Wall clock time and date at job start Tue Mar 31 2020 14:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.68031 * 2 1 4 4 C 1.53297 * 109.68039 * 120.55464 * 2 1 3 5 5 O 1.42963 * 109.22213 * 67.42534 * 4 2 1 6 6 C 1.42955 * 114.16797 * 62.57976 * 5 4 2 7 7 C 1.53003 * 109.51067 * 177.49968 * 6 5 4 8 8 C 1.52995 * 109.51390 * 57.34404 * 6 5 4 9 9 C 1.53298 * 109.22369 * 297.41803 * 6 5 4 10 10 N 1.47148 * 109.68571 * 239.48255 * 2 1 3 11 11 C 1.34782 * 120.98531 * 110.78903 * 10 2 1 12 12 O 1.21838 * 119.99441 * 0.02562 * 11 10 2 13 13 N 1.33831 * 119.99892 * 180.02562 * 11 10 2 14 14 C 1.32934 * 119.99828 * 179.97438 * 13 11 10 15 15 C 1.41211 * 126.37500 * 0.03008 * 14 13 11 16 16 C 1.34960 * 108.24128 * 179.97438 * 15 14 13 17 17 N 1.36451 * 108.94938 * 359.97438 * 16 15 14 18 18 C 1.46504 * 125.85250 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.46970 * 84.98001 * 18 17 16 20 20 H 1.07999 * 120.00183 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99655 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00355 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99898 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47109 * 89.99386 * 23 21 19 25 25 H 1.48495 * 109.47263 * 210.00077 * 23 21 19 26 26 H 1.48503 * 109.46985 * 329.99877 * 23 21 19 27 27 N 1.37417 * 126.37946 * 179.71595 * 14 13 11 28 28 H 0.96993 * 126.36804 * 359.97438 * 27 14 13 29 29 H 1.09002 * 109.47005 * 180.51191 * 1 2 3 30 30 H 1.08992 * 109.47429 * 300.52163 * 1 2 3 31 31 H 1.09007 * 109.46719 * 60.51748 * 1 2 3 32 32 H 1.09004 * 109.51370 * 187.34832 * 4 2 1 33 33 H 1.08999 * 109.51408 * 307.44666 * 4 2 1 34 34 H 1.09001 * 109.46829 * 179.75237 * 7 6 5 35 35 H 1.09008 * 109.46820 * 299.74405 * 7 6 5 36 36 H 1.08996 * 109.47573 * 59.74681 * 7 6 5 37 37 H 1.09000 * 109.47052 * 300.25260 * 8 6 5 38 38 H 1.09004 * 109.47240 * 60.25229 * 8 6 5 39 39 H 1.09005 * 109.47377 * 180.24898 * 8 6 5 40 40 H 1.09001 * 109.68481 * 292.58208 * 9 6 5 41 41 H 1.08998 * 109.68011 * 172.02233 * 9 6 5 42 42 H 1.07996 * 125.88459 * 0.03644 * 15 14 13 43 43 H 1.08000 * 125.52756 * 180.02562 * 16 15 14 44 44 H 1.08999 * 109.47036 * 204.97571 * 18 17 16 45 45 H 1.08995 * 109.47308 * 324.97581 * 18 17 16 46 46 H 0.96994 * 120.00206 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0463 -0.7338 1.2430 5 8 1.7168 -2.1212 1.1413 6 6 2.3260 -2.7877 0.0330 7 6 1.9540 -4.2715 0.0616 8 6 3.8463 -2.6391 0.1201 9 6 1.8241 -2.1591 -1.2720 10 7 2.0257 -0.7035 -1.1936 11 6 2.6456 -0.0345 -2.1859 12 8 2.8029 1.1707 -2.1023 13 7 3.0882 -0.6942 -3.2630 14 6 3.6991 -0.0343 -4.2420 15 6 3.9520 1.3543 -4.2853 16 6 4.5907 1.6315 -5.4414 17 7 4.7588 0.4736 -6.1434 18 6 5.4080 0.3493 -7.4509 19 6 6.8979 0.2232 -7.2620 20 1 7.3190 0.2349 -6.2676 21 6 7.7232 0.0940 -8.3588 22 7 7.2105 0.0803 -9.5697 23 14 9.5700 -0.0616 -8.1248 24 1 9.9333 -1.4954 -7.9934 25 1 10.2686 0.5206 -9.2987 26 1 9.9763 0.6665 -6.8959 27 7 4.2075 -0.5772 -5.3974 28 1 4.1876 -1.5134 -5.6503 29 1 -0.3633 -1.0276 0.0092 30 1 -0.3634 0.5219 0.8852 31 1 -0.3633 0.5058 -0.8947 32 1 3.1283 -0.6204 1.3095 33 1 1.5807 -0.3126 2.1340 34 1 2.4152 -4.7781 -0.7861 35 1 2.3112 -4.7178 0.9898 36 1 0.8707 -4.3757 0.0017 37 1 4.1096 -1.5816 0.1019 38 1 4.2025 -3.0863 1.0482 39 1 4.3099 -3.1437 -0.7276 40 1 0.7637 -2.3765 -1.4001 41 1 2.3865 -2.5627 -2.1139 42 1 3.6818 2.0710 -3.5239 43 1 4.9167 2.6109 -5.7591 44 1 5.0303 -0.5365 -7.9614 45 1 5.1913 1.2339 -8.0497 46 1 7.7911 -0.0110 -10.3413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000486958787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:32 Heat of formation + Delta-G solvation = 16.801933 kcal Electronic energy + Delta-G solvation = -27903.205476 eV Core-core repulsion = 24023.425131 eV Total energy + Delta-G solvation = -3879.780345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27858 -41.43869 -39.55698 -36.24890 -35.64623 -35.08054 -34.49304 -32.50259 -32.41271 -31.29803 -28.72497 -28.39563 -27.22289 -26.89507 -25.07727 -23.85265 -22.73223 -22.33601 -21.02013 -19.48456 -18.91773 -18.50185 -17.88427 -17.60365 -17.01328 -16.65651 -16.55961 -16.12742 -16.00360 -15.75457 -15.60080 -15.29595 -14.78606 -14.48191 -14.38319 -14.19797 -13.94487 -13.66099 -13.56615 -13.26661 -13.14811 -13.04316 -12.89859 -12.84965 -12.74725 -12.43997 -12.37557 -12.31484 -12.07270 -12.00356 -11.35278 -11.21354 -11.14415 -10.88619 -10.77361 -10.50072 -9.84753 -9.39322 -8.52989 -8.18646 -6.55645 0.31799 0.61093 1.37971 1.42380 1.50871 1.67770 2.05538 2.31177 2.77876 2.91635 2.98585 3.12019 3.69890 3.84540 3.92980 3.93770 3.99085 4.14582 4.24271 4.32373 4.45604 4.50532 4.58302 4.60145 4.71838 4.73987 4.80655 4.84504 4.87038 4.90012 4.92238 4.98485 5.00136 5.06120 5.20475 5.27488 5.29297 5.36920 5.52005 5.71321 5.82357 5.89123 6.15241 6.24092 6.33094 6.57753 6.82583 6.98956 7.18311 8.08808 8.66711 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.002747 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.445685 B =10191.224464 C =10829.749407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.111 3.889 3 H 0.085 0.915 4 C 0.057 3.943 5 O -0.375 6.375 6 C 0.097 3.903 7 C -0.130 4.130 8 C -0.165 4.165 9 C 0.104 3.896 10 N -0.606 5.606 11 C 0.678 3.322 12 O -0.660 6.660 13 N -0.713 5.713 14 C 0.472 3.528 15 C -0.347 4.347 16 C 0.177 3.823 17 N -0.350 5.350 18 C 0.269 3.731 19 C -0.565 4.565 20 H 0.059 0.941 21 C 0.030 3.970 22 N -0.913 5.913 23 Si 0.963 3.037 24 H -0.276 1.276 25 H -0.278 1.278 26 H -0.270 1.270 27 N -0.465 5.465 28 H 0.452 0.548 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.170 0.830 43 H 0.221 0.779 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 -4.354 14.882 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.007 3.993 3 H 0.103 0.897 4 C -0.020 4.020 5 O -0.294 6.294 6 C 0.057 3.943 7 C -0.187 4.187 8 C -0.223 4.223 9 C -0.019 4.019 10 N -0.341 5.341 11 C 0.378 3.622 12 O -0.545 6.545 13 N -0.478 5.478 14 C 0.218 3.782 15 C -0.380 4.380 16 C 0.033 3.967 17 N -0.136 5.136 18 C 0.152 3.848 19 C -0.603 4.603 20 H 0.077 0.923 21 C -0.172 4.172 22 N -0.551 5.551 23 Si 0.788 3.212 24 H -0.202 1.202 25 H -0.203 1.203 26 H -0.195 1.195 27 N -0.189 5.189 28 H 0.300 0.700 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.147 0.853 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.188 0.812 43 H 0.238 0.762 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.178 -4.825 14.554 17.870 hybrid contribution 1.300 0.434 -0.620 1.504 sum -7.878 -4.390 13.935 16.599 Atomic orbital electron populations 1.21931 0.93449 1.02530 1.02209 1.21818 0.95660 0.97222 0.84634 0.89736 1.23028 0.99825 0.81648 0.97548 1.87933 1.71564 1.21760 1.48182 1.22004 0.92186 0.94381 0.85717 1.21701 1.02893 0.90481 1.03644 1.22252 0.95811 1.01304 1.02886 1.22235 1.01134 0.79641 0.98891 1.46971 1.60200 1.08056 1.18862 1.16833 0.78572 0.83557 0.83215 1.90688 1.64591 1.16784 1.82478 1.68066 1.36077 1.37715 1.05970 1.18928 0.85517 0.89494 0.84221 1.22273 1.16631 0.96351 1.02719 1.23303 0.91849 0.91302 0.90287 1.47837 1.49729 0.98968 1.17060 1.19717 0.91108 1.00280 0.73735 1.21617 0.91717 1.53382 0.93629 0.92271 1.25589 1.03400 0.93739 0.94473 1.69955 1.37718 1.48779 0.98667 0.85467 0.79289 0.78452 0.78008 1.20196 1.20290 1.19491 1.44377 1.53779 1.05631 1.15123 0.69995 0.91899 0.89272 0.94269 0.93383 0.85267 0.89815 0.90846 0.91153 0.94426 0.90916 0.91504 0.91605 0.88626 0.81246 0.76223 0.93856 0.91171 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.24 71.98 0.67 -2.55 16 2 C 0.11 2.99 3.23 44.97 0.15 3.14 16 3 H 0.08 2.60 7.08 -2.39 -0.02 2.58 16 4 C 0.06 1.26 5.97 72.08 0.43 1.69 16 5 O -0.38 -8.68 9.85 -148.98 -1.47 -10.14 16 6 C 0.10 2.19 1.11 -10.69 -0.01 2.18 16 7 C -0.13 -2.16 8.85 71.98 0.64 -1.52 16 8 C -0.17 -3.92 8.10 71.98 0.58 -3.34 16 9 C 0.10 2.81 4.91 86.35 0.42 3.23 16 10 N -0.61 -19.48 2.23 -811.99 -1.81 -21.30 16 11 C 0.68 27.17 8.23 179.35 1.48 28.64 16 12 O -0.66 -29.57 12.73 -4.79 -0.06 -29.64 16 13 N -0.71 -28.05 9.10 -322.55 -2.94 -30.98 16 14 C 0.47 18.25 8.07 133.95 1.08 19.33 16 15 C -0.35 -13.01 9.52 22.25 0.21 -12.80 16 16 C 0.18 5.80 11.45 83.22 0.95 6.75 16 17 N -0.35 -12.62 3.63 -350.83 -1.28 -13.90 16 18 C 0.27 10.92 6.19 85.63 0.53 11.45 16 19 C -0.57 -26.28 9.39 25.60 0.24 -26.04 16 20 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 21 C 0.03 1.45 5.46 84.65 0.46 1.91 16 22 N -0.91 -45.64 13.29 21.45 0.28 -45.36 16 23 Si 0.96 38.65 29.54 68.60 2.03 40.67 16 24 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 N -0.47 -16.29 7.38 -54.79 -0.40 -16.70 16 28 H 0.45 13.90 8.96 -213.29 -1.91 11.99 16 29 H 0.06 1.39 7.23 -2.39 -0.02 1.37 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.05 1.15 6.25 -2.39 -0.01 1.14 16 33 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 1.07 6.11 -2.39 -0.01 1.06 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.07 1.67 7.67 -2.39 -0.02 1.65 16 41 H 0.10 2.79 6.92 -2.39 -0.02 2.78 16 42 H 0.17 6.88 5.77 -2.91 -0.02 6.86 16 43 H 0.22 5.43 8.06 -2.91 -0.02 5.41 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 Total: -1.00 -61.67 370.38 1.26 -60.41 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.92 Total: 34.88 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 7.83 Total: 32.05 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -6.14 Total: -128.23 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.53 Total: -39.78 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.67 kcal Total: -61.67 1.26 -60.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486958787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.207 kcal (2) G-P(sol) polarization free energy of solvation -61.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds