Wall clock time and date at job start Tue Mar 31 2020 12:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46751 * 2 1 4 4 H 1.08995 * 109.47505 * 55.00275 * 3 2 1 5 5 C 1.53002 * 109.46672 * 174.99733 * 3 2 1 6 6 N 1.46499 * 109.47453 * 294.99569 * 3 2 1 7 7 C 1.46494 * 120.00101 * 300.00655 * 6 3 2 8 8 C 1.34780 * 119.99512 * 120.00347 * 6 3 2 9 9 O 1.21366 * 120.00484 * 3.65018 * 8 6 3 10 10 C 1.49313 * 119.99389 * 183.37794 * 8 6 3 11 11 O 1.21386 * 120.00331 * 354.44247 * 10 8 6 12 12 N 1.34776 * 119.99797 * 174.45283 * 10 8 6 13 13 C 1.39197 * 119.99958 * 180.02562 * 12 10 8 14 14 C 1.36212 * 126.27246 * 359.67840 * 13 12 10 15 15 C 1.39694 * 107.85688 * 179.90915 * 14 13 12 16 16 C 1.50698 * 125.76917 * 180.14668 * 15 14 13 17 17 N 1.30844 * 108.46174 * 0.36682 * 15 14 13 18 18 N 1.35861 * 126.26890 * 180.02562 * 13 12 10 19 19 C 1.46495 * 126.09778 * 359.91751 * 18 13 12 20 20 C 1.50703 * 109.47012 * 90.00603 * 19 18 13 21 21 H 1.07996 * 119.99766 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99961 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00439 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99970 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46854 * 60.00762 * 24 22 20 26 26 H 1.48505 * 109.47378 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47450 * 300.00675 * 24 22 20 28 28 H 1.09007 * 109.47165 * 59.99961 * 1 2 3 29 29 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47777 * 299.99994 * 1 2 3 31 31 H 1.08999 * 109.47040 * 240.00022 * 2 1 3 32 32 H 1.08999 * 109.46935 * 119.99871 * 2 1 3 33 33 H 1.09005 * 109.46924 * 180.02562 * 5 3 2 34 34 H 1.08995 * 109.47674 * 299.99901 * 5 3 2 35 35 H 1.08996 * 109.47083 * 60.00453 * 5 3 2 36 36 H 1.09003 * 109.46934 * 263.99123 * 7 6 3 37 37 H 1.08998 * 109.47614 * 23.99192 * 7 6 3 38 38 H 1.08993 * 109.47324 * 143.99691 * 7 6 3 39 39 H 0.97008 * 120.00119 * 359.97438 * 12 10 8 40 40 H 1.08003 * 126.06908 * 0.02562 * 14 13 12 41 41 H 1.09006 * 109.46972 * 270.23666 * 16 15 14 42 42 H 1.09007 * 109.47398 * 30.23116 * 16 15 14 43 43 H 1.09004 * 109.47574 * 150.23426 * 16 15 14 44 44 H 1.09000 * 109.47001 * 210.00240 * 19 18 13 45 45 H 1.08997 * 109.47657 * 330.00199 * 19 18 13 46 46 H 0.96999 * 120.00331 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 1.6524 2.0975 -1.2518 7 6 2.1139 1.5590 -2.5337 8 6 0.8713 3.1955 -1.2241 9 8 0.5436 3.6804 -0.1609 10 6 0.4143 3.8189 -2.5015 11 8 0.8267 3.3993 -3.5633 12 7 -0.4560 4.8477 -2.4757 13 6 -0.8825 5.4285 -3.6667 14 6 -0.5001 5.0654 -4.9226 15 6 -1.1607 5.8982 -5.8290 16 6 -1.0328 5.8440 -7.3296 17 7 -1.9057 6.7363 -5.1547 18 7 -1.7514 6.4658 -3.7890 19 6 -2.4102 7.1741 -2.6889 20 6 -1.5515 8.3328 -2.2517 21 1 -0.6090 8.5223 -2.7438 22 6 -1.9691 9.1509 -1.2235 23 7 -3.1165 8.9199 -0.6239 24 14 -0.9043 10.5867 -0.6811 25 1 -0.7084 11.5165 -1.8223 26 1 -1.5722 11.3049 0.4340 27 1 0.4145 10.0800 -0.2235 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9280 2.4720 0.1263 34 1 3.8532 0.9570 1.0571 35 1 3.9994 0.9053 -0.7160 36 1 3.0083 2.0946 -2.8519 37 1 2.3455 0.4999 -2.4207 38 1 1.3313 1.6818 -3.2823 39 1 -0.7858 5.1829 -1.6272 40 1 0.1897 4.2731 -5.1731 41 1 -0.2178 6.4939 -7.6484 42 1 -0.8235 4.8201 -7.6397 43 1 -1.9643 6.1787 -7.7861 44 1 -3.3785 7.5458 -3.0243 45 1 -2.5534 6.4916 -1.8512 46 1 -3.4101 9.4953 0.0998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532998768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:30 Heat of formation + Delta-G solvation = 14.873459 kcal Electronic energy + Delta-G solvation = -27915.625387 eV Core-core repulsion = 24035.761417 eV Total energy + Delta-G solvation = -3879.863970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.28747 -40.34173 -38.64835 -37.12120 -34.96868 -33.84337 -33.10685 -32.06757 -30.30584 -29.26265 -28.51061 -27.17286 -26.05766 -25.34490 -23.81430 -22.84947 -21.55153 -20.14892 -19.71186 -19.11386 -17.55957 -17.20155 -16.81303 -16.41285 -16.26823 -15.73162 -14.94998 -14.79272 -14.44329 -14.26946 -14.18394 -14.04123 -13.65490 -13.47359 -13.11859 -12.97849 -12.79094 -12.63469 -12.53176 -12.41403 -12.07552 -12.03183 -11.86567 -11.56361 -11.45538 -11.32278 -11.28238 -11.07439 -10.90658 -10.83581 -10.52272 -10.31017 -9.83267 -9.80508 -9.29774 -8.90423 -8.67985 -7.97044 -7.55944 -6.29813 -4.38538 1.25907 2.08354 2.62634 3.14410 3.22753 3.22818 3.26397 3.31037 3.55684 3.73513 4.24135 4.29011 4.45803 4.71046 4.79671 4.97814 5.03649 5.11435 5.21679 5.29753 5.31660 5.44871 5.50532 5.53773 5.62574 5.69392 5.73901 5.84233 5.89615 5.99622 6.04415 6.08133 6.11556 6.13823 6.23391 6.35266 6.53616 6.82467 6.91022 7.01805 7.34933 7.46428 7.54504 7.65102 7.81459 7.84432 8.09627 8.56767 8.69636 9.29092 10.77595 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.003997 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.576013 B = 7003.833484 C = 8756.819212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C 0.130 3.870 4 H 0.105 0.895 5 C -0.161 4.161 6 N -0.579 5.579 7 C 0.062 3.938 8 C 0.513 3.487 9 O -0.511 6.511 10 C 0.513 3.487 11 O -0.493 6.493 12 N -0.607 5.607 13 C 0.294 3.706 14 C -0.287 4.287 15 C 0.049 3.951 16 C -0.062 4.062 17 N -0.278 5.278 18 N -0.341 5.341 19 C 0.256 3.744 20 C -0.543 4.543 21 H 0.064 0.936 22 C 0.069 3.931 23 N -0.889 5.889 24 Si 0.907 3.093 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.428 0.572 40 H 0.163 0.837 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 -18.492 -1.336 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.171 4.171 3 C 0.027 3.973 4 H 0.123 0.877 5 C -0.219 4.219 6 N -0.313 5.313 7 C -0.080 4.080 8 C 0.295 3.705 9 O -0.386 6.386 10 C 0.294 3.706 11 O -0.367 6.367 12 N -0.255 5.255 13 C 0.072 3.928 14 C -0.319 4.319 15 C -0.115 4.115 16 C -0.121 4.121 17 N -0.104 5.104 18 N -0.127 5.127 19 C 0.138 3.862 20 C -0.582 4.582 21 H 0.083 0.917 22 C -0.135 4.135 23 N -0.526 5.526 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.199 1.199 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.267 0.733 40 H 0.180 0.820 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.385 -17.443 -1.262 19.847 hybrid contribution 0.921 0.435 1.054 1.466 sum 10.306 -17.007 -0.208 19.887 Atomic orbital electron populations 1.21748 0.95211 1.01614 1.02425 1.21910 0.96860 0.95532 1.02762 1.21322 0.95458 0.93566 0.86941 0.87685 1.22128 0.94488 1.02820 1.02430 1.47687 1.48402 1.26677 1.08582 1.22404 1.02483 0.98496 0.84636 1.19809 0.80014 0.81627 0.89023 1.90814 1.55647 1.61033 1.31097 1.19927 0.79957 0.80784 0.89939 1.90596 1.54754 1.59982 1.31409 1.42345 1.42719 1.31530 1.08864 1.17985 0.96037 0.92144 0.86675 1.21271 1.12330 1.09646 0.88662 1.22015 0.97511 0.95310 0.96695 1.20029 1.02252 1.02177 0.87644 1.77364 1.24378 1.22523 0.86085 1.49591 1.33480 1.23530 1.06057 1.19682 0.94309 0.91896 0.80313 1.21273 1.06215 1.12332 1.18330 0.91739 1.24920 0.95272 0.97786 0.95566 1.69900 1.20033 1.39020 1.23658 0.86400 0.80244 0.81702 0.78296 1.19869 1.20851 1.19927 0.92765 0.92578 0.92384 0.91316 0.90512 0.91979 0.91155 0.92069 0.92104 0.91474 0.87365 0.73326 0.81977 0.91257 0.91098 0.91488 0.92365 0.93653 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.80 37.16 0.36 -0.98 16 2 C -0.13 -0.98 5.36 -26.73 -0.14 -1.13 16 3 C 0.13 1.22 2.63 -67.93 -0.18 1.04 16 4 H 0.11 1.18 6.90 -51.93 -0.36 0.82 16 5 C -0.16 -1.21 9.19 37.16 0.34 -0.87 16 6 N -0.58 -6.56 2.21 -174.50 -0.39 -6.95 16 7 C 0.06 0.58 8.57 59.84 0.51 1.09 16 8 C 0.51 7.60 7.73 -11.65 -0.09 7.51 16 9 O -0.51 -8.80 15.82 5.48 0.09 -8.71 16 10 C 0.51 8.38 7.73 -11.65 -0.09 8.28 16 11 O -0.49 -7.92 10.26 5.47 0.06 -7.87 16 12 N -0.61 -11.37 5.40 -11.80 -0.06 -11.44 16 13 C 0.29 6.21 7.68 -152.85 -1.17 5.03 16 14 C -0.29 -5.64 9.58 -39.77 -0.38 -6.02 16 15 C 0.05 0.97 7.20 -82.47 -0.59 0.37 16 16 C -0.06 -0.88 10.44 36.00 0.38 -0.51 16 17 N -0.28 -6.41 12.56 33.64 0.42 -5.99 16 18 N -0.34 -8.05 3.62 -61.47 -0.22 -8.27 16 19 C 0.26 6.54 6.02 -5.19 -0.03 6.50 16 20 C -0.54 -14.98 9.39 -34.44 -0.32 -15.30 16 21 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 23 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 24 Si 0.91 21.32 29.54 -169.99 -5.02 16.29 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.05 0.56 7.75 -51.92 -0.40 0.16 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.45 6.50 -51.93 -0.34 0.11 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.46 6.36 -51.93 -0.33 0.13 16 38 H 0.11 1.19 5.36 -51.94 -0.28 0.91 16 39 H 0.43 8.16 7.47 -40.82 -0.31 7.86 16 40 H 0.16 2.95 5.83 -52.48 -0.31 2.64 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.05 1.14 7.52 -51.93 -0.39 0.75 16 46 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -31.06 379.72 -7.06 -38.12 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.88 Total: 6.50 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.51 Total: 6.81 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.49 Total: -56.87 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.14 Total: -16.58 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.06 -7.06 -38.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532998768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.995 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds