Wall clock time and date at job start Tue Mar 31 2020 14:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99623 * 2 1 4 4 H 1.09002 * 109.46490 * 329.97679 * 3 2 1 5 5 C 1.53048 * 109.45590 * 89.93246 * 3 2 1 6 6 C 1.52763 * 109.38340 * 181.25708 * 5 3 2 7 7 N 1.46928 * 109.00762 * 305.59085 * 6 5 3 8 8 C 1.34779 * 120.62693 * 233.57851 * 7 6 5 9 9 O 1.21840 * 119.99697 * 174.64048 * 8 7 6 10 10 N 1.33829 * 120.00335 * 354.64942 * 8 7 6 11 11 C 1.32933 * 120.00050 * 179.97438 * 10 8 7 12 12 C 1.41204 * 126.38166 * 359.97438 * 11 10 8 13 13 C 1.34951 * 108.24498 * 179.97438 * 12 11 10 14 14 N 1.36449 * 108.95186 * 359.97438 * 13 12 11 15 15 C 1.46499 * 125.85604 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47067 * 85.02789 * 15 14 13 17 17 H 1.07995 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00309 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99702 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47288 * 59.99535 * 20 18 16 22 22 H 1.48499 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46915 * 299.99610 * 20 18 16 24 24 N 1.37424 * 126.37658 * 179.97438 * 11 10 8 25 25 H 0.97001 * 126.36189 * 359.97438 * 24 11 10 26 26 C 1.46924 * 118.74030 * 53.30989 * 7 6 5 27 27 H 1.08996 * 109.59079 * 66.43069 * 26 7 6 28 28 C 1.53002 * 109.58754 * 186.85575 * 26 7 6 29 29 C 1.53034 * 109.46187 * 209.99663 * 3 2 1 30 30 H 1.08998 * 109.47470 * 60.00081 * 1 2 3 31 31 H 1.09000 * 109.46737 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47565 * 299.99717 * 1 2 3 33 33 H 1.08999 * 109.49775 * 301.33595 * 5 3 2 34 34 H 1.09003 * 109.49638 * 61.43432 * 5 3 2 35 35 H 1.08992 * 109.51035 * 185.70623 * 6 5 3 36 36 H 1.08998 * 109.42989 * 65.42132 * 6 5 3 37 37 H 1.07998 * 125.87520 * 0.03597 * 12 11 10 38 38 H 1.08003 * 125.52453 * 180.26527 * 13 12 11 39 39 H 1.09005 * 109.47208 * 205.03075 * 15 14 13 40 40 H 1.09001 * 109.46680 * 325.02948 * 15 14 13 41 41 H 0.96997 * 120.00218 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.46992 * 55.72944 * 28 26 7 43 43 H 1.09002 * 109.47113 * 175.72788 * 28 26 7 44 44 H 1.08994 * 109.46745 * 295.73143 * 28 26 7 45 45 H 1.08998 * 109.49731 * 58.66633 * 29 3 2 46 46 H 1.09005 * 109.52933 * 298.58927 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9992 -0.5142 5 6 2.2159 1.7719 1.4431 6 6 2.8081 3.1800 1.4412 7 7 4.0300 3.1842 0.6253 8 6 5.1914 3.6453 1.1303 9 8 6.2175 3.5539 0.4798 10 7 5.2176 4.2034 2.3464 11 6 6.3632 4.6577 2.8447 12 6 7.6250 4.6204 2.2122 13 6 8.5306 5.1787 3.0425 14 7 7.8990 5.5745 4.1854 15 6 8.5330 6.2241 5.3353 16 6 8.6082 7.7099 5.0944 17 1 8.2227 8.1283 4.1765 18 6 9.1702 8.5348 6.0456 19 7 9.6401 8.0251 7.1632 20 14 9.2628 10.3765 5.7474 21 1 7.8920 10.9183 5.5672 22 1 9.9067 11.0348 6.9124 23 1 10.0640 10.6403 4.5252 24 7 6.5399 5.2512 4.0716 25 1 5.8518 5.4168 4.7348 26 6 3.9631 2.6707 -0.7497 27 1 3.3355 3.3255 -1.3542 28 6 5.3715 2.6127 -1.3447 29 6 3.3591 1.2631 -0.7214 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.2580 1.7795 1.9631 34 1 2.9007 1.0926 1.9508 35 1 3.0497 3.4747 2.4624 36 1 2.0844 3.8772 1.0190 37 1 7.8299 4.2156 1.2321 38 1 9.5836 5.2977 2.8340 39 1 7.9443 6.0307 6.2321 40 1 9.5390 5.8262 5.4682 41 1 10.0351 8.6055 7.8325 42 1 6.0140 2.0133 -0.6996 43 1 5.3289 2.1611 -2.3358 44 1 5.7749 3.6222 -1.4224 45 1 3.2149 0.9085 -1.7419 46 1 4.0334 0.5884 -0.1938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441676975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:12 Heat of formation + Delta-G solvation = 26.834278 kcal Electronic energy + Delta-G solvation = -27356.068157 eV Core-core repulsion = 23476.722847 eV Total energy + Delta-G solvation = -3879.345310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23616 -41.16655 -39.39894 -37.39175 -35.89237 -34.84193 -33.59597 -32.75123 -32.39060 -31.89088 -28.78622 -28.14335 -27.17895 -25.32867 -24.69672 -23.69510 -22.66958 -22.46192 -21.69402 -20.04510 -18.86757 -18.36761 -17.51036 -17.40066 -17.12397 -16.64623 -16.57952 -16.16497 -15.96135 -15.83435 -15.78440 -15.41485 -14.69855 -14.46935 -14.38179 -14.32694 -14.15359 -13.74347 -13.66911 -13.34654 -13.25100 -13.07018 -12.90111 -12.70563 -12.57678 -12.29127 -12.16101 -12.08951 -11.97580 -11.89972 -11.51438 -11.15607 -10.83007 -10.75257 -10.44947 -10.41797 -9.41468 -9.37259 -8.51026 -8.15110 -6.54465 0.36980 0.65369 1.40217 1.42651 1.49798 1.73541 2.18528 2.32220 2.78113 2.93754 3.01921 3.22752 3.72496 3.83789 3.96558 4.02556 4.12268 4.24617 4.32912 4.43293 4.45933 4.49284 4.53247 4.59352 4.60757 4.69087 4.86473 4.88288 4.90474 4.91777 4.96920 5.00087 5.05623 5.09263 5.19441 5.32610 5.38228 5.52864 5.60070 5.72690 5.89002 6.03347 6.20288 6.30156 6.36600 6.60231 6.88151 7.10384 7.19267 8.18623 8.67587 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026975 B = 0.002345 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.744441 B =11937.299536 C =12329.190335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.094 3.906 4 H 0.080 0.920 5 C -0.147 4.147 6 C 0.127 3.873 7 N -0.611 5.611 8 C 0.674 3.326 9 O -0.641 6.641 10 N -0.720 5.720 11 C 0.473 3.527 12 C -0.344 4.344 13 C 0.174 3.826 14 N -0.353 5.353 15 C 0.269 3.731 16 C -0.565 4.565 17 H 0.059 0.941 18 C 0.029 3.971 19 N -0.913 5.913 20 Si 0.963 3.037 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.268 1.268 24 N -0.469 5.469 25 H 0.450 0.550 26 C 0.159 3.841 27 H 0.082 0.918 28 C -0.117 4.117 29 C -0.119 4.119 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.174 0.826 38 H 0.220 0.780 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.274 0.726 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.525 -10.297 -11.154 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.036 3.964 4 H 0.098 0.902 5 C -0.185 4.185 6 C 0.004 3.996 7 N -0.347 5.347 8 C 0.374 3.626 9 O -0.526 6.526 10 N -0.485 5.485 11 C 0.219 3.781 12 C -0.377 4.377 13 C 0.030 3.970 14 N -0.139 5.139 15 C 0.152 3.848 16 C -0.603 4.603 17 H 0.077 0.923 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.788 3.212 21 H -0.201 1.201 22 H -0.205 1.205 23 H -0.193 1.193 24 N -0.193 5.193 25 H 0.298 0.702 26 C 0.055 3.945 27 H 0.100 0.900 28 C -0.174 4.174 29 C -0.157 4.157 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.191 0.809 38 H 0.236 0.764 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.518 -10.299 -10.607 20.033 hybrid contribution 0.236 1.192 0.350 1.265 sum -13.281 -9.107 -10.257 19.093 Atomic orbital electron populations 1.22973 0.79637 1.03687 1.00908 1.87897 1.21386 1.28291 1.95174 1.22100 0.94574 0.84616 0.95089 0.90212 1.22297 1.01784 0.96636 0.97817 1.21402 0.85326 0.95946 0.96912 1.47039 1.08361 1.65280 1.14041 1.16848 0.83011 0.78786 0.83910 1.90767 1.33666 1.64211 1.63907 1.68066 1.24356 1.37382 1.18666 1.18932 0.91518 0.84782 0.82885 1.22309 0.91815 1.18276 1.05312 1.23301 1.00498 0.90207 0.83005 1.47797 0.94891 1.52707 1.18460 1.19687 0.93377 0.91448 0.80280 1.21585 1.41930 0.92083 1.04702 0.92264 1.25607 0.94023 1.03386 0.94322 1.69954 1.39135 1.37802 1.08217 0.85512 0.78472 0.79167 0.78022 1.20093 1.20505 1.19326 1.44410 1.00233 1.57021 1.17590 0.70152 1.21171 0.98186 0.93707 0.81399 0.89999 1.21949 0.94354 1.02306 0.98776 1.22014 0.95427 0.96368 1.01940 0.92837 0.88743 0.93295 0.89055 0.93182 0.89447 0.91002 0.80869 0.76371 0.93999 0.91287 0.91731 0.93496 0.92347 0.93141 0.88699 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.41 -8.43 10.35 -148.98 -1.54 -9.97 16 3 C 0.09 1.85 2.57 30.62 0.08 1.93 16 4 H 0.08 1.27 7.79 -2.39 -0.02 1.25 16 5 C -0.15 -3.15 5.68 30.53 0.17 -2.98 16 6 C 0.13 3.20 6.38 86.22 0.55 3.75 16 7 N -0.61 -18.97 2.98 -814.35 -2.43 -21.39 16 8 C 0.67 26.20 8.12 179.35 1.46 27.65 16 9 O -0.64 -26.81 8.65 -4.80 -0.04 -26.85 16 10 N -0.72 -28.16 9.07 -322.55 -2.93 -31.09 16 11 C 0.47 18.22 8.07 133.95 1.08 19.30 16 12 C -0.34 -12.74 9.52 22.24 0.21 -12.52 16 13 C 0.17 5.70 11.45 83.22 0.95 6.66 16 14 N -0.35 -12.84 3.63 -350.84 -1.28 -14.11 16 15 C 0.27 11.07 6.19 85.63 0.53 11.60 16 16 C -0.56 -26.46 9.39 25.60 0.24 -26.22 16 17 H 0.06 2.86 7.81 -2.91 -0.02 2.83 16 18 C 0.03 1.39 5.46 84.65 0.46 1.85 16 19 N -0.91 -45.96 13.29 21.45 0.28 -45.68 16 20 Si 0.96 38.88 29.54 68.60 2.03 40.90 16 21 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 24 N -0.47 -16.59 7.38 -54.79 -0.40 -17.00 16 25 H 0.45 14.15 8.96 -213.28 -1.91 12.24 16 26 C 0.16 4.08 3.50 44.98 0.16 4.23 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 C -0.12 -3.36 7.59 71.98 0.55 -2.82 16 29 C -0.12 -2.63 5.02 30.67 0.15 -2.48 16 30 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.56 7.84 -2.39 -0.02 0.54 16 33 H 0.09 1.56 7.84 -2.39 -0.02 1.54 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 2.51 6.89 -2.39 -0.02 2.49 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.17 6.82 5.77 -2.91 -0.02 6.81 16 38 H 0.22 5.43 8.06 -2.91 -0.02 5.41 16 39 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 42 H 0.05 1.61 6.73 -2.38 -0.02 1.59 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.69 6.76 -2.39 -0.02 1.68 16 45 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -61.15 370.09 0.60 -60.56 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.92 Total: 33.12 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 7.82 Total: 31.50 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -6.75 Total: -129.26 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.58 Total: -36.82 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.90 kcal Total: -61.15 0.60 -60.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441676975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.390 kcal (2) G-P(sol) polarization free energy of solvation -61.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds