Wall clock time and date at job start Tue Mar 31 2020 13:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46787 * 2 1 4 4 N 1.46494 * 109.47269 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00310 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00085 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00153 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.46815 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46850 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99978 * 180.02562 * 9 8 7 12 12 C 1.39471 * 119.99891 * 179.97438 * 11 9 8 13 13 C 1.36110 * 126.21626 * 0.14378 * 12 11 9 14 14 C 1.39762 * 107.82869 * 180.26709 * 13 12 11 15 15 C 1.50694 * 125.84077 * 179.72419 * 14 13 12 16 16 N 1.30855 * 108.31847 * 359.75600 * 14 13 12 17 17 N 1.35266 * 126.21450 * 180.02562 * 12 11 9 18 18 C 1.46491 * 126.04623 * 359.97438 * 17 12 11 19 19 C 1.50702 * 109.46957 * 269.71277 * 18 17 12 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 H 1.08997 * 109.47549 * 299.99643 * 1 2 3 28 28 H 1.09004 * 109.47459 * 60.00564 * 1 2 3 29 29 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47049 * 240.00213 * 2 1 3 31 31 H 1.08994 * 109.47513 * 119.99273 * 2 1 3 32 32 H 1.08996 * 109.47144 * 59.99488 * 3 2 1 33 33 H 1.09004 * 109.46660 * 299.99925 * 3 2 1 34 34 H 0.97004 * 119.99888 * 359.97438 * 4 3 2 35 35 H 1.09005 * 109.46661 * 60.00486 * 7 5 4 36 36 H 1.08990 * 109.47176 * 300.00501 * 7 5 4 37 37 H 1.08994 * 109.47657 * 60.00165 * 8 7 5 38 38 H 1.09002 * 109.47185 * 299.99651 * 8 7 5 39 39 H 0.97004 * 120.00013 * 359.97438 * 11 9 8 40 40 H 1.07999 * 126.09101 * 0.05355 * 13 12 11 41 41 H 1.09003 * 109.47188 * 270.01578 * 15 14 13 42 42 H 1.08998 * 109.47119 * 30.01737 * 15 14 13 43 43 H 1.09003 * 109.47108 * 150.01312 * 15 14 13 44 44 H 1.09004 * 109.47166 * 149.71543 * 18 17 12 45 45 H 1.08994 * 109.47507 * 29.71250 * 18 17 12 46 46 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5048 1.4427 -0.0006 5 6 4.1787 2.6099 -0.0012 6 8 3.5723 3.6602 -0.0008 7 6 5.6857 2.6100 -0.0013 8 6 6.1956 4.0525 -0.0014 9 6 7.7026 4.0526 -0.0021 10 8 8.3092 3.0022 -0.0020 11 7 8.3765 5.2199 -0.0018 12 6 9.7712 5.2199 -0.0019 13 6 10.5754 4.1219 -0.0050 14 6 11.9016 4.5628 0.0023 15 6 13.1243 3.6819 0.0078 16 7 11.9000 5.8713 0.0043 17 7 10.5703 6.3113 -0.0011 18 6 10.1239 7.7066 -0.0006 19 6 9.9780 8.1878 -1.4212 20 1 10.1956 7.5209 -2.2424 21 6 9.5607 9.4777 -1.6728 22 7 9.4281 9.8960 -2.9125 23 14 9.1837 10.6310 -0.2525 24 1 10.4157 11.3681 0.1270 25 1 8.1354 11.5985 -0.6654 26 1 8.7002 9.8434 0.9098 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9563 -0.8900 34 1 3.9899 0.6026 -0.0006 35 1 6.0490 2.0957 -0.8911 36 1 6.0491 2.0966 0.8888 37 1 5.8323 4.5664 0.8885 38 1 5.8322 4.5662 -0.8915 39 1 7.8914 6.0599 -0.0015 40 1 10.2472 3.0929 -0.0087 41 1 13.4136 3.4683 1.0368 42 1 12.9017 2.7481 -0.5084 43 1 13.9421 4.1922 -0.5011 44 1 10.8582 8.3228 0.5182 45 1 9.1630 7.7804 0.5085 46 1 9.1349 10.8035 -3.0894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518395769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:00 Heat of formation + Delta-G solvation = -12.797991 kcal Electronic energy + Delta-G solvation = -26325.125804 eV Core-core repulsion = 22444.061910 eV Total energy + Delta-G solvation = -3881.063894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.95594 -40.06892 -39.11366 -36.19424 -34.80289 -33.75216 -33.28701 -32.70236 -32.14739 -29.55195 -28.56307 -27.14890 -26.31330 -24.98201 -22.53836 -22.09604 -21.38520 -20.36830 -19.71415 -19.28693 -17.55731 -17.19315 -16.78967 -16.46304 -16.35991 -16.03942 -15.81855 -14.96987 -14.85104 -14.45416 -14.18020 -13.93948 -13.65343 -13.33634 -13.29327 -13.09456 -12.76041 -12.68957 -12.55021 -12.54547 -12.29927 -12.17474 -11.89086 -11.80064 -11.61146 -11.40919 -11.33833 -11.12632 -10.82754 -10.48441 -10.23675 -10.09964 -9.96703 -9.75131 -9.54116 -9.40306 -8.84720 -7.95888 -7.49271 -6.32231 -4.36712 2.20533 2.41378 2.62315 2.97142 3.07414 3.11221 3.16430 3.20315 3.55588 3.71137 4.15484 4.32410 4.39984 4.49168 4.68548 4.79100 4.89024 4.90864 4.94406 5.14917 5.16572 5.29926 5.31965 5.41485 5.54018 5.60615 5.62145 5.65622 5.73110 5.74654 5.99041 6.05164 6.10857 6.14489 6.20882 6.33467 6.36318 6.63074 6.74268 7.16189 7.20918 7.44306 7.55091 7.75610 7.95181 8.17542 8.30728 8.57113 8.73825 9.22340 10.79992 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.002673 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.338078 B =10472.256195 C =12481.476265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.735 5.735 5 C 0.513 3.487 6 O -0.539 6.539 7 C -0.124 4.124 8 C -0.121 4.121 9 C 0.521 3.479 10 O -0.519 6.519 11 N -0.640 5.640 12 C 0.305 3.695 13 C -0.293 4.293 14 C 0.054 3.946 15 C -0.062 4.062 16 N -0.283 5.283 17 N -0.344 5.344 18 C 0.229 3.771 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.874 3.126 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.265 1.265 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.417 0.583 40 H 0.163 0.837 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 -19.462 7.931 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.388 5.388 5 C 0.300 3.700 6 O -0.416 6.416 7 C -0.164 4.164 8 C -0.162 4.162 9 C 0.308 3.692 10 O -0.394 6.394 11 N -0.287 5.287 12 C 0.083 3.917 13 C -0.325 4.325 14 C -0.111 4.111 15 C -0.121 4.121 16 N -0.108 5.108 17 N -0.129 5.129 18 C 0.110 3.890 19 C -0.584 4.584 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.519 5.519 23 Si 0.700 3.300 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.190 1.190 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.253 0.747 40 H 0.181 0.819 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.644 -18.078 7.810 23.402 hybrid contribution -0.862 0.322 0.455 1.027 sum -13.506 -17.756 8.265 23.791 Atomic orbital electron populations 1.21683 0.94524 1.02196 1.02415 1.21741 0.97050 0.95835 1.02801 1.21411 0.79620 0.97144 1.02548 1.46025 1.07388 1.08908 1.76440 1.20753 0.90301 0.83516 0.75411 1.90735 1.70631 1.31206 1.48980 1.21366 0.90782 0.98047 1.06216 1.21332 0.90129 0.98078 1.06651 1.20611 0.90028 0.82772 0.75740 1.90627 1.69743 1.31003 1.48039 1.42824 1.03351 1.10656 1.71869 1.17949 0.81977 0.89305 1.02505 1.21272 0.90614 0.98821 1.21746 1.22060 0.95593 0.91991 1.01501 1.20028 0.92999 0.97040 1.02047 1.77362 0.95879 1.11734 1.25867 1.48900 1.02265 1.05986 1.55734 1.19947 0.95140 0.74172 0.99732 1.21181 1.47777 0.99101 0.90302 0.90068 1.24830 0.94403 0.97438 0.95823 1.69870 1.45276 1.18108 1.18664 0.86894 0.79090 0.81536 0.82488 1.19511 1.20465 1.18989 0.92322 0.92287 0.92155 0.91220 0.91264 0.91476 0.91428 0.76365 0.87697 0.87810 0.87658 0.87353 0.74669 0.81947 0.91342 0.91039 0.91409 0.93187 0.94248 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.14 -0.61 6.05 -26.73 -0.16 -0.77 16 3 C 0.12 0.81 5.67 -4.04 -0.02 0.79 16 4 N -0.73 -5.36 5.56 -60.29 -0.33 -5.70 16 5 C 0.51 5.25 7.83 -10.98 -0.09 5.17 16 6 O -0.54 -7.64 15.98 5.55 0.09 -7.55 16 7 C -0.12 -1.14 4.99 -27.88 -0.14 -1.28 16 8 C -0.12 -1.35 4.99 -27.88 -0.14 -1.49 16 9 C 0.52 7.71 7.79 -10.98 -0.09 7.62 16 10 O -0.52 -8.65 13.11 5.55 0.07 -8.58 16 11 N -0.64 -10.92 5.41 -11.46 -0.06 -10.98 16 12 C 0.30 6.33 7.66 -153.16 -1.17 5.15 16 13 C -0.29 -5.87 9.58 -39.78 -0.38 -6.25 16 14 C 0.05 1.07 7.21 -82.44 -0.59 0.47 16 15 C -0.06 -0.91 10.44 36.00 0.38 -0.53 16 16 N -0.28 -6.52 12.56 33.65 0.42 -6.10 16 17 N -0.34 -7.93 3.60 -61.58 -0.22 -8.16 16 18 C 0.23 5.42 5.08 -5.20 -0.03 5.39 16 19 C -0.55 -15.03 9.94 -34.44 -0.34 -15.38 16 20 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 21 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 22 N -0.88 -25.91 13.96 55.43 0.77 -25.14 16 23 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -5.58 6.54 56.52 0.37 -5.21 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.40 1.84 8.47 -40.82 -0.35 1.49 16 35 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.42 6.54 7.96 -40.82 -0.32 6.22 16 40 H 0.16 3.12 5.83 -52.49 -0.31 2.81 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.19 7.58 -51.93 -0.39 0.79 16 45 H 0.04 0.85 6.54 -51.93 -0.34 0.51 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -35.31 387.58 -7.80 -43.12 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.21 Total: 7.36 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.50 Total: 0.71 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.58 Total: -56.07 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.16 Total: -16.12 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.31 -7.80 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518395769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.318 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds