Wall clock time and date at job start Tue Mar 31 2020 14:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47648 * 2 1 4 4 O 1.42902 * 109.47284 * 120.00560 * 2 1 3 5 5 C 1.42896 * 114.00499 * 146.70667 * 4 2 1 6 6 C 1.53001 * 115.55060 * 80.15753 * 5 4 2 7 7 C 1.52996 * 117.51896 * 225.86301 * 5 4 2 8 8 C 1.53001 * 60.00363 * 107.47658 * 7 5 4 9 9 H 1.09000 * 117.51898 * 107.47466 * 8 7 5 10 10 N 1.46494 * 117.50119 * 252.51112 * 8 7 5 11 11 C 1.34776 * 120.00070 * 223.61682 * 10 8 7 12 12 O 1.21842 * 119.99896 * 359.97438 * 11 10 8 13 13 N 1.33838 * 120.00257 * 180.02562 * 11 10 8 14 14 C 1.32931 * 120.00126 * 180.02562 * 13 11 10 15 15 C 1.41209 * 126.37729 * 0.24799 * 14 13 11 16 16 C 1.34958 * 108.24117 * 180.20448 * 15 14 13 17 17 N 1.36456 * 108.94895 * 359.58426 * 16 15 14 18 18 C 1.46498 * 125.85531 * 180.30289 * 17 16 15 19 19 C 1.50700 * 109.47617 * 84.97053 * 18 17 16 20 20 H 1.08001 * 119.99600 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00301 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00075 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47364 * 59.99518 * 23 21 19 25 25 H 1.48501 * 109.46956 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46925 * 299.99294 * 23 21 19 27 27 N 1.37421 * 126.37783 * 179.97438 * 14 13 11 28 28 H 0.97002 * 126.36408 * 359.96003 * 27 14 13 29 29 H 1.09008 * 109.46636 * 300.00206 * 1 2 3 30 30 H 1.08997 * 109.47018 * 59.99281 * 1 2 3 31 31 H 1.08996 * 109.47582 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47146 * 240.00231 * 2 1 3 33 33 H 1.09002 * 109.46659 * 59.99933 * 3 2 1 34 34 H 1.09005 * 109.47620 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47138 * 300.00519 * 3 2 1 36 36 H 1.09004 * 109.46985 * 270.87210 * 6 5 4 37 37 H 1.08994 * 109.47243 * 30.87442 * 6 5 4 38 38 H 1.09000 * 109.46908 * 150.87438 * 6 5 4 39 39 H 1.08997 * 117.50187 * 359.97438 * 7 5 4 40 40 H 1.08997 * 117.50125 * 214.96573 * 7 5 4 41 41 H 0.97003 * 119.99987 * 43.62467 * 10 8 7 42 42 H 1.07997 * 125.88206 * 0.07582 * 15 14 13 43 43 H 1.08001 * 125.52559 * 179.85098 * 16 15 14 44 44 H 1.09003 * 109.47334 * 204.97683 * 18 17 16 45 45 H 1.09007 * 109.47027 * 324.97349 * 18 17 16 46 46 H 0.97006 * 119.99978 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 3.2289 -1.3865 0.9680 6 6 4.5011 -0.5373 1.0037 7 6 3.3145 -2.8108 1.5200 8 6 3.2030 -2.5804 0.0115 9 1 4.0923 -2.7606 -0.5925 10 7 1.9268 -2.9057 -0.6300 11 6 1.9122 -3.5649 -1.8055 12 8 2.9604 -3.8899 -2.3348 13 7 0.7463 -3.8617 -2.3918 14 6 0.7318 -4.5123 -3.5509 15 6 1.8591 -4.9567 -4.2760 16 6 1.4254 -5.5677 -5.3985 17 7 0.0613 -5.5414 -5.4185 18 6 -0.7926 -6.1066 -6.4662 19 6 -1.0182 -7.5717 -6.1946 20 1 -0.5706 -8.0353 -5.3279 21 6 -1.7959 -8.3201 -7.0524 22 7 -2.3413 -7.7553 -8.1075 23 14 -2.0761 -10.1359 -6.7153 24 1 -2.7389 -10.2980 -5.3964 25 1 -2.9416 -10.7087 -7.7774 26 1 -0.7710 -10.8444 -6.7040 27 7 -0.3831 -4.8823 -4.2641 28 1 -1.3060 -4.7177 -4.0150 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.1302 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 4.7199 -0.1684 0.0016 37 1 4.3558 0.3067 1.6779 38 1 5.3339 -1.1453 1.3570 39 1 2.4384 -3.2044 2.0352 40 1 4.2771 -3.1430 1.9086 41 1 1.0923 -2.6466 -0.2088 42 1 2.8908 -4.8278 -3.9838 43 1 2.0557 -6.0099 -6.1559 44 1 -1.7506 -5.5867 -6.4740 45 1 -0.3067 -5.9873 -7.4347 46 1 -2.8888 -8.2818 -8.7109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528986881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:03 Heat of formation + Delta-G solvation = 51.294657 kcal Electronic energy + Delta-G solvation = -27014.613786 eV Core-core repulsion = 23136.329158 eV Total energy + Delta-G solvation = -3878.284628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80225 -39.90466 -38.37149 -35.99760 -34.28010 -33.04217 -32.89959 -31.73325 -31.04998 -30.52214 -28.54868 -27.15297 -26.66296 -23.58273 -22.60056 -21.69354 -21.38349 -21.14630 -20.26488 -19.74406 -17.53441 -17.02231 -16.74984 -16.21304 -15.42149 -15.20475 -15.12176 -14.94366 -14.85842 -14.34291 -14.18248 -13.96569 -13.48369 -13.24527 -13.12442 -13.03603 -12.75390 -12.67909 -12.54573 -12.33619 -12.28646 -12.05485 -11.96894 -11.72112 -11.39895 -11.08809 -11.04700 -10.74612 -10.55017 -10.42662 -10.01907 -9.85472 -9.74897 -9.59056 -9.04407 -8.92085 -8.39562 -8.29410 -6.90917 -6.49123 -4.66061 1.76158 2.06382 3.04866 3.07247 3.12805 3.15887 3.17207 3.56458 3.87075 4.05895 4.40071 4.56814 4.61878 4.81040 4.83108 4.87790 4.91026 5.03075 5.18463 5.26224 5.31391 5.48338 5.49822 5.56206 5.62487 5.66983 5.70908 5.75916 5.85371 5.89447 5.97798 6.01000 6.06738 6.12503 6.26933 6.51864 6.55266 6.70704 7.00384 7.24140 7.34658 7.39094 7.51074 7.61317 7.84318 8.26293 8.39864 8.44554 9.04574 9.57677 10.52191 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.002310 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.603678 B =12119.745345 C =12494.568057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.172 4.172 4 O -0.344 6.344 5 C 0.022 3.978 6 C -0.130 4.130 7 C -0.175 4.175 8 C 0.096 3.904 9 H 0.139 0.861 10 N -0.698 5.698 11 C 0.689 3.311 12 O -0.630 6.630 13 N -0.712 5.712 14 C 0.487 3.513 15 C -0.333 4.333 16 C 0.162 3.838 17 N -0.345 5.345 18 C 0.255 3.745 19 C -0.559 4.559 20 H 0.069 0.931 21 C 0.070 3.930 22 N -0.887 5.887 23 Si 0.910 3.090 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.271 1.271 27 N -0.470 5.470 28 H 0.444 0.556 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.400 0.600 42 H 0.183 0.817 43 H 0.187 0.813 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.835 12.741 11.731 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 C -0.230 4.230 4 O -0.263 6.263 5 C -0.020 4.020 6 C -0.187 4.187 7 C -0.214 4.214 8 C -0.013 4.013 9 H 0.156 0.844 10 N -0.350 5.350 11 C 0.388 3.612 12 O -0.513 6.513 13 N -0.477 5.477 14 C 0.234 3.766 15 C -0.366 4.366 16 C 0.017 3.983 17 N -0.131 5.131 18 C 0.139 3.861 19 C -0.597 4.597 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.524 5.524 23 Si 0.736 3.264 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.193 5.193 28 H 0.291 0.709 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.235 0.765 42 H 0.200 0.800 43 H 0.204 0.796 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.337 12.640 11.545 18.625 hybrid contribution -0.515 -0.997 0.012 1.123 sum 6.822 11.643 11.557 17.766 Atomic orbital electron populations 1.21880 0.93676 1.02916 1.02203 1.22182 0.94706 0.92362 0.88871 1.22333 1.01627 0.96871 1.02161 1.87881 1.37424 1.66787 1.34179 1.22586 0.86831 0.87082 1.05472 1.21688 0.94688 0.99972 1.02400 1.23898 1.04080 0.95384 0.98081 1.21981 0.89945 0.99489 0.89875 0.84369 1.44055 1.06939 1.61331 1.22703 1.16559 0.85411 0.78175 0.81046 1.90722 1.36484 1.58960 1.65096 1.68017 1.28998 1.37301 1.13401 1.18682 0.84258 0.85946 0.87756 1.22388 1.01570 1.14548 0.98122 1.22812 0.82466 0.94309 0.98723 1.47997 1.05591 1.47448 1.12051 1.20038 0.89943 0.93995 0.82124 1.21380 1.33547 0.92979 1.11763 0.91273 1.24952 0.94452 0.99730 0.94366 1.69890 1.31937 1.37334 1.13198 0.86345 0.78665 0.83103 0.78263 1.19862 1.20805 1.19660 1.44448 1.08099 1.52455 1.14303 0.70873 0.92141 0.91241 0.91767 0.91004 0.92151 0.92342 0.91899 0.91869 0.91281 0.91177 0.87981 0.87234 0.76476 0.79985 0.79619 0.93114 0.91404 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.54 37.16 0.35 -1.20 16 2 C 0.08 0.86 2.41 -26.73 -0.06 0.79 16 3 C -0.17 -1.62 9.44 37.16 0.35 -1.27 16 4 O -0.34 -4.21 9.75 -35.23 -0.34 -4.56 16 5 C 0.02 0.25 2.44 -90.62 -0.22 0.03 16 6 C -0.13 -1.15 8.82 37.16 0.33 -0.82 16 7 C -0.18 -1.92 10.05 -26.73 -0.27 -2.19 16 8 C 0.10 1.28 5.70 -67.93 -0.39 0.89 16 9 H 0.14 1.96 7.40 -51.93 -0.38 1.58 16 10 N -0.70 -11.01 4.25 -58.87 -0.25 -11.26 16 11 C 0.69 13.41 8.47 -87.75 -0.74 12.67 16 12 O -0.63 -13.48 12.83 5.06 0.06 -13.41 16 13 N -0.71 -13.98 10.59 -15.79 -0.17 -14.14 16 14 C 0.49 9.40 8.07 -155.29 -1.25 8.15 16 15 C -0.33 -6.19 9.52 -39.62 -0.38 -6.57 16 16 C 0.16 2.72 11.45 -16.66 -0.19 2.53 16 17 N -0.35 -6.36 3.63 -62.24 -0.23 -6.58 16 18 C 0.26 5.28 6.19 -5.19 -0.03 5.25 16 19 C -0.56 -13.23 9.39 -34.44 -0.32 -13.55 16 20 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 21 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -22.45 13.29 55.43 0.74 -21.71 16 23 Si 0.91 19.24 29.54 -169.99 -5.02 14.22 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 N -0.47 -8.35 7.38 31.33 0.23 -8.12 16 28 H 0.44 6.97 8.96 -182.55 -1.64 5.33 16 29 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.72 7.35 -51.93 -0.38 0.34 16 32 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.53 6.70 -51.93 -0.35 0.18 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.55 7.89 -51.93 -0.41 0.14 16 37 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.07 0.52 7.88 -51.93 -0.41 0.11 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.11 0.96 8.04 -51.93 -0.42 0.55 16 41 H 0.40 6.01 7.17 -40.82 -0.29 5.71 16 42 H 0.18 3.57 5.77 -52.49 -0.30 3.26 16 43 H 0.19 2.46 8.06 -52.49 -0.42 2.04 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 46 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -28.79 382.42 -10.40 -39.19 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -8.26 Total: 14.29 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -2.93 Total: 6.31 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.32 Total: -61.81 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.28 Total: -17.97 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.79 -10.40 -39.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528986881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.489 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds