Wall clock time and date at job start Tue Mar 31 2020 14:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99960 * 2 1 4 4 H 1.09003 * 109.46253 * 30.02046 * 3 2 1 5 5 C 1.53041 * 109.46032 * 270.06771 * 3 2 1 6 6 C 1.53624 * 109.24360 * 178.49026 * 5 3 2 7 7 N 1.46931 * 108.54170 * 54.85524 * 6 5 3 8 8 C 1.34777 * 120.62952 * 126.37306 * 7 6 5 9 9 O 1.21840 * 120.00016 * 174.03076 * 8 7 6 10 10 N 1.33829 * 120.00144 * 354.02697 * 8 7 6 11 11 C 1.32932 * 120.00002 * 180.02562 * 10 8 7 12 12 C 1.41206 * 126.38038 * 0.02562 * 11 10 8 13 13 C 1.34957 * 108.24430 * 180.02562 * 12 11 10 14 14 N 1.36460 * 108.94897 * 0.02562 * 13 12 11 15 15 C 1.46498 * 125.85124 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47346 * 275.00264 * 15 14 13 17 17 H 1.07997 * 120.00018 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99892 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99756 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99891 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47040 * 90.00003 * 20 18 16 22 22 H 1.48499 * 109.46522 * 209.99692 * 20 18 16 23 23 H 1.48495 * 109.46922 * 329.99583 * 20 18 16 24 24 N 1.37423 * 126.37449 * 180.02562 * 11 10 8 25 25 H 0.96998 * 126.37374 * 0.02562 * 24 11 10 26 26 C 1.46927 * 118.73919 * 306.09078 * 7 6 5 27 27 H 1.09000 * 109.58909 * 293.93679 * 26 7 6 28 28 C 1.52999 * 109.58793 * 173.64916 * 26 7 6 29 29 C 1.53035 * 109.46320 * 149.99890 * 3 2 1 30 30 H 1.08995 * 109.47500 * 300.00384 * 1 2 3 31 31 H 1.09001 * 109.46794 * 60.00365 * 1 2 3 32 32 H 1.08997 * 109.46807 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.49748 * 298.56555 * 5 3 2 34 34 H 1.09000 * 109.50045 * 58.62909 * 5 3 2 35 35 H 1.09000 * 109.74024 * 295.11626 * 6 5 3 36 36 H 1.09002 * 109.66665 * 174.54402 * 6 5 3 37 37 H 1.08000 * 125.87792 * 359.74400 * 12 11 10 38 38 H 1.07998 * 125.52383 * 179.97438 * 13 12 11 39 39 H 1.09007 * 109.47000 * 35.00606 * 15 14 13 40 40 H 1.09000 * 109.47088 * 154.99809 * 15 14 13 41 41 H 0.97001 * 119.99746 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.46918 * 67.45734 * 28 26 7 43 43 H 1.09000 * 109.47123 * 187.46176 * 28 26 7 44 44 H 1.08998 * 109.47184 * 307.46089 * 28 26 7 45 45 H 1.09004 * 109.50117 * 61.42878 * 29 3 2 46 46 H 1.09006 * 109.49471 * 301.33884 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9992 0.5142 5 6 2.2160 1.7719 -1.4430 6 6 2.8058 3.1904 -1.4373 7 7 4.0301 3.1842 -0.6250 8 6 5.1913 3.6461 -1.1297 9 8 6.1732 3.7372 -0.4141 10 7 5.2660 4.0046 -2.4169 11 6 6.4114 4.4597 -2.9148 12 6 7.6257 4.6190 -2.2118 13 6 8.5487 5.1057 -3.0677 14 7 7.9740 5.2661 -4.2950 15 6 8.6428 5.7723 -5.4960 16 6 8.6031 7.2788 -5.4960 17 1 8.1269 7.8064 -4.6829 18 6 9.1748 7.9835 -6.5342 19 7 9.1396 9.2981 -6.5344 20 14 9.9979 7.0708 -7.9409 21 1 8.9990 6.7974 -9.0053 22 1 11.0964 7.9024 -8.4948 23 1 10.5524 5.7872 -7.4409 24 7 6.6344 4.8627 -4.2096 25 1 5.9851 4.8683 -4.9302 26 6 3.9631 2.6706 0.7499 27 1 3.3375 3.3268 1.3550 28 6 5.3715 2.6126 1.3450 29 6 3.3592 1.2630 0.7215 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9008 1.0926 -1.9508 34 1 1.2582 1.7790 -1.9632 35 1 2.0857 3.8868 -1.0075 36 1 3.0453 3.4922 -2.4569 37 1 7.7867 4.3947 -1.1677 38 1 9.5754 5.3324 -2.8211 39 1 9.6797 5.4362 -5.5035 40 1 8.1324 5.3954 -6.3823 41 1 9.5421 9.7939 -7.2645 42 1 5.7528 3.6252 1.4753 43 1 5.3371 2.1099 2.3116 44 1 6.0279 2.0610 0.6719 45 1 4.0332 0.5885 0.1934 46 1 3.2148 0.9084 1.7421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441676977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:15 Heat of formation + Delta-G solvation = 48.914099 kcal Electronic energy + Delta-G solvation = -27392.377907 eV Core-core repulsion = 23513.990050 eV Total energy + Delta-G solvation = -3878.387857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.87094 -39.98950 -38.37911 -36.30242 -34.31198 -33.27093 -32.34429 -31.66365 -31.05680 -30.70767 -27.76254 -26.93091 -26.39974 -24.07297 -23.09994 -22.25065 -21.39728 -21.27577 -20.55481 -18.75994 -17.42365 -17.07106 -16.64564 -16.15522 -15.95348 -15.48700 -15.34364 -15.04889 -14.74270 -14.64141 -14.36871 -13.98421 -13.59585 -13.37291 -13.23117 -12.98158 -12.84835 -12.65649 -12.45698 -12.30240 -12.23368 -11.83207 -11.50705 -11.43902 -11.28878 -11.08257 -11.02735 -10.93272 -10.72098 -10.61542 -10.05491 -9.69852 -9.64179 -9.37880 -9.06880 -9.04503 -8.21603 -7.99373 -6.84730 -6.51996 -4.60342 1.72681 2.00443 2.95609 3.00370 3.06879 3.11810 3.35855 3.56481 3.96940 4.31697 4.59826 4.64721 4.75911 4.76400 4.95293 5.04295 5.10761 5.14929 5.20941 5.26353 5.33736 5.42571 5.48609 5.56228 5.61408 5.75556 5.81121 5.90197 5.94135 6.03031 6.04131 6.07732 6.16943 6.19958 6.33469 6.46823 6.65709 6.80809 6.93621 7.02981 7.15770 7.24838 7.55553 7.71831 7.99613 8.21874 8.46674 8.52181 9.00506 9.58203 10.59560 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.002406 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.112338 B =11635.513244 C =12193.530131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.154 4.154 6 C 0.127 3.873 7 N -0.610 5.610 8 C 0.690 3.310 9 O -0.620 6.620 10 N -0.710 5.710 11 C 0.490 3.510 12 C -0.329 4.329 13 C 0.164 3.836 14 N -0.347 5.347 15 C 0.230 3.770 16 C -0.564 4.564 17 H 0.085 0.915 18 C 0.083 3.917 19 N -0.876 5.876 20 Si 0.875 3.125 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.263 1.263 24 N -0.472 5.472 25 H 0.444 0.556 26 C 0.163 3.837 27 H 0.062 0.938 28 C -0.129 4.129 29 C -0.126 4.126 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.272 0.728 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.907 -14.153 8.976 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.032 3.968 4 H 0.077 0.923 5 C -0.193 4.193 6 C 0.003 3.997 7 N -0.347 5.347 8 C 0.392 3.608 9 O -0.502 6.502 10 N -0.474 5.474 11 C 0.236 3.764 12 C -0.362 4.362 13 C 0.020 3.980 14 N -0.133 5.133 15 C 0.112 3.888 16 C -0.602 4.602 17 H 0.103 0.897 18 C -0.124 4.124 19 N -0.512 5.512 20 Si 0.700 3.300 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.188 1.188 24 N -0.195 5.195 25 H 0.291 0.709 26 C 0.059 3.941 27 H 0.080 0.920 28 C -0.186 4.186 29 C -0.165 4.165 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.202 0.798 38 H 0.204 0.796 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.879 -14.071 8.485 19.706 hybrid contribution 0.191 0.078 -0.936 0.958 sum -10.688 -13.992 7.549 19.158 Atomic orbital electron populations 1.22755 0.81461 1.02462 0.99854 1.87921 1.19336 1.28266 1.95094 1.22168 0.94721 0.84084 0.95798 0.92286 1.22518 1.01529 0.98326 0.96933 1.21513 0.85753 0.94387 0.98034 1.46895 1.08377 1.66299 1.13085 1.16484 0.81898 0.77775 0.84669 1.90765 1.36213 1.60694 1.62568 1.68011 1.23556 1.40258 1.15612 1.18705 0.90803 0.84780 0.82113 1.22427 0.92455 1.18041 1.03287 1.22799 0.99573 0.92874 0.82753 1.47413 0.97397 1.56543 1.11914 1.20308 0.92463 0.96474 0.79560 1.21263 1.40667 0.87879 1.10370 0.89670 1.24836 0.95005 0.94849 0.97676 1.69859 1.42880 1.05863 1.32577 0.86890 0.80095 0.80205 0.82778 1.19612 1.20239 1.18784 1.44378 1.02611 1.61349 1.11163 0.70915 1.20970 0.98495 0.92281 0.82400 0.92014 1.22140 0.94144 1.04183 0.98132 1.22115 0.95355 0.98079 1.00911 0.94203 0.94109 0.89894 0.90741 0.91316 0.92964 0.87640 0.79792 0.79589 0.91842 0.93891 0.91729 0.90087 0.94896 0.91308 0.90728 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.38 10.35 -35.23 -0.36 -4.74 16 3 C 0.09 0.97 2.57 -26.69 -0.07 0.91 16 4 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 5 C -0.15 -1.74 5.71 -26.39 -0.15 -1.89 16 6 C 0.13 1.64 6.47 -3.48 -0.02 1.62 16 7 N -0.61 -9.43 2.97 -170.87 -0.51 -9.94 16 8 C 0.69 13.01 8.01 -87.76 -0.70 12.31 16 9 O -0.62 -12.42 8.83 5.06 0.04 -12.37 16 10 N -0.71 -13.45 9.05 -15.79 -0.14 -13.59 16 11 C 0.49 9.16 8.07 -155.29 -1.25 7.91 16 12 C -0.33 -5.93 9.52 -39.62 -0.38 -6.31 16 13 C 0.16 2.68 11.45 -16.66 -0.19 2.49 16 14 N -0.35 -6.18 3.63 -62.24 -0.23 -6.40 16 15 C 0.23 4.39 5.26 -5.20 -0.03 4.36 16 16 C -0.56 -13.61 9.94 -34.44 -0.34 -13.95 16 17 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 18 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.88 -23.92 13.96 55.43 0.77 -23.14 16 20 Si 0.87 17.86 27.47 -169.99 -4.67 13.19 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 23 H -0.26 -4.94 6.54 56.52 0.37 -4.57 16 24 N -0.47 -8.11 7.38 31.33 0.23 -7.88 16 25 H 0.44 6.65 8.96 -182.55 -1.64 5.02 16 26 C 0.16 2.15 3.49 -67.60 -0.24 1.92 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 C -0.13 -1.83 7.61 37.16 0.28 -1.55 16 29 C -0.13 -1.46 5.02 -26.61 -0.13 -1.60 16 30 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.04 0.29 7.84 -51.93 -0.41 -0.12 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.11 1.50 6.84 -51.93 -0.36 1.15 16 37 H 0.19 3.47 5.77 -52.49 -0.30 3.17 16 38 H 0.19 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.06 1.13 7.20 -51.93 -0.37 0.76 16 40 H 0.04 0.78 7.57 -51.93 -0.39 0.38 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.08 1.32 6.66 -51.93 -0.35 0.97 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 1.13 6.83 -51.93 -0.35 0.77 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -30.04 366.59 -9.93 -39.97 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.37 Total: 9.86 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -2.23 Total: 9.51 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.13 Total: -60.95 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.32 Total: -17.11 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -4.67 Total: 13.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.04 -9.93 -39.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441676977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.886 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds