Wall clock time and date at job start Tue Mar 31 2020 12:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47360 * 2 1 4 4 H 1.08995 * 109.47457 * 305.00260 * 3 2 1 5 5 C 1.53006 * 109.47211 * 184.99815 * 3 2 1 6 6 N 1.46510 * 109.47133 * 65.00279 * 3 2 1 7 7 C 1.46496 * 119.99718 * 59.99496 * 6 3 2 8 8 C 1.34771 * 119.99811 * 239.99988 * 6 3 2 9 9 O 1.21365 * 120.00161 * 356.41923 * 8 6 3 10 10 C 1.49312 * 119.99812 * 176.41809 * 8 6 3 11 11 O 1.21395 * 119.99890 * 5.92388 * 10 8 6 12 12 N 1.34770 * 119.99972 * 185.91856 * 10 8 6 13 13 C 1.39194 * 120.00086 * 179.97438 * 12 10 8 14 14 C 1.36217 * 126.27040 * 359.69695 * 13 12 10 15 15 C 1.39697 * 107.86017 * 179.84386 * 14 13 12 16 16 C 1.50702 * 125.77309 * 180.12826 * 15 14 13 17 17 N 1.30847 * 108.45580 * 0.42150 * 15 14 13 18 18 N 1.35854 * 126.27588 * 180.02562 * 13 12 10 19 19 C 1.46504 * 126.09658 * 359.97438 * 18 13 12 20 20 C 1.50693 * 109.46680 * 90.00184 * 19 18 13 21 21 H 1.07999 * 120.00334 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99714 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00047 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99988 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47126 * 89.99673 * 24 22 20 26 26 H 1.48498 * 109.46912 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47175 * 330.00107 * 24 22 20 28 28 H 1.09002 * 109.46863 * 299.99590 * 1 2 3 29 29 H 1.08999 * 109.46860 * 59.99484 * 1 2 3 30 30 H 1.09001 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46860 * 120.00516 * 2 1 3 32 32 H 1.09002 * 109.46863 * 240.00410 * 2 1 3 33 33 H 1.09003 * 109.46808 * 60.00421 * 5 3 2 34 34 H 1.09000 * 109.46564 * 180.02562 * 5 3 2 35 35 H 1.08995 * 109.47273 * 300.00557 * 5 3 2 36 36 H 1.09004 * 109.47170 * 95.99134 * 7 6 3 37 37 H 1.08999 * 109.47024 * 215.98507 * 7 6 3 38 38 H 1.09002 * 109.47766 * 335.99367 * 7 6 3 39 39 H 0.97000 * 120.00447 * 0.02562 * 12 10 8 40 40 H 1.08005 * 126.07097 * 359.95952 * 14 13 12 41 41 H 1.08994 * 109.46924 * 270.31997 * 16 15 14 42 42 H 1.09000 * 109.47045 * 30.32003 * 16 15 14 43 43 H 1.08995 * 109.47081 * 150.31512 * 16 15 14 44 44 H 1.08994 * 109.46840 * 210.00537 * 19 18 13 45 45 H 1.09003 * 109.47072 * 330.00468 * 19 18 13 46 46 H 0.97008 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 2.1140 1.5587 2.5337 8 6 0.8715 3.1954 1.2242 9 8 0.5427 3.6796 0.1610 10 6 0.4107 3.8161 2.5017 11 8 0.8252 3.3986 3.5635 12 7 -0.4653 4.8400 2.4758 13 6 -0.8952 5.4183 3.6666 14 6 -0.5202 5.0495 4.9231 15 6 -1.1776 5.8852 5.8292 16 6 -1.0509 5.8304 7.3299 17 7 -1.9267 6.7195 5.1548 18 7 -1.7706 6.4500 3.7891 19 6 -2.4325 7.1555 2.6889 20 6 -3.7386 6.4750 2.3695 21 1 -4.0451 5.6043 2.9302 22 6 -4.5422 6.9638 1.3614 23 7 -4.1691 8.0243 0.6789 24 14 -6.1615 6.1207 0.9659 25 1 -7.2455 6.7223 1.7834 26 1 -6.4724 6.2972 -0.4754 27 1 -6.0540 4.6723 1.2755 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8532 0.9569 -1.0571 34 1 3.9282 2.4719 -0.1252 35 1 3.9995 0.9051 0.7161 36 1 3.0086 2.0940 2.8519 37 1 1.3314 1.6819 3.2824 38 1 2.3453 0.4996 2.4207 39 1 -0.7967 5.1735 1.6273 40 1 0.1653 4.2535 5.1743 41 1 -1.8011 5.1504 7.7332 42 1 -0.0562 5.4744 7.5978 43 1 -1.2038 6.8270 7.7440 44 1 -2.6228 8.1880 2.9817 45 1 -1.7900 7.1400 1.8085 46 1 -4.7344 8.3681 -0.0306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532998769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:33 Heat of formation + Delta-G solvation = 14.712899 kcal Electronic energy + Delta-G solvation = -27950.676112 eV Core-core repulsion = 24070.805180 eV Total energy + Delta-G solvation = -3879.870932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28668 -40.34085 -38.64601 -37.11802 -34.96762 -33.84573 -33.09854 -32.07034 -30.29611 -29.26401 -28.51081 -27.17129 -26.06128 -25.34441 -23.79811 -22.85134 -21.54696 -20.14615 -19.71108 -19.11307 -17.55889 -17.20131 -16.82762 -16.37531 -16.29764 -15.72758 -14.95000 -14.79431 -14.43620 -14.26159 -14.17752 -14.03982 -13.64366 -13.46805 -13.11179 -12.98038 -12.78936 -12.63456 -12.54059 -12.43878 -12.06395 -12.00850 -11.85756 -11.56329 -11.43691 -11.33583 -11.26412 -11.06856 -10.89328 -10.86306 -10.51839 -10.31824 -9.82849 -9.79741 -9.29835 -8.90393 -8.69102 -7.96964 -7.55909 -6.30555 -4.39229 1.25924 2.08564 2.62561 3.14615 3.20069 3.22694 3.26394 3.31052 3.55610 3.73605 4.23969 4.28452 4.46561 4.71981 4.81251 4.98235 5.02966 5.11983 5.22752 5.29719 5.32718 5.45198 5.51154 5.53735 5.63531 5.72007 5.75370 5.83985 5.90547 5.99626 6.07892 6.08492 6.11866 6.13896 6.23544 6.35417 6.53697 6.82675 6.91204 7.01838 7.34961 7.46445 7.54410 7.64656 7.80999 7.84301 8.09574 8.56722 8.69332 9.28373 10.76874 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.004183 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.055696 B = 6691.417494 C = 8602.644616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.130 3.870 4 H 0.105 0.895 5 C -0.160 4.160 6 N -0.579 5.579 7 C 0.062 3.938 8 C 0.514 3.486 9 O -0.512 6.512 10 C 0.512 3.488 11 O -0.493 6.493 12 N -0.607 5.607 13 C 0.294 3.706 14 C -0.287 4.287 15 C 0.049 3.951 16 C -0.062 4.062 17 N -0.278 5.278 18 N -0.341 5.341 19 C 0.255 3.745 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.888 5.888 24 Si 0.907 3.093 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.428 0.572 40 H 0.163 0.837 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.501 -14.912 1.117 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C 0.027 3.973 4 H 0.123 0.877 5 C -0.218 4.218 6 N -0.313 5.313 7 C -0.080 4.080 8 C 0.296 3.704 9 O -0.387 6.387 10 C 0.294 3.706 11 O -0.367 6.367 12 N -0.254 5.254 13 C 0.072 3.928 14 C -0.319 4.319 15 C -0.115 4.115 16 C -0.121 4.121 17 N -0.104 5.104 18 N -0.127 5.127 19 C 0.137 3.863 20 C -0.581 4.581 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.267 0.733 40 H 0.180 0.820 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.699 -13.795 1.040 19.469 hybrid contribution -0.577 -0.813 -0.972 1.393 sum 13.121 -14.608 0.068 19.636 Atomic orbital electron populations 1.21750 0.95132 1.01663 1.02514 1.21909 0.96912 0.95493 1.02738 1.21327 0.95410 0.93625 0.86929 0.87681 1.22126 0.94495 1.02747 1.02445 1.47686 1.48405 1.26636 1.08591 1.22406 1.02441 0.98522 0.84657 1.19802 0.79925 0.81695 0.89012 1.90808 1.55562 1.61210 1.31103 1.19927 0.80051 0.80697 0.89944 1.90599 1.55118 1.59625 1.31406 1.42340 1.42192 1.32047 1.08866 1.17982 0.95705 0.92444 0.86702 1.21273 1.13027 1.08995 0.88619 1.22017 0.97094 0.95717 0.96701 1.20026 1.02038 1.02392 0.87642 1.77364 1.22977 1.23945 0.86079 1.49589 1.32222 1.24762 1.06079 1.19691 0.92570 0.93713 0.80281 1.21310 1.03865 1.14390 1.18527 0.91692 1.24929 0.98540 0.94843 0.95277 1.69914 1.38271 1.22358 1.22019 0.86343 0.82815 0.79874 0.77610 1.20205 1.20791 1.19694 0.92709 0.92362 0.92564 0.91328 0.90522 0.91150 0.92027 0.92074 0.92114 0.87356 0.91460 0.73327 0.81979 0.91257 0.91098 0.91489 0.92367 0.93614 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.80 37.16 0.36 -1.09 16 2 C -0.13 -1.02 5.36 -26.74 -0.14 -1.17 16 3 C 0.13 1.22 2.63 -67.93 -0.18 1.04 16 4 H 0.11 1.18 6.90 -51.93 -0.36 0.82 16 5 C -0.16 -1.18 9.19 37.16 0.34 -0.84 16 6 N -0.58 -6.58 2.21 -174.49 -0.39 -6.97 16 7 C 0.06 0.58 8.57 59.84 0.51 1.10 16 8 C 0.51 7.60 7.73 -11.65 -0.09 7.51 16 9 O -0.51 -8.77 15.82 5.48 0.09 -8.68 16 10 C 0.51 8.37 7.73 -11.65 -0.09 8.28 16 11 O -0.49 -7.93 10.26 5.46 0.06 -7.87 16 12 N -0.61 -11.37 5.40 -11.80 -0.06 -11.43 16 13 C 0.29 6.21 7.68 -152.86 -1.17 5.04 16 14 C -0.29 -5.65 9.58 -39.76 -0.38 -6.03 16 15 C 0.05 0.97 7.20 -82.47 -0.59 0.37 16 16 C -0.06 -0.88 10.44 36.01 0.38 -0.51 16 17 N -0.28 -6.41 12.56 33.64 0.42 -5.99 16 18 N -0.34 -8.05 3.62 -61.47 -0.22 -8.27 16 19 C 0.25 6.52 6.02 -5.19 -0.03 6.49 16 20 C -0.54 -14.90 9.39 -34.44 -0.32 -15.22 16 21 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 23 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 24 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.47 6.50 -51.93 -0.34 0.13 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 1.21 5.35 -51.94 -0.28 0.94 16 38 H 0.07 0.47 6.36 -51.93 -0.33 0.14 16 39 H 0.43 8.16 7.47 -40.82 -0.31 7.85 16 40 H 0.16 2.95 5.83 -52.48 -0.31 2.64 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.05 1.16 7.52 -51.93 -0.39 0.77 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -30.97 379.72 -7.06 -38.03 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.88 Total: 6.71 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.51 Total: 6.74 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.49 Total: -56.83 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.14 Total: -16.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.97 -7.06 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532998769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.739 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds