Wall clock time and date at job start Tue Mar 31 2020 13:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46712 * 2 1 4 4 N 1.46504 * 109.47152 * 120.00009 * 2 1 3 5 5 C 1.46495 * 119.99875 * 322.29537 * 4 2 1 6 6 C 1.50697 * 109.47688 * 269.99987 * 5 4 2 7 7 H 1.08004 * 119.99636 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00266 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99959 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00002 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47233 * 89.99666 * 10 8 6 12 12 H 1.48500 * 109.47189 * 209.99792 * 10 8 6 13 13 H 1.48503 * 109.47211 * 329.99771 * 10 8 6 14 14 C 1.34770 * 119.99873 * 142.29978 * 4 2 1 15 15 O 1.21365 * 120.00014 * 187.63691 * 14 4 2 16 16 C 1.49313 * 120.00143 * 7.63932 * 14 4 2 17 17 O 1.21395 * 119.99785 * 5.87302 * 16 14 4 18 18 N 1.34777 * 120.00011 * 185.87530 * 16 14 4 19 19 C 1.39200 * 119.99939 * 179.72299 * 18 16 14 20 20 C 1.36214 * 126.26815 * 0.02562 * 19 18 16 21 21 C 1.39696 * 107.85399 * 180.02562 * 20 19 18 22 22 N 1.30848 * 108.46137 * 359.97438 * 21 20 19 23 23 N 1.35849 * 126.27096 * 179.71688 * 19 18 16 24 24 C 1.46500 * 126.10096 * 359.95451 * 23 19 18 25 25 C 1.53007 * 109.46819 * 120.00139 * 24 23 19 26 26 C 1.52990 * 109.47329 * 240.00468 * 24 23 19 27 27 H 1.09007 * 109.46994 * 296.22238 * 1 2 3 28 28 H 1.09001 * 109.47361 * 56.21896 * 1 2 3 29 29 H 1.08997 * 109.47169 * 176.22594 * 1 2 3 30 30 H 1.08999 * 109.47031 * 240.00151 * 2 1 3 31 31 H 1.09007 * 109.46909 * 184.47012 * 3 2 1 32 32 H 1.08989 * 109.47536 * 304.47297 * 3 2 1 33 33 H 1.09003 * 109.46930 * 64.48144 * 3 2 1 34 34 H 1.09004 * 109.47417 * 30.00546 * 5 4 2 35 35 H 1.09003 * 109.46890 * 149.99884 * 5 4 2 36 36 H 0.97000 * 120.00089 * 179.97438 * 9 8 6 37 37 H 0.97004 * 120.00068 * 359.97438 * 18 16 14 38 38 H 1.08003 * 126.07514 * 0.02562 * 20 19 18 39 39 H 1.08002 * 125.76962 * 180.02562 * 21 20 19 40 40 H 1.09006 * 109.46764 * 0.02562 * 24 23 19 41 41 H 1.08996 * 109.46973 * 300.00415 * 25 24 23 42 42 H 1.08993 * 109.46830 * 60.00473 * 25 24 23 43 43 H 1.08998 * 109.46733 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.47237 * 60.00115 * 26 24 23 45 45 H 1.09005 * 109.47285 * 180.02562 * 26 24 23 46 46 H 1.08997 * 109.47472 * 299.99643 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.3161 -0.5312 2.4720 6 6 1.8945 0.6417 3.2207 7 1 2.7040 1.2118 2.7892 8 6 1.3903 0.9871 4.4567 9 7 0.4043 0.2933 4.9819 10 14 2.1068 2.4415 5.3844 11 1 1.3696 3.6764 5.0146 12 1 1.9797 2.2080 6.8454 13 1 3.5408 2.5965 5.0308 14 6 3.1136 -1.4725 1.1229 15 8 3.4384 -2.1526 2.0741 16 6 3.9275 -1.5019 -0.1286 17 8 3.6663 -0.7443 -1.0404 18 7 4.9521 -2.3697 -0.2458 19 6 5.7072 -2.4011 -1.4148 20 6 5.5246 -1.6168 -2.5134 21 6 6.4922 -1.9696 -3.4571 22 7 7.2314 -2.9256 -2.9553 23 7 6.7649 -3.2155 -1.6666 24 6 7.3174 -4.2200 -0.7544 25 6 7.2327 -5.6019 -1.4058 26 6 8.7800 -3.8865 -0.4540 27 1 -0.3633 0.4541 0.9220 28 1 -0.3634 0.5714 -0.8542 29 1 -0.3633 -1.0254 -0.0676 30 1 1.8933 -0.5138 -0.8900 31 1 3.1270 1.4437 -0.0801 32 1 1.6126 1.9790 -0.8471 33 1 1.7435 1.9327 0.9274 34 1 0.2568 -0.3559 2.2843 35 1 1.4345 -1.4365 3.0674 36 1 0.0498 0.5360 5.8516 37 1 5.1610 -2.9749 0.4830 38 1 4.7663 -0.8571 -2.6335 39 1 6.6108 -1.5274 -4.4353 40 1 6.7464 -4.2206 0.1741 41 1 6.1907 -5.8394 -1.6198 42 1 7.8034 -5.6014 -2.3343 43 1 7.6433 -6.3492 -0.7269 44 1 8.8403 -2.9021 0.0100 45 1 9.1912 -4.6341 0.2244 46 1 9.3507 -3.8861 -1.3826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527104204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:57 Heat of formation + Delta-G solvation = 8.185411 kcal Electronic energy + Delta-G solvation = -28206.875918 eV Core-core repulsion = 24326.721933 eV Total energy + Delta-G solvation = -3880.153985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.77745 -41.65025 -39.65218 -38.07715 -36.66538 -36.00238 -34.89075 -32.55900 -31.17245 -30.36766 -29.63815 -28.24636 -28.07620 -26.44234 -24.59090 -24.05017 -22.93980 -21.97756 -21.11406 -20.36625 -19.14516 -18.67500 -18.24144 -17.90984 -17.18053 -16.81516 -16.39162 -16.17526 -15.97910 -15.64367 -15.34449 -15.18681 -14.98845 -14.67329 -14.30649 -14.05256 -13.94796 -13.86680 -13.48903 -13.37229 -13.14656 -13.10030 -12.95819 -12.83691 -12.58152 -12.42611 -12.37802 -12.29594 -12.27236 -12.17336 -12.09947 -11.71890 -11.53552 -11.45925 -10.59839 -10.33511 -10.00141 -9.63392 -9.23095 -8.21750 -6.33661 0.00709 0.75318 0.98482 1.38813 1.40161 1.50039 1.65492 1.85722 2.14574 2.35405 2.46324 3.07022 3.13693 3.39442 3.89006 3.95219 4.03359 4.04965 4.22308 4.28684 4.37265 4.54364 4.65241 4.66441 4.71156 4.76454 4.77575 4.86278 4.89704 4.96483 5.03461 5.06225 5.14921 5.18049 5.18318 5.20031 5.39111 5.51959 5.55292 5.68590 5.74527 5.80084 5.96260 6.04802 6.37527 6.58174 6.71407 6.71749 6.94170 7.35230 8.85831 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.003402 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.649579 B = 8227.823798 C = 8946.376825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 C -0.146 4.146 4 N -0.554 5.554 5 C 0.251 3.749 6 C -0.536 4.536 7 H 0.054 0.946 8 C 0.015 3.985 9 N -0.923 5.923 10 Si 0.959 3.041 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.274 1.274 14 C 0.496 3.504 15 O -0.557 6.557 16 C 0.524 3.476 17 O -0.478 6.478 18 N -0.617 5.617 19 C 0.290 3.710 20 C -0.290 4.290 21 C 0.060 3.940 22 N -0.299 5.299 23 N -0.380 5.380 24 C 0.140 3.860 25 C -0.152 4.152 26 C -0.153 4.153 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.010 0.990 36 H 0.267 0.733 37 H 0.426 0.574 38 H 0.167 0.833 39 H 0.217 0.783 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.101 0.899 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.703 -7.021 -15.342 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 C -0.204 4.204 4 N -0.285 5.285 5 C 0.131 3.869 6 C -0.575 4.575 7 H 0.073 0.927 8 C -0.184 4.184 9 N -0.563 5.563 10 Si 0.784 3.216 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.277 3.723 15 O -0.437 6.437 16 C 0.306 3.694 17 O -0.350 6.350 18 N -0.266 5.266 19 C 0.070 3.930 20 C -0.322 4.322 21 C -0.126 4.126 22 N -0.121 5.121 23 N -0.169 5.169 24 C 0.040 3.960 25 C -0.210 4.210 26 C -0.211 4.211 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.265 0.735 38 H 0.184 0.816 39 H 0.234 0.766 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.067 0.933 45 H 0.119 0.881 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.510 -7.694 -15.391 20.702 hybrid contribution -0.476 0.946 1.588 1.909 sum 11.034 -6.748 -13.803 18.916 Atomic orbital electron populations 1.22138 0.93760 1.02433 1.03134 1.21920 0.95382 0.94509 0.87076 1.22024 1.00546 0.95572 1.02268 1.48300 1.24971 1.42792 1.12433 1.19118 0.92839 0.95941 0.78963 1.21610 1.18728 1.13838 1.03324 0.92734 1.25701 0.95310 0.99500 0.97927 1.70026 1.26739 1.41119 1.18400 0.85536 0.78727 0.79595 0.77708 1.19209 1.20669 1.19926 1.19825 0.82954 0.82028 0.87444 1.90713 1.70123 1.43383 1.39494 1.20101 0.80878 0.80542 0.87863 1.90588 1.66226 1.38304 1.39922 1.42345 1.29651 1.38308 1.16267 1.18240 0.89945 0.96080 0.88739 1.21793 1.08233 1.08490 0.93642 1.24229 0.92736 0.94529 1.01107 1.77313 1.23272 1.20104 0.91396 1.49283 1.23377 1.30804 1.13449 1.21653 0.96821 0.87054 0.90474 1.22081 1.02577 0.94017 1.02298 1.22087 0.93306 1.02603 1.03112 0.93113 0.88693 0.92476 0.86101 0.93874 0.89694 0.93430 0.93488 0.97199 0.92394 0.73529 0.81612 0.76639 0.87946 0.92932 0.91640 0.88084 0.93252 0.88051 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 8.65 71.98 0.62 -4.19 16 2 C 0.11 3.85 2.56 44.99 0.12 3.97 16 3 C -0.15 -4.90 9.04 71.98 0.65 -4.24 16 4 N -0.55 -23.33 2.38 -803.88 -1.91 -25.24 16 5 C 0.25 12.80 4.95 85.63 0.42 13.23 16 6 C -0.54 -29.38 8.32 25.60 0.21 -29.16 16 7 H 0.05 3.00 7.35 -2.91 -0.02 2.97 16 8 C 0.02 0.84 5.46 84.65 0.46 1.30 16 9 N -0.92 -53.39 13.29 21.45 0.28 -53.10 16 10 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 14 C 0.50 20.24 7.71 87.23 0.67 20.92 16 15 O -0.56 -25.71 16.04 -3.29 -0.05 -25.77 16 16 C 0.52 17.37 7.65 87.23 0.67 18.04 16 17 O -0.48 -15.56 9.40 -3.39 -0.03 -15.59 16 18 N -0.62 -17.25 5.40 -309.57 -1.67 -18.92 16 19 C 0.29 7.79 7.68 131.25 1.01 8.80 16 20 C -0.29 -7.67 9.65 22.15 0.21 -7.45 16 21 C 0.06 1.32 12.00 85.19 1.02 2.34 16 22 N -0.30 -7.26 12.42 -57.13 -0.71 -7.97 16 23 N -0.38 -8.95 3.30 -324.13 -1.07 -10.02 16 24 C 0.14 2.44 3.70 44.99 0.17 2.61 16 25 C -0.15 -2.17 9.45 71.98 0.68 -1.49 16 26 C -0.15 -2.31 9.46 71.98 0.68 -1.63 16 27 H 0.05 1.83 6.25 -2.38 -0.01 1.81 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.12 3.83 5.13 -3.51 -0.02 3.81 16 31 H 0.04 1.50 7.36 -2.38 -0.02 1.48 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.84 6.73 -2.39 -0.02 1.83 16 34 H 0.05 2.41 5.57 -2.38 -0.01 2.40 16 35 H 0.01 0.58 7.33 -2.39 -0.02 0.56 16 36 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.43 10.75 7.03 -92.71 -0.65 10.09 16 38 H 0.17 4.61 5.83 -2.91 -0.02 4.60 16 39 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.10 1.59 6.84 -2.38 -0.02 1.57 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -67.38 374.45 4.81 -62.57 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.35 Total: 25.39 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 7.60 Total: 23.02 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.08 Total: -115.26 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.08 Total: -41.35 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -67.38 4.81 -62.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527104204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.760 kcal (2) G-P(sol) polarization free energy of solvation -67.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds