Wall clock time and date at job start Tue Mar 31 2020 14:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99960 * 2 1 4 4 H 1.09003 * 109.46253 * 30.02046 * 3 2 1 5 5 C 1.53041 * 109.46032 * 270.06771 * 3 2 1 6 6 C 1.53624 * 109.24360 * 178.49026 * 5 3 2 7 7 N 1.46931 * 108.54170 * 54.85524 * 6 5 3 8 8 C 1.34777 * 120.62952 * 126.37306 * 7 6 5 9 9 O 1.21840 * 120.00016 * 174.03076 * 8 7 6 10 10 N 1.33829 * 120.00144 * 354.02697 * 8 7 6 11 11 C 1.32932 * 120.00002 * 180.02562 * 10 8 7 12 12 C 1.41206 * 126.38038 * 0.02562 * 11 10 8 13 13 C 1.34957 * 108.24430 * 180.02562 * 12 11 10 14 14 N 1.36460 * 108.94897 * 0.02562 * 13 12 11 15 15 C 1.46498 * 125.85124 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47346 * 275.00264 * 15 14 13 17 17 H 1.07997 * 120.00018 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99892 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99756 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99891 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47040 * 90.00003 * 20 18 16 22 22 H 1.48499 * 109.46522 * 209.99692 * 20 18 16 23 23 H 1.48495 * 109.46922 * 329.99583 * 20 18 16 24 24 N 1.37423 * 126.37449 * 180.02562 * 11 10 8 25 25 H 0.96998 * 126.37374 * 0.02562 * 24 11 10 26 26 C 1.46927 * 118.73919 * 306.09078 * 7 6 5 27 27 H 1.09000 * 109.58909 * 293.93679 * 26 7 6 28 28 C 1.52999 * 109.58793 * 173.64916 * 26 7 6 29 29 C 1.53035 * 109.46320 * 149.99890 * 3 2 1 30 30 H 1.08995 * 109.47500 * 300.00384 * 1 2 3 31 31 H 1.09001 * 109.46794 * 60.00365 * 1 2 3 32 32 H 1.08997 * 109.46807 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.49748 * 298.56555 * 5 3 2 34 34 H 1.09000 * 109.50045 * 58.62909 * 5 3 2 35 35 H 1.09000 * 109.74024 * 295.11626 * 6 5 3 36 36 H 1.09002 * 109.66665 * 174.54402 * 6 5 3 37 37 H 1.08000 * 125.87792 * 359.74400 * 12 11 10 38 38 H 1.07998 * 125.52383 * 179.97438 * 13 12 11 39 39 H 1.09007 * 109.47000 * 35.00606 * 15 14 13 40 40 H 1.09000 * 109.47088 * 154.99809 * 15 14 13 41 41 H 0.97001 * 119.99746 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.46918 * 67.45734 * 28 26 7 43 43 H 1.09000 * 109.47123 * 187.46176 * 28 26 7 44 44 H 1.08998 * 109.47184 * 307.46089 * 28 26 7 45 45 H 1.09004 * 109.50117 * 61.42878 * 29 3 2 46 46 H 1.09006 * 109.49471 * 301.33884 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9992 0.5142 5 6 2.2160 1.7719 -1.4430 6 6 2.8058 3.1904 -1.4373 7 7 4.0301 3.1842 -0.6250 8 6 5.1913 3.6461 -1.1297 9 8 6.1732 3.7372 -0.4141 10 7 5.2660 4.0046 -2.4169 11 6 6.4114 4.4597 -2.9148 12 6 7.6257 4.6190 -2.2118 13 6 8.5487 5.1057 -3.0677 14 7 7.9740 5.2661 -4.2950 15 6 8.6428 5.7723 -5.4960 16 6 8.6031 7.2788 -5.4960 17 1 8.1269 7.8064 -4.6829 18 6 9.1748 7.9835 -6.5342 19 7 9.1396 9.2981 -6.5344 20 14 9.9979 7.0708 -7.9409 21 1 8.9990 6.7974 -9.0053 22 1 11.0964 7.9024 -8.4948 23 1 10.5524 5.7872 -7.4409 24 7 6.6344 4.8627 -4.2096 25 1 5.9851 4.8683 -4.9302 26 6 3.9631 2.6706 0.7499 27 1 3.3375 3.3268 1.3550 28 6 5.3715 2.6126 1.3450 29 6 3.3592 1.2630 0.7215 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9008 1.0926 -1.9508 34 1 1.2582 1.7790 -1.9632 35 1 2.0857 3.8868 -1.0075 36 1 3.0453 3.4922 -2.4569 37 1 7.7867 4.3947 -1.1677 38 1 9.5754 5.3324 -2.8211 39 1 9.6797 5.4362 -5.5035 40 1 8.1324 5.3954 -6.3823 41 1 9.5421 9.7939 -7.2645 42 1 5.7528 3.6252 1.4753 43 1 5.3371 2.1099 2.3116 44 1 6.0279 2.0610 0.6719 45 1 4.0332 0.5885 0.1934 46 1 3.2148 0.9084 1.7421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441676977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:15 Heat of formation + Delta-G solvation = 29.349310 kcal Electronic energy + Delta-G solvation = -27393.226300 eV Core-core repulsion = 23513.990050 eV Total energy + Delta-G solvation = -3879.236250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.26305 -41.16429 -39.40289 -37.39961 -35.86308 -34.81523 -33.66964 -32.74438 -32.42094 -32.17779 -28.96321 -28.30709 -27.18041 -25.23236 -24.49310 -23.63199 -22.68466 -22.47543 -21.68120 -20.02799 -19.25202 -18.47710 -17.53728 -17.40714 -17.16931 -16.67557 -16.49011 -16.17480 -16.01726 -15.85794 -15.71514 -15.27984 -14.74406 -14.59304 -14.45469 -14.39301 -14.26313 -13.85521 -13.75503 -13.37067 -13.30365 -13.13216 -12.88068 -12.59192 -12.51841 -12.25997 -12.15563 -12.00478 -11.92407 -11.82617 -11.53189 -11.19526 -10.92030 -10.84346 -10.46470 -10.42483 -9.46663 -9.38587 -8.41781 -8.27017 -6.55112 0.32122 0.62762 1.39337 1.40383 1.49418 1.71373 2.17743 2.26331 2.77511 2.89916 2.98430 3.21050 3.71655 3.84918 3.93717 4.02479 4.11515 4.22248 4.29430 4.37322 4.43166 4.48682 4.49377 4.56888 4.59438 4.60313 4.67842 4.85023 4.88205 4.90942 4.91742 4.98341 5.04193 5.08433 5.16607 5.19526 5.30570 5.37885 5.57393 5.84473 5.98711 6.03939 6.15954 6.29931 6.42767 6.55093 6.85754 7.08132 7.11261 8.16623 8.74626 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.002406 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.112338 B =11635.513244 C =12193.530131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.093 3.907 4 H 0.079 0.921 5 C -0.145 4.145 6 C 0.125 3.875 7 N -0.611 5.611 8 C 0.674 3.326 9 O -0.641 6.641 10 N -0.718 5.718 11 C 0.474 3.526 12 C -0.344 4.344 13 C 0.176 3.824 14 N -0.352 5.352 15 C 0.236 3.764 16 C -0.564 4.564 17 H 0.032 0.968 18 C 0.022 3.978 19 N -0.936 5.936 20 Si 0.949 3.051 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.225 1.225 24 N -0.469 5.469 25 H 0.452 0.548 26 C 0.159 3.841 27 H 0.081 0.919 28 C -0.118 4.118 29 C -0.118 4.118 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.174 0.826 38 H 0.223 0.777 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.273 0.727 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.040 0.960 45 H 0.053 0.947 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 -16.218 8.708 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.036 3.964 4 H 0.097 0.903 5 C -0.184 4.184 6 C 0.002 3.998 7 N -0.347 5.347 8 C 0.375 3.625 9 O -0.525 6.525 10 N -0.483 5.483 11 C 0.220 3.780 12 C -0.377 4.377 13 C 0.033 3.967 14 N -0.138 5.138 15 C 0.117 3.883 16 C -0.602 4.602 17 H 0.051 0.949 18 C -0.179 4.179 19 N -0.574 5.574 20 Si 0.771 3.229 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.148 1.148 24 N -0.193 5.193 25 H 0.300 0.700 26 C 0.055 3.945 27 H 0.099 0.901 28 C -0.175 4.175 29 C -0.157 4.157 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.191 0.809 38 H 0.239 0.761 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.537 -16.180 8.241 21.513 hybrid contribution 0.284 0.753 -0.739 1.093 sum -11.253 -15.427 7.502 20.516 Atomic orbital electron populations 1.22972 0.79649 1.03686 1.00892 1.87894 1.21368 1.28275 1.95177 1.22102 0.94563 0.84606 0.95154 0.90305 1.22416 1.01745 0.96493 0.97697 1.21613 0.85131 0.95990 0.97019 1.47066 1.08121 1.65423 1.14128 1.16841 0.82787 0.78215 0.84681 1.90758 1.37236 1.61637 1.62888 1.68063 1.23772 1.40562 1.15885 1.18933 0.91181 0.85163 0.82756 1.22337 0.92947 1.19244 1.03153 1.23332 1.00724 0.90985 0.81652 1.47393 0.97611 1.56674 1.12171 1.20226 0.94385 0.92936 0.80706 1.21437 1.39461 0.90740 1.08610 0.94935 1.25847 0.95714 0.95469 1.00869 1.70038 1.45049 1.08280 1.34041 0.85708 0.78610 0.80001 0.78588 1.19102 1.21128 1.14796 1.44372 1.02749 1.61179 1.10991 0.69987 1.21156 0.98205 0.93686 0.81421 0.90075 1.21933 0.94279 1.02424 0.98907 1.22010 0.95442 0.96268 1.01952 0.92862 0.93318 0.88724 0.93006 0.89227 0.91012 0.89292 0.80883 0.76076 0.88873 0.91766 0.91811 0.92555 0.92141 0.94138 0.92860 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.41 -8.33 10.35 -148.98 -1.54 -9.87 16 3 C 0.09 1.82 2.57 30.62 0.08 1.90 16 4 H 0.08 1.25 7.79 -2.39 -0.02 1.23 16 5 C -0.14 -3.08 5.71 30.82 0.18 -2.90 16 6 C 0.13 3.15 6.47 86.51 0.56 3.71 16 7 N -0.61 -18.89 2.97 -812.66 -2.41 -21.30 16 8 C 0.67 26.07 8.01 179.35 1.44 27.50 16 9 O -0.64 -26.69 8.83 -4.80 -0.04 -26.73 16 10 N -0.72 -27.84 9.05 -322.56 -2.92 -30.76 16 11 C 0.47 17.97 8.07 133.95 1.08 19.05 16 12 C -0.34 -12.53 9.52 22.24 0.21 -12.32 16 13 C 0.18 5.57 11.45 83.22 0.95 6.52 16 14 N -0.35 -12.10 3.63 -350.84 -1.28 -13.38 16 15 C 0.24 8.42 5.26 85.63 0.45 8.87 16 16 C -0.56 -27.23 9.94 25.60 0.25 -26.97 16 17 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 18 C 0.02 1.07 5.47 84.66 0.46 1.53 16 19 N -0.94 -52.51 13.96 21.45 0.30 -52.21 16 20 Si 0.95 35.37 27.47 68.60 1.88 37.26 16 21 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 22 H -0.29 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.23 -7.00 6.54 99.48 0.65 -6.35 16 24 N -0.47 -15.95 7.38 -54.79 -0.40 -16.35 16 25 H 0.45 13.37 8.96 -213.28 -1.91 11.46 16 26 C 0.16 4.05 3.49 44.98 0.16 4.21 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 C -0.12 -3.38 7.61 71.98 0.55 -2.83 16 29 C -0.12 -2.58 5.02 30.67 0.15 -2.42 16 30 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.05 0.55 7.84 -2.39 -0.02 0.53 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.52 7.84 -2.39 -0.02 1.51 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 2.54 6.84 -2.39 -0.02 2.52 16 37 H 0.17 6.76 5.77 -2.91 -0.02 6.74 16 38 H 0.22 5.17 8.06 -2.91 -0.02 5.15 16 39 H 0.09 2.89 7.20 -2.38 -0.02 2.87 16 40 H 0.06 2.09 7.57 -2.39 -0.02 2.07 16 41 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.06 1.88 6.66 -2.39 -0.02 1.86 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.04 1.37 6.83 -2.39 -0.02 1.35 16 45 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -68.82 366.59 0.36 -68.46 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.98 Total: 37.50 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 7.75 Total: 27.39 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -6.71 Total: -133.99 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.58 Total: -36.60 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 1.88 Total: 37.26 kcal Total: -68.82 0.36 -68.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441676977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.805 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds