Wall clock time and date at job start Tue Mar 31 2020 13:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46787 * 2 1 4 4 N 1.46494 * 109.47269 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00310 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00085 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00153 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.46815 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46850 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99978 * 180.02562 * 9 8 7 12 12 C 1.39471 * 119.99891 * 179.97438 * 11 9 8 13 13 C 1.36110 * 126.21626 * 0.14378 * 12 11 9 14 14 C 1.39762 * 107.82869 * 180.26709 * 13 12 11 15 15 C 1.50694 * 125.84077 * 179.72419 * 14 13 12 16 16 N 1.30855 * 108.31847 * 359.75600 * 14 13 12 17 17 N 1.35266 * 126.21450 * 180.02562 * 12 11 9 18 18 C 1.46491 * 126.04623 * 359.97438 * 17 12 11 19 19 C 1.50702 * 109.46957 * 269.71277 * 18 17 12 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 H 1.08997 * 109.47549 * 299.99643 * 1 2 3 28 28 H 1.09004 * 109.47459 * 60.00564 * 1 2 3 29 29 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47049 * 240.00213 * 2 1 3 31 31 H 1.08994 * 109.47513 * 119.99273 * 2 1 3 32 32 H 1.08996 * 109.47144 * 59.99488 * 3 2 1 33 33 H 1.09004 * 109.46660 * 299.99925 * 3 2 1 34 34 H 0.97004 * 119.99888 * 359.97438 * 4 3 2 35 35 H 1.09005 * 109.46661 * 60.00486 * 7 5 4 36 36 H 1.08990 * 109.47176 * 300.00501 * 7 5 4 37 37 H 1.08994 * 109.47657 * 60.00165 * 8 7 5 38 38 H 1.09002 * 109.47185 * 299.99651 * 8 7 5 39 39 H 0.97004 * 120.00013 * 359.97438 * 11 9 8 40 40 H 1.07999 * 126.09101 * 0.05355 * 13 12 11 41 41 H 1.09003 * 109.47188 * 270.01578 * 15 14 13 42 42 H 1.08998 * 109.47119 * 30.01737 * 15 14 13 43 43 H 1.09003 * 109.47108 * 150.01312 * 15 14 13 44 44 H 1.09004 * 109.47166 * 149.71543 * 18 17 12 45 45 H 1.08994 * 109.47507 * 29.71250 * 18 17 12 46 46 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5048 1.4427 -0.0006 5 6 4.1787 2.6099 -0.0012 6 8 3.5723 3.6602 -0.0008 7 6 5.6857 2.6100 -0.0013 8 6 6.1956 4.0525 -0.0014 9 6 7.7026 4.0526 -0.0021 10 8 8.3092 3.0022 -0.0020 11 7 8.3765 5.2199 -0.0018 12 6 9.7712 5.2199 -0.0019 13 6 10.5754 4.1219 -0.0050 14 6 11.9016 4.5628 0.0023 15 6 13.1243 3.6819 0.0078 16 7 11.9000 5.8713 0.0043 17 7 10.5703 6.3113 -0.0011 18 6 10.1239 7.7066 -0.0006 19 6 9.9780 8.1878 -1.4212 20 1 10.1956 7.5209 -2.2424 21 6 9.5607 9.4777 -1.6728 22 7 9.4281 9.8960 -2.9125 23 14 9.1837 10.6310 -0.2525 24 1 10.4157 11.3681 0.1270 25 1 8.1354 11.5985 -0.6654 26 1 8.7002 9.8434 0.9098 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9563 -0.8900 34 1 3.9899 0.6026 -0.0006 35 1 6.0490 2.0957 -0.8911 36 1 6.0491 2.0966 0.8888 37 1 5.8323 4.5664 0.8885 38 1 5.8322 4.5662 -0.8915 39 1 7.8914 6.0599 -0.0015 40 1 10.2472 3.0929 -0.0087 41 1 13.4136 3.4683 1.0368 42 1 12.9017 2.7481 -0.5084 43 1 13.9421 4.1922 -0.5011 44 1 10.8582 8.3228 0.5182 45 1 9.1630 7.7804 0.5085 46 1 9.1349 10.8035 -3.0894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518395769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:59 Heat of formation + Delta-G solvation = -38.074768 kcal Electronic energy + Delta-G solvation = -26326.221887 eV Core-core repulsion = 22444.061910 eV Total energy + Delta-G solvation = -3882.159977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45423 -41.03302 -40.30723 -36.81483 -36.28304 -35.55986 -34.14009 -33.98218 -33.33783 -31.14389 -30.01114 -28.04541 -27.89715 -25.82053 -24.34863 -22.75531 -22.50228 -21.34270 -21.08931 -20.63369 -19.27697 -18.61708 -18.26852 -17.31703 -17.27523 -16.95670 -16.70631 -16.50177 -16.17133 -15.80216 -15.36393 -15.30704 -14.86049 -14.57682 -14.35992 -14.17869 -14.09999 -13.81006 -13.73582 -13.50469 -13.32756 -13.17880 -13.12002 -12.91568 -12.82755 -12.58581 -12.20484 -12.11819 -12.02483 -11.85976 -11.75829 -11.74453 -11.47178 -10.96932 -10.93809 -10.89747 -10.10052 -9.61589 -9.06896 -8.43822 -6.56118 0.77201 1.27355 1.34941 1.35508 1.45077 1.61792 1.63181 2.05648 2.06562 2.23116 2.37039 2.88081 3.41332 3.79097 3.81687 3.91650 4.06448 4.07330 4.11650 4.23261 4.36788 4.45837 4.57765 4.61247 4.67055 4.67735 4.77427 4.83333 4.85644 4.88434 4.90781 4.95302 4.99509 5.14251 5.16130 5.18601 5.23706 5.25327 5.35051 5.50141 5.86977 5.99354 6.19804 6.32685 6.48056 6.53515 6.92901 7.00356 7.08795 7.24071 8.72578 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.002673 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.338078 B =10472.256195 C =12481.476265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.114 3.886 4 N -0.720 5.720 5 C 0.514 3.486 6 O -0.583 6.583 7 C -0.117 4.117 8 C -0.113 4.113 9 C 0.525 3.475 10 O -0.534 6.534 11 N -0.643 5.643 12 C 0.300 3.700 13 C -0.304 4.304 14 C 0.059 3.941 15 C -0.061 4.061 16 N -0.330 5.330 17 N -0.368 5.368 18 C 0.238 3.762 19 C -0.552 4.552 20 H 0.022 0.978 21 C 0.023 3.977 22 N -0.934 5.934 23 Si 0.951 3.049 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.233 1.233 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.418 0.582 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.422 0.578 40 H 0.173 0.827 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 -20.974 10.002 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.373 5.373 5 C 0.301 3.699 6 O -0.464 6.464 7 C -0.157 4.157 8 C -0.153 4.153 9 C 0.314 3.686 10 O -0.410 6.410 11 N -0.290 5.290 12 C 0.078 3.922 13 C -0.336 4.336 14 C -0.106 4.106 15 C -0.119 4.119 16 N -0.155 5.155 17 N -0.154 5.154 18 C 0.118 3.882 19 C -0.590 4.590 20 H 0.041 0.959 21 C -0.177 4.177 22 N -0.572 5.572 23 Si 0.772 3.228 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.156 1.156 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.255 0.745 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.259 0.741 40 H 0.190 0.810 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.498 -19.672 9.888 25.826 hybrid contribution -0.590 0.625 -0.290 0.907 sum -14.088 -19.047 9.598 25.561 Atomic orbital electron populations 1.21703 0.94373 1.02761 1.02141 1.21690 0.97081 0.94004 1.03734 1.21460 0.79284 0.98757 1.01414 1.45947 1.07682 1.08888 1.74788 1.20888 0.90608 0.83545 0.74831 1.90722 1.71447 1.32838 1.51368 1.21338 0.90035 0.96860 1.07431 1.21336 0.86949 0.99771 1.07229 1.21273 0.91201 0.81763 0.74367 1.90602 1.70427 1.31402 1.48571 1.43060 1.02004 1.11810 1.72174 1.18384 0.83549 0.88945 1.01363 1.21517 0.90802 0.99037 1.22206 1.22925 0.97389 0.91530 0.98759 1.20233 0.90831 0.96854 1.04013 1.77304 0.96376 1.13489 1.28323 1.48815 1.02872 1.06049 1.57618 1.19747 0.96362 0.75025 0.97080 1.21214 1.48064 0.98755 0.91004 0.95925 1.25841 0.93680 0.99169 0.99028 1.70030 1.46596 1.18959 1.21603 0.85686 0.79033 0.78893 0.79228 1.19190 1.19897 1.15559 0.92543 0.92708 0.91138 0.90366 0.90166 0.92501 0.92790 0.74535 0.86824 0.86205 0.86389 0.87389 0.74106 0.80971 0.88890 0.88781 0.91127 0.93116 0.91480 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.13 -0.90 6.05 30.59 0.19 -0.72 16 3 C 0.11 1.49 5.67 86.38 0.49 1.98 16 4 N -0.72 -9.27 5.56 -463.06 -2.57 -11.84 16 5 C 0.51 9.80 7.83 87.66 0.69 10.49 16 6 O -0.58 -16.22 15.98 -3.04 -0.05 -16.27 16 7 C -0.12 -1.91 4.99 29.85 0.15 -1.76 16 8 C -0.11 -2.35 4.99 29.85 0.15 -2.20 16 9 C 0.52 14.88 7.79 87.66 0.68 15.56 16 10 O -0.53 -16.99 13.11 -3.07 -0.04 -17.03 16 11 N -0.64 -21.56 5.41 -308.55 -1.67 -23.23 16 12 C 0.30 12.42 7.66 131.32 1.01 13.42 16 13 C -0.30 -12.00 9.58 22.14 0.21 -11.79 16 14 C 0.06 2.32 7.21 43.07 0.31 2.63 16 15 C -0.06 -1.65 10.44 71.23 0.74 -0.91 16 16 N -0.33 -15.35 12.56 -47.45 -0.60 -15.94 16 17 N -0.37 -17.16 3.60 -348.73 -1.26 -18.42 16 18 C 0.24 11.23 5.08 85.64 0.43 11.66 16 19 C -0.55 -31.42 9.94 25.60 0.25 -31.17 16 20 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 21 C 0.02 1.29 5.47 84.66 0.46 1.75 16 22 N -0.93 -56.49 13.96 21.45 0.30 -56.19 16 23 Si 0.95 40.41 27.47 68.60 1.88 42.29 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.23 -8.62 6.54 99.48 0.65 -7.97 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.43 8.14 -2.38 -0.02 0.42 16 29 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.42 2.77 8.47 -92.70 -0.79 1.98 16 35 H 0.11 1.70 8.10 -2.38 -0.02 1.68 16 36 H 0.12 1.62 8.10 -2.39 -0.02 1.60 16 37 H 0.12 2.21 8.10 -2.39 -0.02 2.19 16 38 H 0.11 2.33 8.10 -2.39 -0.02 2.31 16 39 H 0.42 12.99 7.96 -92.70 -0.74 12.26 16 40 H 0.17 6.39 5.83 -2.91 -0.02 6.37 16 41 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 42 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.05 2.37 7.58 -2.38 -0.02 2.35 16 45 H 0.07 2.77 6.54 -2.39 -0.02 2.75 16 46 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -79.84 387.58 1.90 -77.93 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.58 Total: 30.11 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 6.48 Total: 8.59 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -5.80 Total: -125.63 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.09 Total: -33.30 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.88 Total: 42.29 kcal Total: -79.84 1.90 -77.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518395769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.860 kcal (2) G-P(sol) polarization free energy of solvation -79.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds