Wall clock time and date at job start Tue Mar 31 2020 12:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46751 * 2 1 4 4 H 1.08995 * 109.47505 * 55.00275 * 3 2 1 5 5 C 1.53002 * 109.46672 * 174.99733 * 3 2 1 6 6 N 1.46499 * 109.47453 * 294.99569 * 3 2 1 7 7 C 1.46494 * 120.00101 * 300.00655 * 6 3 2 8 8 C 1.34780 * 119.99512 * 120.00347 * 6 3 2 9 9 O 1.21366 * 120.00484 * 3.65018 * 8 6 3 10 10 C 1.49313 * 119.99389 * 183.37794 * 8 6 3 11 11 O 1.21386 * 120.00331 * 354.44247 * 10 8 6 12 12 N 1.34776 * 119.99797 * 174.45283 * 10 8 6 13 13 C 1.39197 * 119.99958 * 180.02562 * 12 10 8 14 14 C 1.36212 * 126.27246 * 359.67840 * 13 12 10 15 15 C 1.39694 * 107.85688 * 179.90915 * 14 13 12 16 16 C 1.50698 * 125.76917 * 180.14668 * 15 14 13 17 17 N 1.30844 * 108.46174 * 0.36682 * 15 14 13 18 18 N 1.35861 * 126.26890 * 180.02562 * 13 12 10 19 19 C 1.46495 * 126.09778 * 359.91751 * 18 13 12 20 20 C 1.50703 * 109.47012 * 90.00603 * 19 18 13 21 21 H 1.07996 * 119.99766 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99961 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00439 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99970 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46854 * 60.00762 * 24 22 20 26 26 H 1.48505 * 109.47378 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47450 * 300.00675 * 24 22 20 28 28 H 1.09007 * 109.47165 * 59.99961 * 1 2 3 29 29 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47777 * 299.99994 * 1 2 3 31 31 H 1.08999 * 109.47040 * 240.00022 * 2 1 3 32 32 H 1.08999 * 109.46935 * 119.99871 * 2 1 3 33 33 H 1.09005 * 109.46924 * 180.02562 * 5 3 2 34 34 H 1.08995 * 109.47674 * 299.99901 * 5 3 2 35 35 H 1.08996 * 109.47083 * 60.00453 * 5 3 2 36 36 H 1.09003 * 109.46934 * 263.99123 * 7 6 3 37 37 H 1.08998 * 109.47614 * 23.99192 * 7 6 3 38 38 H 1.08993 * 109.47324 * 143.99691 * 7 6 3 39 39 H 0.97008 * 120.00119 * 359.97438 * 12 10 8 40 40 H 1.08003 * 126.06908 * 0.02562 * 14 13 12 41 41 H 1.09006 * 109.46972 * 270.23666 * 16 15 14 42 42 H 1.09007 * 109.47398 * 30.23116 * 16 15 14 43 43 H 1.09004 * 109.47574 * 150.23426 * 16 15 14 44 44 H 1.09000 * 109.47001 * 210.00240 * 19 18 13 45 45 H 1.08997 * 109.47657 * 330.00199 * 19 18 13 46 46 H 0.96999 * 120.00331 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 1.6524 2.0975 -1.2518 7 6 2.1139 1.5590 -2.5337 8 6 0.8713 3.1955 -1.2241 9 8 0.5436 3.6804 -0.1609 10 6 0.4143 3.8189 -2.5015 11 8 0.8267 3.3993 -3.5633 12 7 -0.4560 4.8477 -2.4757 13 6 -0.8825 5.4285 -3.6667 14 6 -0.5001 5.0654 -4.9226 15 6 -1.1607 5.8982 -5.8290 16 6 -1.0328 5.8440 -7.3296 17 7 -1.9057 6.7363 -5.1547 18 7 -1.7514 6.4658 -3.7890 19 6 -2.4102 7.1741 -2.6889 20 6 -1.5515 8.3328 -2.2517 21 1 -0.6090 8.5223 -2.7438 22 6 -1.9691 9.1509 -1.2235 23 7 -3.1165 8.9199 -0.6239 24 14 -0.9043 10.5867 -0.6811 25 1 -0.7084 11.5165 -1.8223 26 1 -1.5722 11.3049 0.4340 27 1 0.4145 10.0800 -0.2235 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9280 2.4720 0.1263 34 1 3.8532 0.9570 1.0571 35 1 3.9994 0.9053 -0.7160 36 1 3.0083 2.0946 -2.8519 37 1 2.3455 0.4999 -2.4207 38 1 1.3313 1.6818 -3.2823 39 1 -0.7858 5.1829 -1.6272 40 1 0.1897 4.2731 -5.1731 41 1 -0.2178 6.4939 -7.6484 42 1 -0.8235 4.8201 -7.6397 43 1 -1.9643 6.1787 -7.7861 44 1 -3.3785 7.5458 -3.0243 45 1 -2.5534 6.4916 -1.8512 46 1 -3.4101 9.4953 0.0998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532998768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:29 Heat of formation + Delta-G solvation = -3.984411 kcal Electronic energy + Delta-G solvation = -27916.443126 eV Core-core repulsion = 24035.761417 eV Total energy + Delta-G solvation = -3880.681709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.69770 -41.71251 -39.90820 -38.15001 -36.40770 -35.72764 -34.06966 -33.80272 -31.03915 -30.83441 -30.07964 -28.09287 -27.82227 -26.50802 -24.85218 -24.48406 -22.79188 -21.47982 -21.06163 -20.28563 -18.98668 -18.76189 -18.35835 -17.95485 -17.49213 -17.00806 -16.53856 -16.25552 -15.87970 -15.51951 -15.48572 -14.88623 -14.62777 -14.53810 -14.43927 -14.31435 -14.11201 -13.95859 -13.60693 -13.54083 -13.37119 -13.16700 -13.12723 -12.91782 -12.72883 -12.70593 -12.50099 -12.30876 -12.13633 -12.06162 -11.95228 -11.75525 -11.61800 -11.40007 -10.79056 -10.52823 -9.87596 -9.68285 -9.17410 -8.39368 -6.57243 -0.04491 0.80220 1.09426 1.34404 1.35833 1.44624 1.76184 1.81524 2.09669 2.26526 2.35346 2.91271 3.00193 3.72765 3.79061 4.03235 4.13258 4.13469 4.24252 4.45335 4.46275 4.55376 4.61328 4.65944 4.69457 4.75027 4.80375 4.88452 4.90100 4.92857 4.96734 5.03108 5.07572 5.16309 5.18734 5.20503 5.27327 5.35570 5.42004 5.47064 5.72685 5.81269 5.93400 5.96549 6.08949 6.42707 6.56681 6.71194 6.95498 7.14665 8.67325 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.003997 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.576013 B = 7003.833484 C = 8756.819212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.122 3.878 4 H 0.082 0.918 5 C -0.155 4.155 6 N -0.564 5.564 7 C 0.058 3.942 8 C 0.512 3.488 9 O -0.545 6.545 10 C 0.514 3.486 11 O -0.487 6.487 12 N -0.617 5.617 13 C 0.288 3.712 14 C -0.289 4.289 15 C 0.060 3.940 16 C -0.061 4.061 17 N -0.323 5.323 18 N -0.368 5.368 19 C 0.273 3.727 20 C -0.559 4.559 21 H 0.049 0.951 22 C 0.026 3.974 23 N -0.914 5.914 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.423 0.577 40 H 0.181 0.819 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 -20.398 -1.945 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.021 3.979 4 H 0.100 0.900 5 C -0.212 4.212 6 N -0.296 5.296 7 C -0.083 4.083 8 C 0.293 3.707 9 O -0.423 6.423 10 C 0.297 3.703 11 O -0.360 6.360 12 N -0.264 5.264 13 C 0.066 3.934 14 C -0.320 4.320 15 C -0.105 4.105 16 C -0.119 4.119 17 N -0.149 5.149 18 N -0.154 5.154 19 C 0.154 3.846 20 C -0.597 4.597 21 H 0.067 0.933 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.793 3.207 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.195 1.195 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.260 0.740 40 H 0.198 0.802 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.815 -19.412 -1.897 22.804 hybrid contribution 0.231 0.861 1.173 1.474 sum 12.046 -18.551 -0.723 22.131 Atomic orbital electron populations 1.21762 0.96583 1.02089 1.00727 1.21905 0.95498 0.94049 1.04754 1.21580 0.96944 0.94348 0.85066 0.89969 1.22100 0.92493 1.02328 1.04309 1.47879 1.46334 1.25052 1.10349 1.22527 1.01952 1.00592 0.83197 1.19574 0.80802 0.82581 0.87721 1.90802 1.57435 1.62373 1.31661 1.20324 0.79161 0.80023 0.90831 1.90582 1.54318 1.59525 1.31609 1.42512 1.43623 1.32335 1.07963 1.18406 0.95396 0.91481 0.88096 1.21559 1.12474 1.09995 0.87992 1.22933 0.95178 0.93325 0.99087 1.20258 1.03354 1.04602 0.83679 1.77322 1.26735 1.24792 0.86003 1.49348 1.35105 1.24882 1.06023 1.19194 0.93047 0.91495 0.80867 1.21392 1.05982 1.13513 1.18855 0.93266 1.25722 0.96430 1.00117 0.95322 1.69983 1.21220 1.40010 1.23974 0.85433 0.78683 0.78463 0.78105 1.19690 1.19474 1.19469 0.94784 0.90982 0.93837 0.89483 0.88226 0.93663 0.89113 0.90323 0.91490 0.88013 0.88791 0.73952 0.80229 0.89562 0.88073 0.90734 0.95072 0.94193 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.80 71.98 0.71 -1.82 16 2 C -0.12 -1.49 5.36 30.59 0.16 -1.32 16 3 C 0.12 2.10 2.63 44.99 0.12 2.21 16 4 H 0.08 1.83 6.90 -2.39 -0.02 1.82 16 5 C -0.15 -1.92 9.19 71.98 0.66 -1.25 16 6 N -0.56 -12.11 2.21 -824.36 -1.83 -13.94 16 7 C 0.06 0.95 8.57 127.77 1.09 2.05 16 8 C 0.51 15.35 7.73 87.23 0.67 16.02 16 9 O -0.54 -19.53 15.82 -3.30 -0.05 -19.58 16 10 C 0.51 16.99 7.73 87.23 0.67 17.67 16 11 O -0.49 -15.24 10.26 -3.36 -0.03 -15.28 16 12 N -0.62 -24.02 5.40 -309.58 -1.67 -25.69 16 13 C 0.29 12.49 7.68 131.25 1.01 13.49 16 14 C -0.29 -11.20 9.58 22.15 0.21 -10.98 16 15 C 0.06 2.31 7.20 43.06 0.31 2.62 16 16 C -0.06 -1.57 10.44 71.24 0.74 -0.82 16 17 N -0.32 -15.27 12.56 -47.49 -0.60 -15.87 16 18 N -0.37 -18.12 3.62 -348.40 -1.26 -19.38 16 19 C 0.27 14.77 6.02 85.63 0.52 15.28 16 20 C -0.56 -32.05 9.39 25.60 0.24 -31.81 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 22 C 0.03 1.44 5.46 84.65 0.46 1.90 16 23 N -0.91 -52.54 13.29 21.44 0.28 -52.25 16 24 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 H 0.03 0.68 7.75 -2.38 -0.02 0.66 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.76 6.50 -2.39 -0.02 0.75 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 0.72 7.67 -2.39 -0.02 0.70 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 0.99 6.36 -2.39 -0.02 0.98 16 38 H 0.09 1.88 5.36 -2.48 -0.01 1.87 16 39 H 0.42 17.20 7.47 -92.70 -0.69 16.51 16 40 H 0.18 6.23 5.83 -2.91 -0.02 6.21 16 41 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.04 2.16 7.52 -2.39 -0.02 2.14 16 46 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -69.99 379.72 4.76 -65.22 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.31 Total: 27.36 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 7.58 Total: 23.24 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.07 Total: -127.13 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.09 Total: -34.86 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.99 4.76 -65.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532998768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.240 kcal (2) G-P(sol) polarization free energy of solvation -69.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds