Wall clock time and date at job start Tue Mar 31 2020 14:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47648 * 2 1 4 4 O 1.42902 * 109.47284 * 120.00560 * 2 1 3 5 5 C 1.42896 * 114.00499 * 146.70667 * 4 2 1 6 6 C 1.53001 * 115.55060 * 80.15753 * 5 4 2 7 7 C 1.52996 * 117.51896 * 225.86301 * 5 4 2 8 8 C 1.53001 * 60.00363 * 107.47658 * 7 5 4 9 9 H 1.09000 * 117.51898 * 107.47466 * 8 7 5 10 10 N 1.46494 * 117.50119 * 252.51112 * 8 7 5 11 11 C 1.34776 * 120.00070 * 223.61682 * 10 8 7 12 12 O 1.21842 * 119.99896 * 359.97438 * 11 10 8 13 13 N 1.33838 * 120.00257 * 180.02562 * 11 10 8 14 14 C 1.32931 * 120.00126 * 180.02562 * 13 11 10 15 15 C 1.41209 * 126.37729 * 0.24799 * 14 13 11 16 16 C 1.34958 * 108.24117 * 180.20448 * 15 14 13 17 17 N 1.36456 * 108.94895 * 359.58426 * 16 15 14 18 18 C 1.46498 * 125.85531 * 180.30289 * 17 16 15 19 19 C 1.50700 * 109.47617 * 84.97053 * 18 17 16 20 20 H 1.08001 * 119.99600 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00301 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00075 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47364 * 59.99518 * 23 21 19 25 25 H 1.48501 * 109.46956 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46925 * 299.99294 * 23 21 19 27 27 N 1.37421 * 126.37783 * 179.97438 * 14 13 11 28 28 H 0.97002 * 126.36408 * 359.96003 * 27 14 13 29 29 H 1.09008 * 109.46636 * 300.00206 * 1 2 3 30 30 H 1.08997 * 109.47018 * 59.99281 * 1 2 3 31 31 H 1.08996 * 109.47582 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47146 * 240.00231 * 2 1 3 33 33 H 1.09002 * 109.46659 * 59.99933 * 3 2 1 34 34 H 1.09005 * 109.47620 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47138 * 300.00519 * 3 2 1 36 36 H 1.09004 * 109.46985 * 270.87210 * 6 5 4 37 37 H 1.08994 * 109.47243 * 30.87442 * 6 5 4 38 38 H 1.09000 * 109.46908 * 150.87438 * 6 5 4 39 39 H 1.08997 * 117.50187 * 359.97438 * 7 5 4 40 40 H 1.08997 * 117.50125 * 214.96573 * 7 5 4 41 41 H 0.97003 * 119.99987 * 43.62467 * 10 8 7 42 42 H 1.07997 * 125.88206 * 0.07582 * 15 14 13 43 43 H 1.08001 * 125.52559 * 179.85098 * 16 15 14 44 44 H 1.09003 * 109.47334 * 204.97683 * 18 17 16 45 45 H 1.09007 * 109.47027 * 324.97349 * 18 17 16 46 46 H 0.97006 * 119.99978 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 3.2289 -1.3865 0.9680 6 6 4.5011 -0.5373 1.0037 7 6 3.3145 -2.8108 1.5200 8 6 3.2030 -2.5804 0.0115 9 1 4.0923 -2.7606 -0.5925 10 7 1.9268 -2.9057 -0.6300 11 6 1.9122 -3.5649 -1.8055 12 8 2.9604 -3.8899 -2.3348 13 7 0.7463 -3.8617 -2.3918 14 6 0.7318 -4.5123 -3.5509 15 6 1.8591 -4.9567 -4.2760 16 6 1.4254 -5.5677 -5.3985 17 7 0.0613 -5.5414 -5.4185 18 6 -0.7926 -6.1066 -6.4662 19 6 -1.0182 -7.5717 -6.1946 20 1 -0.5706 -8.0353 -5.3279 21 6 -1.7959 -8.3201 -7.0524 22 7 -2.3413 -7.7553 -8.1075 23 14 -2.0761 -10.1359 -6.7153 24 1 -2.7389 -10.2980 -5.3964 25 1 -2.9416 -10.7087 -7.7774 26 1 -0.7710 -10.8444 -6.7040 27 7 -0.3831 -4.8823 -4.2641 28 1 -1.3060 -4.7177 -4.0150 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.1302 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 4.7199 -0.1684 0.0016 37 1 4.3558 0.3067 1.6779 38 1 5.3339 -1.1453 1.3570 39 1 2.4384 -3.2044 2.0352 40 1 4.2771 -3.1430 1.9086 41 1 1.0923 -2.6466 -0.2088 42 1 2.8908 -4.8278 -3.9838 43 1 2.0557 -6.0099 -6.1559 44 1 -1.7506 -5.5867 -6.4740 45 1 -0.3067 -5.9873 -7.4347 46 1 -2.8888 -8.2818 -8.7109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528986881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:02 Heat of formation + Delta-G solvation = 33.812584 kcal Electronic energy + Delta-G solvation = -27015.371866 eV Core-core repulsion = 23136.329158 eV Total energy + Delta-G solvation = -3879.042708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.26467 -40.98882 -39.68515 -36.98949 -35.91626 -34.60299 -34.20308 -32.71912 -32.48980 -32.07067 -29.41021 -28.33135 -27.92297 -25.15367 -23.94729 -22.79243 -22.61247 -22.34341 -21.36108 -21.02745 -19.02016 -18.66569 -17.97892 -17.61223 -16.73250 -16.58080 -16.39204 -16.11501 -16.03264 -15.66291 -15.48819 -15.39392 -14.57882 -14.48389 -14.34189 -14.14593 -14.03703 -13.80270 -13.64764 -13.50823 -13.14460 -13.11222 -13.02827 -12.89252 -12.72706 -12.63814 -12.30696 -12.17499 -11.97374 -11.61866 -11.28432 -11.22137 -10.99948 -10.76349 -10.71996 -10.50165 -9.93156 -9.48291 -8.53731 -8.20052 -6.55055 0.30831 0.60455 1.39989 1.42624 1.49528 1.66331 2.05794 2.31228 2.45819 2.86988 2.93523 3.01477 3.26280 3.59923 3.85559 3.93533 4.03391 4.04716 4.17419 4.27076 4.32510 4.43093 4.50016 4.62046 4.73367 4.78866 4.83221 4.85180 4.87401 4.89416 4.92506 4.97556 5.04033 5.06222 5.24005 5.26654 5.27484 5.32888 5.52134 5.71702 5.75104 5.93645 6.13777 6.31766 6.35295 6.59738 6.88329 6.96034 7.18702 8.10273 8.66970 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.002310 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.603678 B =12119.745345 C =12494.568057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.168 4.168 4 O -0.356 6.356 5 C 0.033 3.967 6 C -0.127 4.127 7 C -0.161 4.161 8 C 0.066 3.934 9 H 0.127 0.873 10 N -0.688 5.688 11 C 0.678 3.322 12 O -0.656 6.656 13 N -0.722 5.722 14 C 0.472 3.528 15 C -0.345 4.345 16 C 0.178 3.822 17 N -0.350 5.350 18 C 0.268 3.732 19 C -0.566 4.566 20 H 0.059 0.941 21 C 0.030 3.970 22 N -0.913 5.913 23 Si 0.962 3.038 24 H -0.276 1.276 25 H -0.280 1.280 26 H -0.268 1.268 27 N -0.466 5.466 28 H 0.451 0.549 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.402 0.598 42 H 0.173 0.827 43 H 0.223 0.777 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 13.012 12.540 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.225 4.225 4 O -0.275 6.275 5 C -0.009 4.009 6 C -0.185 4.185 7 C -0.200 4.200 8 C -0.042 4.042 9 H 0.144 0.856 10 N -0.340 5.340 11 C 0.377 3.623 12 O -0.541 6.541 13 N -0.487 5.487 14 C 0.219 3.781 15 C -0.378 4.378 16 C 0.033 3.967 17 N -0.135 5.135 18 C 0.151 3.849 19 C -0.604 4.604 20 H 0.077 0.923 21 C -0.172 4.172 22 N -0.551 5.551 23 Si 0.787 3.213 24 H -0.202 1.202 25 H -0.205 1.205 26 H -0.193 1.193 27 N -0.189 5.189 28 H 0.300 0.700 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.154 0.846 41 H 0.238 0.762 42 H 0.190 0.810 43 H 0.240 0.760 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.969 12.936 12.393 19.607 hybrid contribution -0.699 -1.038 -0.194 1.267 sum 7.270 11.898 12.199 18.526 Atomic orbital electron populations 1.21879 0.93219 1.02326 1.03083 1.22204 0.95125 0.93172 0.87620 1.22293 1.01853 0.95495 1.02908 1.87859 1.38083 1.66996 1.34580 1.22784 0.87496 0.87267 1.03349 1.21719 0.93867 1.00135 1.02740 1.23995 1.05285 0.95130 0.95592 1.22128 0.88443 1.02640 0.90985 0.85580 1.43972 1.08074 1.60268 1.21654 1.16826 0.85029 0.78541 0.81936 1.90693 1.37095 1.60263 1.66028 1.68067 1.29219 1.37683 1.13741 1.18898 0.84979 0.86254 0.88011 1.22294 1.01016 1.15555 0.98933 1.23342 0.81864 0.92791 0.98664 1.47858 1.05982 1.47679 1.12019 1.19728 0.89942 0.92522 0.82686 1.21587 1.33174 0.94464 1.11193 0.92266 1.25587 0.94402 1.02924 0.94298 1.69955 1.32689 1.38484 1.13931 0.85526 0.78541 0.79382 0.77817 1.20182 1.20475 1.19282 1.44417 1.08254 1.52284 1.13993 0.70022 0.91182 0.90415 0.93081 0.93271 0.91473 0.91997 0.91051 0.91917 0.90437 0.89348 0.88372 0.84605 0.76192 0.80955 0.76027 0.93881 0.91024 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.54 71.98 0.69 -2.31 16 2 C 0.08 1.67 2.41 30.59 0.07 1.74 16 3 C -0.17 -2.93 9.44 71.98 0.68 -2.25 16 4 O -0.36 -8.38 9.75 -148.98 -1.45 -9.83 16 5 C 0.03 0.70 2.44 -10.79 -0.03 0.68 16 6 C -0.13 -2.01 8.82 71.98 0.63 -1.37 16 7 C -0.16 -3.31 10.05 30.59 0.31 -3.00 16 8 C 0.07 1.75 5.70 45.00 0.26 2.01 16 9 H 0.13 3.65 7.40 -2.39 -0.02 3.64 16 10 N -0.69 -22.10 4.25 -458.32 -1.95 -24.05 16 11 C 0.68 26.98 8.47 179.35 1.52 28.50 16 12 O -0.66 -28.77 12.83 -4.80 -0.06 -28.83 16 13 N -0.72 -28.81 10.59 -322.54 -3.42 -32.23 16 14 C 0.47 18.34 8.07 133.95 1.08 19.42 16 15 C -0.35 -12.79 9.52 22.25 0.21 -12.58 16 16 C 0.18 5.75 11.45 83.22 0.95 6.70 16 17 N -0.35 -12.58 3.63 -350.83 -1.28 -13.86 16 18 C 0.27 10.89 6.19 85.63 0.53 11.42 16 19 C -0.57 -26.34 9.39 25.60 0.24 -26.09 16 20 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 21 C 0.03 1.45 5.46 84.65 0.46 1.91 16 22 N -0.91 -45.64 13.29 21.45 0.28 -45.35 16 23 Si 0.96 38.74 29.54 68.60 2.03 40.77 16 24 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 27 N -0.47 -16.45 7.38 -54.79 -0.40 -16.85 16 28 H 0.45 14.14 8.96 -213.28 -1.91 12.23 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.15 7.35 -2.39 -0.02 1.13 16 32 H 0.05 1.30 6.43 -2.39 -0.02 1.29 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.03 6.70 -2.38 -0.02 1.01 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.01 7.89 -2.38 -0.02 0.99 16 37 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 38 H 0.09 1.07 7.88 -2.39 -0.02 1.06 16 39 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.14 2.05 8.04 -2.39 -0.02 2.03 16 41 H 0.40 12.34 7.17 -92.71 -0.66 11.67 16 42 H 0.17 6.84 5.77 -2.91 -0.02 6.82 16 43 H 0.22 5.33 8.06 -2.91 -0.02 5.31 16 44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 46 H 0.27 13.07 8.31 -92.70 -0.77 12.30 16 Total: -1.00 -60.94 382.42 -0.21 -61.15 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: -1.57 Total: 44.31 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 7.61 Total: 24.77 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -6.76 Total: -132.34 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.51 Total: -38.66 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -60.94 -0.21 -61.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528986881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.958 kcal (2) G-P(sol) polarization free energy of solvation -60.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds