Wall clock time and date at job start Tue Mar 31 2020 14:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.68031 * 2 1 4 4 C 1.53297 * 109.68039 * 120.55464 * 2 1 3 5 5 O 1.42963 * 109.22213 * 67.42534 * 4 2 1 6 6 C 1.42955 * 114.16797 * 62.57976 * 5 4 2 7 7 C 1.53003 * 109.51067 * 177.49968 * 6 5 4 8 8 C 1.52995 * 109.51390 * 57.34404 * 6 5 4 9 9 C 1.53298 * 109.22369 * 297.41803 * 6 5 4 10 10 N 1.47148 * 109.68571 * 239.48255 * 2 1 3 11 11 C 1.34782 * 120.98531 * 110.78903 * 10 2 1 12 12 O 1.21838 * 119.99441 * 0.02562 * 11 10 2 13 13 N 1.33831 * 119.99892 * 180.02562 * 11 10 2 14 14 C 1.32934 * 119.99828 * 179.97438 * 13 11 10 15 15 C 1.41211 * 126.37500 * 0.03008 * 14 13 11 16 16 C 1.34960 * 108.24128 * 179.97438 * 15 14 13 17 17 N 1.36451 * 108.94938 * 359.97438 * 16 15 14 18 18 C 1.46504 * 125.85250 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.46970 * 84.98001 * 18 17 16 20 20 H 1.07999 * 120.00183 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99655 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00355 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99898 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47109 * 89.99386 * 23 21 19 25 25 H 1.48495 * 109.47263 * 210.00077 * 23 21 19 26 26 H 1.48503 * 109.46985 * 329.99877 * 23 21 19 27 27 N 1.37417 * 126.37946 * 179.71595 * 14 13 11 28 28 H 0.96993 * 126.36804 * 359.97438 * 27 14 13 29 29 H 1.09002 * 109.47005 * 180.51191 * 1 2 3 30 30 H 1.08992 * 109.47429 * 300.52163 * 1 2 3 31 31 H 1.09007 * 109.46719 * 60.51748 * 1 2 3 32 32 H 1.09004 * 109.51370 * 187.34832 * 4 2 1 33 33 H 1.08999 * 109.51408 * 307.44666 * 4 2 1 34 34 H 1.09001 * 109.46829 * 179.75237 * 7 6 5 35 35 H 1.09008 * 109.46820 * 299.74405 * 7 6 5 36 36 H 1.08996 * 109.47573 * 59.74681 * 7 6 5 37 37 H 1.09000 * 109.47052 * 300.25260 * 8 6 5 38 38 H 1.09004 * 109.47240 * 60.25229 * 8 6 5 39 39 H 1.09005 * 109.47377 * 180.24898 * 8 6 5 40 40 H 1.09001 * 109.68481 * 292.58208 * 9 6 5 41 41 H 1.08998 * 109.68011 * 172.02233 * 9 6 5 42 42 H 1.07996 * 125.88459 * 0.03644 * 15 14 13 43 43 H 1.08000 * 125.52756 * 180.02562 * 16 15 14 44 44 H 1.08999 * 109.47036 * 204.97571 * 18 17 16 45 45 H 1.08995 * 109.47308 * 324.97581 * 18 17 16 46 46 H 0.96994 * 120.00206 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0463 -0.7338 1.2430 5 8 1.7168 -2.1212 1.1413 6 6 2.3260 -2.7877 0.0330 7 6 1.9540 -4.2715 0.0616 8 6 3.8463 -2.6391 0.1201 9 6 1.8241 -2.1591 -1.2720 10 7 2.0257 -0.7035 -1.1936 11 6 2.6456 -0.0345 -2.1859 12 8 2.8029 1.1707 -2.1023 13 7 3.0882 -0.6942 -3.2630 14 6 3.6991 -0.0343 -4.2420 15 6 3.9520 1.3543 -4.2853 16 6 4.5907 1.6315 -5.4414 17 7 4.7588 0.4736 -6.1434 18 6 5.4080 0.3493 -7.4509 19 6 6.8979 0.2232 -7.2620 20 1 7.3190 0.2349 -6.2676 21 6 7.7232 0.0940 -8.3588 22 7 7.2105 0.0803 -9.5697 23 14 9.5700 -0.0616 -8.1248 24 1 9.9333 -1.4954 -7.9934 25 1 10.2686 0.5206 -9.2987 26 1 9.9763 0.6665 -6.8959 27 7 4.2075 -0.5772 -5.3974 28 1 4.1876 -1.5134 -5.6503 29 1 -0.3633 -1.0276 0.0092 30 1 -0.3634 0.5219 0.8852 31 1 -0.3633 0.5058 -0.8947 32 1 3.1283 -0.6204 1.3095 33 1 1.5807 -0.3126 2.1340 34 1 2.4152 -4.7781 -0.7861 35 1 2.3112 -4.7178 0.9898 36 1 0.8707 -4.3757 0.0017 37 1 4.1096 -1.5816 0.1019 38 1 4.2025 -3.0863 1.0482 39 1 4.3099 -3.1437 -0.7276 40 1 0.7637 -2.3765 -1.4001 41 1 2.3865 -2.5627 -2.1139 42 1 3.6818 2.0710 -3.5239 43 1 4.9167 2.6109 -5.7591 44 1 5.0303 -0.5365 -7.9614 45 1 5.1913 1.2339 -8.0497 46 1 7.7911 -0.0110 -10.3413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486958787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:33 Heat of formation + Delta-G solvation = 33.530033 kcal Electronic energy + Delta-G solvation = -27902.480092 eV Core-core repulsion = 24023.425131 eV Total energy + Delta-G solvation = -3879.054960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.83148 -40.28402 -38.21071 -34.96058 -34.08070 -34.01012 -32.90644 -31.07316 -30.96552 -30.03073 -27.78196 -26.76299 -26.23506 -25.79749 -23.49294 -22.48542 -21.35119 -21.06259 -19.73675 -18.34824 -17.28782 -16.90377 -16.65142 -16.28661 -15.77835 -15.32334 -15.09419 -14.99456 -14.65991 -14.34205 -14.30759 -14.02389 -13.55938 -13.11809 -12.97880 -12.75751 -12.57412 -12.52927 -12.35192 -12.25972 -12.00543 -11.95087 -11.86762 -11.44578 -11.37115 -11.35074 -11.07867 -11.00835 -10.54965 -10.42525 -10.26791 -9.85052 -9.67565 -9.58143 -9.04072 -8.93285 -8.32461 -8.13829 -6.89423 -6.49397 -4.66726 1.77575 2.07128 3.04593 3.12277 3.13588 3.17561 3.29528 3.72133 4.05084 4.39994 4.57206 4.70915 4.80328 4.88399 4.90430 4.94821 5.16317 5.26440 5.34171 5.49568 5.53348 5.56891 5.61239 5.63871 5.70456 5.78242 5.83467 5.86440 5.92524 5.99100 6.05239 6.07571 6.18240 6.29033 6.29985 6.52096 6.55513 6.73160 7.07674 7.21461 7.28471 7.38207 7.50509 7.62245 7.82143 8.21261 8.41507 8.45899 9.04003 9.57400 10.51537 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.002747 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.445685 B =10191.224464 C =10829.749407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.118 3.882 3 H 0.103 0.897 4 C 0.052 3.948 5 O -0.374 6.374 6 C 0.096 3.904 7 C -0.134 4.134 8 C -0.170 4.170 9 C 0.105 3.895 10 N -0.607 5.607 11 C 0.692 3.308 12 O -0.631 6.631 13 N -0.710 5.710 14 C 0.486 3.514 15 C -0.334 4.334 16 C 0.162 3.838 17 N -0.346 5.346 18 C 0.255 3.745 19 C -0.558 4.558 20 H 0.069 0.931 21 C 0.070 3.930 22 N -0.887 5.887 23 Si 0.909 3.091 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.270 1.270 27 N -0.471 5.471 28 H 0.444 0.556 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.182 0.818 43 H 0.186 0.814 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.045 -3.650 13.830 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.013 3.987 3 H 0.121 0.879 4 C -0.026 4.026 5 O -0.293 6.293 6 C 0.056 3.944 7 C -0.192 4.192 8 C -0.228 4.228 9 C -0.019 4.019 10 N -0.343 5.343 11 C 0.393 3.607 12 O -0.513 6.513 13 N -0.474 5.474 14 C 0.233 3.767 15 C -0.367 4.367 16 C 0.017 3.983 17 N -0.132 5.132 18 C 0.139 3.861 19 C -0.596 4.596 20 H 0.088 0.912 21 C -0.135 4.135 22 N -0.524 5.524 23 Si 0.736 3.264 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.194 1.194 27 N -0.194 5.194 28 H 0.291 0.709 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.199 0.801 43 H 0.203 0.797 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.044 -4.089 13.473 16.734 hybrid contribution 1.302 0.206 -0.331 1.359 sum -7.742 -3.882 13.143 15.740 Atomic orbital electron populations 1.22008 0.95108 1.02279 1.01744 1.21603 0.94407 0.98007 0.84657 0.87865 1.22984 1.00039 0.81991 0.97559 1.87924 1.71536 1.21598 1.48262 1.21941 0.92604 0.93025 0.86880 1.21699 1.02286 0.92555 1.02640 1.22299 0.95363 1.02909 1.02204 1.22116 1.00797 0.80947 0.97998 1.46842 1.61273 1.07038 1.19173 1.16497 0.78134 0.83618 0.82493 1.90718 1.63238 1.15583 1.81756 1.68007 1.35890 1.37693 1.05840 1.18719 0.85204 0.88909 0.83870 1.22380 1.15533 0.96612 1.02139 1.22800 0.93518 0.90542 0.91456 1.47983 1.49557 0.98337 1.17275 1.20032 0.92472 1.00591 0.73002 1.21421 0.90137 1.53874 0.94187 0.91237 1.24953 1.00062 0.93868 0.94622 1.69892 1.36565 1.47763 0.98135 0.86298 0.83218 0.78717 0.78208 1.20209 1.20677 1.19425 1.44425 1.54006 1.05344 1.15603 0.70933 0.92133 0.91989 0.92524 0.92565 0.88295 0.90829 0.91825 0.91833 0.91972 0.92378 0.91311 0.92354 0.87490 0.80074 0.79685 0.93134 0.91433 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.24 37.16 0.34 -1.47 16 2 C 0.12 1.62 3.23 -67.42 -0.22 1.40 16 3 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 4 C 0.05 0.61 5.97 37.31 0.22 0.83 16 5 O -0.37 -4.71 9.85 -35.23 -0.35 -5.06 16 6 C 0.10 1.15 1.11 -90.47 -0.10 1.04 16 7 C -0.13 -1.27 8.85 37.16 0.33 -0.94 16 8 C -0.17 -2.09 8.10 37.16 0.30 -1.79 16 9 C 0.11 1.45 4.91 -3.53 -0.02 1.43 16 10 N -0.61 -9.69 2.23 -170.66 -0.38 -10.07 16 11 C 0.69 13.53 8.23 -87.76 -0.72 12.81 16 12 O -0.63 -13.66 12.73 5.07 0.06 -13.60 16 13 N -0.71 -13.70 9.10 -15.79 -0.14 -13.85 16 14 C 0.49 9.32 8.07 -155.29 -1.25 8.06 16 15 C -0.33 -6.22 9.52 -39.62 -0.38 -6.60 16 16 C 0.16 2.73 11.45 -16.66 -0.19 2.54 16 17 N -0.35 -6.35 3.63 -62.24 -0.23 -6.58 16 18 C 0.26 5.28 6.19 -5.19 -0.03 5.25 16 19 C -0.56 -13.19 9.39 -34.44 -0.32 -13.51 16 20 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 21 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -22.43 13.29 55.43 0.74 -21.69 16 23 Si 0.91 19.17 29.54 -169.99 -5.02 14.15 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 N -0.47 -8.28 7.38 31.33 0.23 -8.05 16 28 H 0.44 6.86 8.96 -182.55 -1.64 5.22 16 29 H 0.06 0.72 7.23 -51.93 -0.38 0.35 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.69 6.25 -51.93 -0.32 0.37 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.89 6.11 -51.93 -0.32 0.57 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 41 H 0.11 1.57 6.92 -51.93 -0.36 1.21 16 42 H 0.18 3.59 5.77 -52.49 -0.30 3.28 16 43 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -28.96 370.38 -9.92 -38.88 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -8.28 Total: 9.64 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -2.14 Total: 10.65 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.22 Total: -60.25 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.28 Total: -18.65 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.96 -9.92 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486958787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.408 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds