Wall clock time and date at job start Tue Mar 31 2020 13:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46712 * 2 1 4 4 N 1.46504 * 109.47152 * 120.00009 * 2 1 3 5 5 C 1.46495 * 119.99875 * 322.29537 * 4 2 1 6 6 C 1.50697 * 109.47688 * 269.99987 * 5 4 2 7 7 H 1.08004 * 119.99636 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00266 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99959 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00002 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47233 * 89.99666 * 10 8 6 12 12 H 1.48500 * 109.47189 * 209.99792 * 10 8 6 13 13 H 1.48503 * 109.47211 * 329.99771 * 10 8 6 14 14 C 1.34770 * 119.99873 * 142.29978 * 4 2 1 15 15 O 1.21365 * 120.00014 * 187.63691 * 14 4 2 16 16 C 1.49313 * 120.00143 * 7.63932 * 14 4 2 17 17 O 1.21395 * 119.99785 * 5.87302 * 16 14 4 18 18 N 1.34777 * 120.00011 * 185.87530 * 16 14 4 19 19 C 1.39200 * 119.99939 * 179.72299 * 18 16 14 20 20 C 1.36214 * 126.26815 * 0.02562 * 19 18 16 21 21 C 1.39696 * 107.85399 * 180.02562 * 20 19 18 22 22 N 1.30848 * 108.46137 * 359.97438 * 21 20 19 23 23 N 1.35849 * 126.27096 * 179.71688 * 19 18 16 24 24 C 1.46500 * 126.10096 * 359.95451 * 23 19 18 25 25 C 1.53007 * 109.46819 * 120.00139 * 24 23 19 26 26 C 1.52990 * 109.47329 * 240.00468 * 24 23 19 27 27 H 1.09007 * 109.46994 * 296.22238 * 1 2 3 28 28 H 1.09001 * 109.47361 * 56.21896 * 1 2 3 29 29 H 1.08997 * 109.47169 * 176.22594 * 1 2 3 30 30 H 1.08999 * 109.47031 * 240.00151 * 2 1 3 31 31 H 1.09007 * 109.46909 * 184.47012 * 3 2 1 32 32 H 1.08989 * 109.47536 * 304.47297 * 3 2 1 33 33 H 1.09003 * 109.46930 * 64.48144 * 3 2 1 34 34 H 1.09004 * 109.47417 * 30.00546 * 5 4 2 35 35 H 1.09003 * 109.46890 * 149.99884 * 5 4 2 36 36 H 0.97000 * 120.00089 * 179.97438 * 9 8 6 37 37 H 0.97004 * 120.00068 * 359.97438 * 18 16 14 38 38 H 1.08003 * 126.07514 * 0.02562 * 20 19 18 39 39 H 1.08002 * 125.76962 * 180.02562 * 21 20 19 40 40 H 1.09006 * 109.46764 * 0.02562 * 24 23 19 41 41 H 1.08996 * 109.46973 * 300.00415 * 25 24 23 42 42 H 1.08993 * 109.46830 * 60.00473 * 25 24 23 43 43 H 1.08998 * 109.46733 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.47237 * 60.00115 * 26 24 23 45 45 H 1.09005 * 109.47285 * 180.02562 * 26 24 23 46 46 H 1.08997 * 109.47472 * 299.99643 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.3161 -0.5312 2.4720 6 6 1.8945 0.6417 3.2207 7 1 2.7040 1.2118 2.7892 8 6 1.3903 0.9871 4.4567 9 7 0.4043 0.2933 4.9819 10 14 2.1068 2.4415 5.3844 11 1 1.3696 3.6764 5.0146 12 1 1.9797 2.2080 6.8454 13 1 3.5408 2.5965 5.0308 14 6 3.1136 -1.4725 1.1229 15 8 3.4384 -2.1526 2.0741 16 6 3.9275 -1.5019 -0.1286 17 8 3.6663 -0.7443 -1.0404 18 7 4.9521 -2.3697 -0.2458 19 6 5.7072 -2.4011 -1.4148 20 6 5.5246 -1.6168 -2.5134 21 6 6.4922 -1.9696 -3.4571 22 7 7.2314 -2.9256 -2.9553 23 7 6.7649 -3.2155 -1.6666 24 6 7.3174 -4.2200 -0.7544 25 6 7.2327 -5.6019 -1.4058 26 6 8.7800 -3.8865 -0.4540 27 1 -0.3633 0.4541 0.9220 28 1 -0.3634 0.5714 -0.8542 29 1 -0.3633 -1.0254 -0.0676 30 1 1.8933 -0.5138 -0.8900 31 1 3.1270 1.4437 -0.0801 32 1 1.6126 1.9790 -0.8471 33 1 1.7435 1.9327 0.9274 34 1 0.2568 -0.3559 2.2843 35 1 1.4345 -1.4365 3.0674 36 1 0.0498 0.5360 5.8516 37 1 5.1610 -2.9749 0.4830 38 1 4.7663 -0.8571 -2.6335 39 1 6.6108 -1.5274 -4.4353 40 1 6.7464 -4.2206 0.1741 41 1 6.1907 -5.8394 -1.6198 42 1 7.8034 -5.6014 -2.3343 43 1 7.6433 -6.3492 -0.7269 44 1 8.8403 -2.9021 0.0100 45 1 9.1912 -4.6341 0.2244 46 1 9.3507 -3.8861 -1.3826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527104204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:58 Heat of formation + Delta-G solvation = 26.576288 kcal Electronic energy + Delta-G solvation = -28206.078430 eV Core-core repulsion = 24326.721933 eV Total energy + Delta-G solvation = -3879.356497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65703 -40.30515 -38.17419 -36.53142 -35.86404 -34.74283 -32.87680 -30.96053 -30.22984 -29.17968 -27.89186 -27.59582 -26.65460 -24.87290 -23.20142 -22.85096 -21.57747 -20.70989 -20.01373 -19.10210 -18.03203 -16.95511 -16.54171 -16.42733 -15.87041 -15.31719 -15.04652 -14.94896 -14.82380 -14.46242 -14.02396 -13.86886 -13.64858 -13.32429 -13.12916 -13.09780 -12.53234 -12.45243 -12.41544 -12.31009 -11.88218 -11.71836 -11.68309 -11.56659 -11.29756 -11.15990 -11.13753 -10.92987 -10.75662 -10.57087 -10.48570 -10.25015 -10.06586 -9.63608 -9.05955 -8.83501 -8.50092 -8.15876 -7.87562 -6.13227 -4.17759 1.33791 1.91300 2.14166 2.75837 2.91075 3.25661 3.32602 3.36494 3.60547 3.81992 4.16930 4.36533 4.55152 4.58889 4.66378 4.85805 5.21065 5.22073 5.23748 5.28244 5.41981 5.42896 5.49379 5.57187 5.65351 5.76605 5.83385 5.84744 5.94828 6.07392 6.16145 6.24323 6.37016 6.45750 6.68757 6.70221 6.83314 6.85090 6.98863 7.08033 7.26525 7.34915 7.68447 7.76320 7.84477 8.10394 8.13648 8.51746 8.86457 9.46807 10.94904 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.003402 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.649579 B = 8227.823798 C = 8946.376825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 C -0.154 4.154 4 N -0.548 5.548 5 C 0.236 3.764 6 C -0.528 4.528 7 H 0.061 0.939 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.503 3.497 15 O -0.526 6.526 16 C 0.513 3.487 17 O -0.479 6.479 18 N -0.630 5.630 19 C 0.307 3.693 20 C -0.280 4.280 21 C 0.056 3.944 22 N -0.289 5.289 23 N -0.383 5.383 24 C 0.154 3.846 25 C -0.159 4.159 26 C -0.160 4.160 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.420 0.580 38 H 0.174 0.826 39 H 0.184 0.816 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.603 -7.286 -13.896 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 C -0.212 4.212 4 N -0.279 5.279 5 C 0.118 3.882 6 C -0.566 4.566 7 H 0.079 0.921 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.725 3.275 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.282 3.718 15 O -0.404 6.404 16 C 0.296 3.704 17 O -0.350 6.350 18 N -0.279 5.279 19 C 0.088 3.912 20 C -0.311 4.311 21 C -0.130 4.130 22 N -0.111 5.111 23 N -0.173 5.173 24 C 0.052 3.948 25 C -0.217 4.217 26 C -0.217 4.217 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.257 0.743 38 H 0.191 0.809 39 H 0.201 0.799 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.385 -7.946 -13.910 19.091 hybrid contribution -0.180 1.093 1.202 1.635 sum 10.205 -6.853 -12.708 17.680 Atomic orbital electron populations 1.22183 0.95055 1.01760 1.03084 1.21641 0.94289 0.94541 0.88150 1.22103 1.01030 0.95707 1.02349 1.48311 1.24749 1.42186 1.12687 1.19608 0.92608 0.98403 0.77623 1.21397 1.18989 1.13415 1.02839 0.92088 1.24910 0.94977 0.96956 0.97049 1.69923 1.25608 1.39616 1.17939 0.86505 0.79580 0.82407 0.79023 1.20516 1.21070 1.19879 1.19275 0.83103 0.82908 0.86470 1.90742 1.69433 1.42299 1.37945 1.21007 0.80417 0.79708 0.89221 1.90591 1.65898 1.38058 1.40493 1.42647 1.30456 1.39072 1.15746 1.18184 0.89086 0.94973 0.88965 1.21698 1.07822 1.08519 0.93065 1.23731 0.93892 0.95168 1.00185 1.77329 1.22926 1.19746 0.91112 1.49012 1.24059 1.30868 1.13337 1.21274 0.96119 0.86948 0.90434 1.22121 1.03093 0.94348 1.02132 1.22120 0.94125 1.02482 1.03014 0.90497 0.92023 0.92944 0.87571 0.92958 0.92885 0.90760 0.93224 0.93451 0.92603 0.74259 0.80919 0.79871 0.88799 0.92056 0.90915 0.90621 0.91981 0.90605 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.65 37.16 0.32 -2.26 16 2 C 0.12 2.04 2.56 -67.93 -0.17 1.86 16 3 C -0.15 -2.65 9.04 37.16 0.34 -2.32 16 4 N -0.55 -11.33 2.38 -168.03 -0.40 -11.73 16 5 C 0.24 5.79 4.95 -5.20 -0.03 5.77 16 6 C -0.53 -14.12 8.32 -34.44 -0.29 -14.41 16 7 H 0.06 1.64 7.35 -52.48 -0.39 1.26 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 10 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 14 C 0.50 10.08 7.71 -11.65 -0.09 9.99 16 15 O -0.53 -11.78 16.04 5.48 0.09 -11.69 16 16 C 0.51 8.60 7.65 -11.65 -0.09 8.51 16 17 O -0.48 -8.03 9.40 5.46 0.05 -7.98 16 18 N -0.63 -8.99 5.40 -11.80 -0.06 -9.05 16 19 C 0.31 4.30 7.68 -152.86 -1.17 3.13 16 20 C -0.28 -3.89 9.65 -39.77 -0.38 -4.27 16 21 C 0.06 0.68 12.00 -17.43 -0.21 0.47 16 22 N -0.29 -3.76 12.42 30.59 0.38 -3.38 16 23 N -0.38 -4.76 3.30 -53.80 -0.18 -4.94 16 24 C 0.15 1.46 3.70 -67.93 -0.25 1.20 16 25 C -0.16 -1.28 9.45 37.16 0.35 -0.93 16 26 C -0.16 -1.34 9.46 37.15 0.35 -0.99 16 27 H 0.08 1.38 6.25 -51.93 -0.32 1.06 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.11 1.76 5.13 -52.00 -0.27 1.50 16 31 H 0.05 0.93 7.36 -51.92 -0.38 0.55 16 32 H 0.05 0.77 8.14 -51.94 -0.42 0.35 16 33 H 0.07 1.45 6.73 -51.93 -0.35 1.10 16 34 H 0.05 1.22 5.57 -51.93 -0.29 0.93 16 35 H 0.05 1.30 7.33 -51.93 -0.38 0.92 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.42 5.37 7.03 -40.82 -0.29 5.08 16 38 H 0.17 2.52 5.83 -52.48 -0.31 2.21 16 39 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.09 0.79 6.84 -51.93 -0.36 0.44 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -30.83 374.45 -6.87 -37.71 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.69 Total: 6.49 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -1.42 Total: 7.40 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.47 Total: -53.68 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.14 Total: -19.67 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.83 -6.87 -37.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527104204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.283 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds