Wall clock time and date at job start Tue Mar 31 2020 12:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47360 * 2 1 4 4 H 1.08995 * 109.47457 * 305.00260 * 3 2 1 5 5 C 1.53006 * 109.47211 * 184.99815 * 3 2 1 6 6 N 1.46510 * 109.47133 * 65.00279 * 3 2 1 7 7 C 1.46496 * 119.99718 * 59.99496 * 6 3 2 8 8 C 1.34771 * 119.99811 * 239.99988 * 6 3 2 9 9 O 1.21365 * 120.00161 * 356.41923 * 8 6 3 10 10 C 1.49312 * 119.99812 * 176.41809 * 8 6 3 11 11 O 1.21395 * 119.99890 * 5.92388 * 10 8 6 12 12 N 1.34770 * 119.99972 * 185.91856 * 10 8 6 13 13 C 1.39194 * 120.00086 * 179.97438 * 12 10 8 14 14 C 1.36217 * 126.27040 * 359.69695 * 13 12 10 15 15 C 1.39697 * 107.86017 * 179.84386 * 14 13 12 16 16 C 1.50702 * 125.77309 * 180.12826 * 15 14 13 17 17 N 1.30847 * 108.45580 * 0.42150 * 15 14 13 18 18 N 1.35854 * 126.27588 * 180.02562 * 13 12 10 19 19 C 1.46504 * 126.09658 * 359.97438 * 18 13 12 20 20 C 1.50693 * 109.46680 * 90.00184 * 19 18 13 21 21 H 1.07999 * 120.00334 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99714 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00047 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99988 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47126 * 89.99673 * 24 22 20 26 26 H 1.48498 * 109.46912 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47175 * 330.00107 * 24 22 20 28 28 H 1.09002 * 109.46863 * 299.99590 * 1 2 3 29 29 H 1.08999 * 109.46860 * 59.99484 * 1 2 3 30 30 H 1.09001 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46860 * 120.00516 * 2 1 3 32 32 H 1.09002 * 109.46863 * 240.00410 * 2 1 3 33 33 H 1.09003 * 109.46808 * 60.00421 * 5 3 2 34 34 H 1.09000 * 109.46564 * 180.02562 * 5 3 2 35 35 H 1.08995 * 109.47273 * 300.00557 * 5 3 2 36 36 H 1.09004 * 109.47170 * 95.99134 * 7 6 3 37 37 H 1.08999 * 109.47024 * 215.98507 * 7 6 3 38 38 H 1.09002 * 109.47766 * 335.99367 * 7 6 3 39 39 H 0.97000 * 120.00447 * 0.02562 * 12 10 8 40 40 H 1.08005 * 126.07097 * 359.95952 * 14 13 12 41 41 H 1.08994 * 109.46924 * 270.31997 * 16 15 14 42 42 H 1.09000 * 109.47045 * 30.32003 * 16 15 14 43 43 H 1.08995 * 109.47081 * 150.31512 * 16 15 14 44 44 H 1.08994 * 109.46840 * 210.00537 * 19 18 13 45 45 H 1.09003 * 109.47072 * 330.00468 * 19 18 13 46 46 H 0.97008 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 2.1140 1.5587 2.5337 8 6 0.8715 3.1954 1.2242 9 8 0.5427 3.6796 0.1610 10 6 0.4107 3.8161 2.5017 11 8 0.8252 3.3986 3.5635 12 7 -0.4653 4.8400 2.4758 13 6 -0.8952 5.4183 3.6666 14 6 -0.5202 5.0495 4.9231 15 6 -1.1776 5.8852 5.8292 16 6 -1.0509 5.8304 7.3299 17 7 -1.9267 6.7195 5.1548 18 7 -1.7706 6.4500 3.7891 19 6 -2.4325 7.1555 2.6889 20 6 -3.7386 6.4750 2.3695 21 1 -4.0451 5.6043 2.9302 22 6 -4.5422 6.9638 1.3614 23 7 -4.1691 8.0243 0.6789 24 14 -6.1615 6.1207 0.9659 25 1 -7.2455 6.7223 1.7834 26 1 -6.4724 6.2972 -0.4754 27 1 -6.0540 4.6723 1.2755 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8532 0.9569 -1.0571 34 1 3.9282 2.4719 -0.1252 35 1 3.9995 0.9051 0.7161 36 1 3.0086 2.0940 2.8519 37 1 1.3314 1.6819 3.2824 38 1 2.3453 0.4996 2.4207 39 1 -0.7967 5.1735 1.6273 40 1 0.1653 4.2535 5.1743 41 1 -1.8011 5.1504 7.7332 42 1 -0.0562 5.4744 7.5978 43 1 -1.2038 6.8270 7.7440 44 1 -2.6228 8.1880 2.9817 45 1 -1.7900 7.1400 1.8085 46 1 -4.7344 8.3681 -0.0306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532998769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:32 Heat of formation + Delta-G solvation = -4.071704 kcal Electronic energy + Delta-G solvation = -27951.490673 eV Core-core repulsion = 24070.805180 eV Total energy + Delta-G solvation = -3880.685494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.69713 -41.71171 -39.90655 -38.14874 -36.40813 -35.72876 -34.07254 -33.80397 -31.04134 -30.83558 -30.07959 -28.09214 -27.82400 -26.50583 -24.85362 -24.48790 -22.79336 -21.48048 -21.06246 -20.28564 -18.98440 -18.77037 -18.36051 -17.94277 -17.50321 -17.00637 -16.52752 -16.26908 -15.87274 -15.52715 -15.47795 -14.89141 -14.63410 -14.52677 -14.45399 -14.31081 -14.11244 -13.96241 -13.66881 -13.49897 -13.31897 -13.16314 -13.14026 -12.94165 -12.73615 -12.71115 -12.48795 -12.32600 -12.13943 -12.05554 -11.95629 -11.74390 -11.62092 -11.40033 -10.79409 -10.52948 -9.87611 -9.68031 -9.17463 -8.39572 -6.57459 -0.04454 0.81208 1.08375 1.34164 1.34659 1.45754 1.76355 1.81647 2.09784 2.26435 2.35160 2.91070 3.00234 3.72575 3.79019 4.03137 4.12922 4.13301 4.24096 4.45077 4.46315 4.55132 4.61468 4.65941 4.69083 4.74934 4.80447 4.88771 4.90065 4.92936 4.96501 5.02811 5.06663 5.16229 5.18621 5.20367 5.27707 5.35096 5.41814 5.47105 5.72554 5.81311 5.93390 5.96563 6.08922 6.42774 6.56751 6.71188 6.95469 7.14515 8.67352 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.004183 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.055696 B = 6691.417494 C = 8602.644616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C 0.122 3.878 4 H 0.082 0.918 5 C -0.153 4.153 6 N -0.564 5.564 7 C 0.058 3.942 8 C 0.512 3.488 9 O -0.545 6.545 10 C 0.514 3.486 11 O -0.487 6.487 12 N -0.617 5.617 13 C 0.288 3.712 14 C -0.289 4.289 15 C 0.060 3.940 16 C -0.060 4.060 17 N -0.323 5.323 18 N -0.368 5.368 19 C 0.272 3.728 20 C -0.558 4.558 21 H 0.049 0.951 22 C 0.025 3.975 23 N -0.915 5.915 24 Si 0.971 3.029 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.423 0.577 40 H 0.181 0.819 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.809 -17.747 1.774 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.021 3.979 4 H 0.100 0.900 5 C -0.211 4.211 6 N -0.296 5.296 7 C -0.083 4.083 8 C 0.293 3.707 9 O -0.423 6.423 10 C 0.296 3.704 11 O -0.360 6.360 12 N -0.264 5.264 13 C 0.066 3.934 14 C -0.320 4.320 15 C -0.105 4.105 16 C -0.119 4.119 17 N -0.149 5.149 18 N -0.154 5.154 19 C 0.153 3.847 20 C -0.596 4.596 21 H 0.068 0.932 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.794 3.206 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.260 0.740 40 H 0.198 0.802 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.060 -16.679 1.721 22.538 hybrid contribution -0.861 -0.037 -1.111 1.406 sum 14.199 -16.716 0.610 21.941 Atomic orbital electron populations 1.21765 0.96781 1.02034 1.00659 1.21906 0.95290 0.94233 1.04774 1.21584 0.97062 0.94234 0.85057 0.89955 1.22094 0.92287 1.02437 1.04300 1.47881 1.46364 1.25019 1.10354 1.22527 1.01958 1.00609 0.83171 1.19566 0.80717 0.82659 0.87718 1.90797 1.57322 1.62519 1.31641 1.20327 0.79256 0.79933 0.90845 1.90585 1.54698 1.59143 1.31611 1.42509 1.43096 1.32861 1.07963 1.18405 0.95023 0.91825 0.88128 1.21562 1.13191 1.09336 0.87950 1.22936 0.94756 0.93739 0.99092 1.20255 1.04399 1.03560 0.83671 1.77321 1.25349 1.26185 0.85996 1.49348 1.33794 1.26161 1.06051 1.19202 0.92167 0.92403 0.80882 1.21415 1.05035 1.14240 1.18920 0.93229 1.25735 1.01740 0.95332 0.94833 1.69996 1.39575 1.23305 1.22355 0.85366 0.78594 0.78665 0.77957 1.19589 1.19472 1.19632 0.94949 0.93886 0.91049 0.89484 0.88158 0.89128 0.93444 0.90340 0.91200 0.88990 0.88104 0.73953 0.80236 0.89512 0.88109 0.90749 0.95102 0.94213 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.80 71.98 0.71 -2.05 16 2 C -0.12 -1.56 5.36 30.59 0.16 -1.40 16 3 C 0.12 2.10 2.63 44.99 0.12 2.22 16 4 H 0.08 1.84 6.90 -2.39 -0.02 1.82 16 5 C -0.15 -1.82 9.19 71.98 0.66 -1.16 16 6 N -0.56 -12.15 2.21 -824.33 -1.83 -13.97 16 7 C 0.06 0.96 8.57 127.77 1.09 2.05 16 8 C 0.51 15.35 7.73 87.23 0.67 16.03 16 9 O -0.54 -19.44 15.82 -3.29 -0.05 -19.49 16 10 C 0.51 17.00 7.73 87.23 0.67 17.68 16 11 O -0.49 -15.27 10.26 -3.39 -0.03 -15.30 16 12 N -0.62 -24.04 5.40 -309.58 -1.67 -25.71 16 13 C 0.29 12.50 7.68 131.25 1.01 13.51 16 14 C -0.29 -11.22 9.58 22.15 0.21 -11.00 16 15 C 0.06 2.31 7.20 43.06 0.31 2.62 16 16 C -0.06 -1.57 10.44 71.24 0.74 -0.82 16 17 N -0.32 -15.27 12.56 -47.49 -0.60 -15.87 16 18 N -0.37 -18.13 3.62 -348.39 -1.26 -19.39 16 19 C 0.27 14.74 6.02 85.63 0.52 15.26 16 20 C -0.56 -31.88 9.39 25.60 0.24 -31.64 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 22 C 0.03 1.41 5.46 84.66 0.46 1.87 16 23 N -0.91 -52.51 13.29 21.45 0.28 -52.22 16 24 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 28 H 0.03 0.70 7.75 -2.39 -0.02 0.69 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.81 6.50 -2.39 -0.02 0.80 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 36 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.09 1.89 5.35 -2.48 -0.01 1.88 16 38 H 0.10 1.01 6.36 -2.39 -0.02 1.00 16 39 H 0.42 17.21 7.47 -92.71 -0.69 16.52 16 40 H 0.18 6.24 5.83 -2.91 -0.02 6.22 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.04 2.15 7.52 -2.39 -0.02 2.14 16 46 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -69.88 379.72 4.76 -65.12 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.31 Total: 27.69 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 7.59 Total: 23.16 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -5.07 Total: -127.16 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.09 Total: -34.80 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.88 4.76 -65.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532998769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.048 kcal (2) G-P(sol) polarization free energy of solvation -69.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds