942 27 H 0.079 0.921 28 C -0.184 4.184 29 C -0.165 4.165 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.200 0.800 38 H 0.203 0.797 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.079 -10.377 -9.559 18.574 hybrid contribution -0.136 1.292 0.079 1.301 sum -12.215 -9.086 -9.480 17.934 Atomic orbital electron populations 1.22754 0.81477 1.02462 0.99841 1.87923 1.19323 1.28263 1.95090 1.22167 0.94750 0.84077 0.95747 0.92292 1.22390 1.01547 0.98453 0.97040 1.21302 0.85944 0.94350 0.97955 1.46869 1.08615 1.66172 1.13004 1.16498 0.82111 0.78380 0.83903 1.90772 1.32648 1.63394 1.63538 1.68013 1.24194 1.37186 1.18371 1.18718 0.91084 0.84460 0.82404 1.22393 0.91515 1.17402 1.05307 1.22798 0.99268 0.91987 0.84369 1.47961 0.94482 1.52390 1.18408 1.20017 0.93337 0.92704 0.79997 1.21380 1.42478 0.90513 1.05227 0.91295 1.24956 0.94146 1.00008 0.94432 1.69886 1.38238 1.36675 1.07562 0.86347 0.78776 0.83156 0.78097 1.19876 1.20824 1.19679 1.44449 1.00288 1.57067 1.17700 0.70981 1.20982 0.98482 0.92299 0.82392 0.92124 1.22164 0.94178 1.04263 0.97819 1.22116 0.95320 0.98151 1.00904 0.94222 0.89891 0.94110 0.91211 0.90822 0.87777 0.93061 0.79953 0.79744 0.93168 0.91480 0.91804 0.90641 0.95116 0.90652 0.90634 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.42 10.35 -35.23 -0.36 -4.79 16 3 C 0.09 0.99 2.57 -26.69 -0.07 0.92 16 4 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 5 C -0.16 -1.78 5.68 -26.83 -0.15 -1.93 16 6 C 0.13 1.68 6.38 -3.93 -0.03 1.66 16 7 N -0.61 -9.55 2.98 -171.40 -0.51 -10.06 16 8 C 0.69 13.16 8.12 -87.76 -0.71 12.45 16 9 O -0.62 -12.57 8.65 5.06 0.04 -12.53 16 10 N -0.71 -13.71 9.07 -15.79 -0.14 -13.85 16 11 C 0.49 9.28 8.07 -155.29 -1.25 8.02 16 12 C -0.33 -6.12 9.52 -39.62 -0.38 -6.50 16 13 C 0.16 2.70 11.45 -16.66 -0.19 2.51 16 14 N -0.35 -6.39 3.63 -62.24 -0.23 -6.62 16 15 C 0.26 5.31 6.19 -5.19 -0.03 5.28 16 16 C -0.56 -13.23 9.39 -34.44 -0.32 -13.55 16 17 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -22.50 13.29 55.43 0.74 -21.76 16 20 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 N -0.47 -8.35 7.38 31.33 0.23 -8.12 16 25 H 0.44 6.93 8.96 -182.55 -1.64 5.29 16 26 C 0.16 2.18 3.50 -67.60 -0.24 1.95 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 C -0.13 -1.84 7.59 37.16 0.28 -1.55 16 29 C -0.13 -1.49 5.02 -26.61 -0.13 -1.62 16 30 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.29 7.84 -51.93 -0.41 -0.12 16 33 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.50 6.89 -51.93 -0.36 1.14 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.18 3.50 5.77 -52.49 -0.30 3.20 16 38 H 0.19 2.47 8.06 -52.48 -0.42 2.05 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 42 H 0.07 1.26 6.73 -51.93 -0.35 0.91 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 1.25 6.76 -51.93 -0.35 0.90 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -28.43 370.09 -10.31 -38.74 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -8.41 Total: 8.60 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -2.23 Total: 10.57 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.09 Total: -60.41 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.32 Total: -17.32 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.43 -10.31 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441676975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.184 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds