Wall clock time and date at job start Tue Mar 31 2020 13:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 N 1.46496 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00220 * 269.99977 * 4 3 2 6 6 C 1.53006 * 109.47134 * 263.15559 * 5 4 3 7 7 C 1.34778 * 120.00008 * 90.00543 * 4 3 2 8 8 O 1.21366 * 119.99901 * 4.11585 * 7 4 3 9 9 C 1.49307 * 120.00257 * 184.12068 * 7 4 3 10 10 O 1.21395 * 119.99770 * 354.26954 * 9 7 4 11 11 N 1.34774 * 120.00388 * 174.26741 * 9 7 4 12 12 C 1.39201 * 120.00341 * 180.02562 * 11 9 7 13 13 C 1.36217 * 126.26862 * 0.17316 * 12 11 9 14 14 C 1.39695 * 107.85811 * 180.23981 * 13 12 11 15 15 C 1.50697 * 125.77317 * 179.74089 * 14 13 12 16 16 N 1.30854 * 108.45583 * 359.76202 * 14 13 12 17 17 N 1.35851 * 126.27431 * 179.97438 * 12 11 9 18 18 C 1.46498 * 126.09418 * 0.02921 * 17 12 11 19 19 C 1.50700 * 109.46770 * 269.70829 * 18 17 12 20 20 H 1.07996 * 120.00292 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99672 * 179.73124 * 19 18 17 22 22 N 1.31514 * 119.99512 * 180.27815 * 21 19 18 23 23 Si 1.86799 * 120.00029 * 0.27040 * 21 19 18 24 24 H 1.48504 * 109.46783 * 90.00637 * 23 21 19 25 25 H 1.48501 * 109.47057 * 210.00093 * 23 21 19 26 26 H 1.48491 * 109.47418 * 330.00565 * 23 21 19 27 27 H 1.09003 * 109.46510 * 299.99424 * 1 2 3 28 28 H 1.08993 * 109.47761 * 59.99582 * 1 2 3 29 29 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46898 * 240.00524 * 2 1 3 31 31 H 1.09002 * 109.47604 * 120.00543 * 2 1 3 32 32 H 1.09000 * 109.47322 * 60.00501 * 3 2 1 33 33 H 1.09002 * 109.47286 * 300.00738 * 3 2 1 34 34 H 1.09004 * 109.46699 * 23.15755 * 5 4 3 35 35 H 1.09000 * 109.47070 * 143.15636 * 5 4 3 36 36 H 1.09000 * 109.46294 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.46886 * 299.99585 * 6 5 4 38 38 H 1.09000 * 109.47079 * 60.00082 * 6 5 4 39 39 H 0.96998 * 119.99720 * 359.97438 * 11 9 7 40 40 H 1.08000 * 126.07479 * 0.02562 * 13 12 11 41 41 H 1.09007 * 109.46398 * 270.00038 * 15 14 13 42 42 H 1.09001 * 109.46904 * 29.99510 * 15 14 13 43 43 H 1.08991 * 109.47393 * 150.00193 * 15 14 13 44 44 H 1.09001 * 109.46955 * 149.71482 * 18 17 12 45 45 H 1.08995 * 109.47777 * 29.71226 * 18 17 12 46 46 H 0.97008 * 119.99338 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2380 1.4422 1.2678 6 6 4.6421 2.8745 1.6235 7 6 4.1784 1.4427 -1.1681 8 8 3.5734 1.5184 -2.2175 9 6 5.6685 1.3498 -1.1705 10 8 6.2801 1.3789 -0.1223 11 7 6.3347 1.2336 -2.3363 12 6 7.7239 1.1464 -2.3385 13 6 8.5341 1.1622 -1.2435 14 6 9.8549 1.0581 -1.6863 15 6 11.0796 1.0423 -0.8084 16 7 9.8488 0.9771 -2.9923 17 7 8.5200 1.0261 -3.4327 18 6 8.0694 0.9653 -4.8254 19 6 7.8326 -0.4712 -5.2144 20 1 8.0012 -1.2600 -4.4963 21 6 7.3957 -0.7780 -6.4857 22 7 7.1837 -2.0313 -6.8234 23 14 7.1046 0.5863 -7.7280 24 1 8.3555 0.8392 -8.4875 25 1 6.0290 0.1791 -8.6674 26 1 6.6983 1.8249 -7.0169 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.6017 1.0380 2.0551 35 1 5.1319 0.8260 1.1707 36 1 5.1872 2.8742 2.5675 37 1 5.2784 3.2786 0.8363 38 1 3.7483 3.4907 1.7206 39 1 5.8459 1.2099 -3.1738 40 1 8.2126 1.2445 -0.2158 41 1 11.4341 2.0625 -0.6610 42 1 10.8293 0.6016 0.1566 43 1 11.8613 0.4516 -1.2859 44 1 8.8328 1.3961 -5.4733 45 1 7.1423 1.5283 -4.9323 46 1 6.8760 -2.2471 -7.7177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533000091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:05 Heat of formation + Delta-G solvation = 17.358395 kcal Electronic energy + Delta-G solvation = -27878.933269 eV Core-core repulsion = 23999.177054 eV Total energy + Delta-G solvation = -3879.756215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35060 -40.37108 -38.54870 -36.87085 -34.92715 -33.95815 -33.62888 -32.17189 -30.51785 -29.62052 -28.71767 -27.16576 -26.34786 -24.59585 -23.37525 -22.50865 -21.90180 -20.55995 -19.83566 -19.05079 -17.56006 -17.18324 -17.12928 -16.54426 -16.15414 -15.74408 -15.15930 -14.91657 -14.64989 -14.53722 -14.30870 -13.94771 -13.69257 -13.34555 -13.19956 -12.82806 -12.77424 -12.63142 -12.51343 -12.38424 -12.29315 -12.02851 -11.92901 -11.84799 -11.60648 -11.40452 -11.21805 -11.04482 -10.92982 -10.80424 -10.55434 -10.25947 -9.89278 -9.74220 -9.35612 -8.95318 -8.83192 -8.02660 -7.62385 -6.31243 -4.35987 1.21526 2.04944 2.55187 3.04982 3.13728 3.17402 3.18996 3.22627 3.49603 3.61880 4.17433 4.21110 4.66842 4.69388 4.82766 4.94713 5.02225 5.12137 5.18220 5.22598 5.33940 5.38042 5.48621 5.50598 5.58983 5.75223 5.78392 5.87415 5.94021 5.95645 5.98698 6.02081 6.09713 6.11088 6.25324 6.27294 6.33498 6.49845 6.67378 6.88998 7.20666 7.28196 7.37477 7.47427 7.74824 7.98147 8.24754 8.47630 8.73556 9.23278 10.80956 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009991 B = 0.004315 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.783803 B = 6486.958024 C = 8680.473317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.112 3.888 4 N -0.583 5.583 5 C 0.088 3.912 6 C -0.159 4.159 7 C 0.514 3.486 8 O -0.511 6.511 9 C 0.512 3.488 10 O -0.488 6.488 11 N -0.609 5.609 12 C 0.298 3.702 13 C -0.284 4.284 14 C 0.054 3.946 15 C -0.063 4.063 16 N -0.276 5.276 17 N -0.341 5.341 18 C 0.228 3.772 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.882 5.882 23 Si 0.873 3.127 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.264 1.264 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.426 0.574 40 H 0.165 0.835 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.041 0.959 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 8.539 17.518 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C -0.010 4.010 4 N -0.317 5.317 5 C -0.033 4.033 6 C -0.218 4.218 7 C 0.296 3.704 8 O -0.386 6.386 9 C 0.294 3.706 10 O -0.362 6.362 11 N -0.256 5.256 12 C 0.076 3.924 13 C -0.316 4.316 14 C -0.111 4.111 15 C -0.122 4.122 16 N -0.101 5.101 17 N -0.126 5.126 18 C 0.109 3.891 19 C -0.585 4.585 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.519 5.519 23 Si 0.699 3.301 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.189 1.189 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.265 0.735 40 H 0.183 0.817 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.376 8.366 16.346 20.183 hybrid contribution -1.085 0.495 -0.673 1.369 sum -9.461 8.861 15.673 20.339 Atomic orbital electron populations 1.21678 0.94856 1.02141 1.01924 1.21912 0.96404 0.96766 1.03000 1.21684 0.77960 0.97595 1.03721 1.47842 1.06901 1.70912 1.06060 1.22209 0.98268 0.99278 0.83595 1.22077 1.01098 0.96171 1.02417 1.19796 0.87682 0.78455 0.84492 1.90809 1.69450 1.47585 1.30791 1.19940 0.88566 0.78541 0.83587 1.90601 1.68649 1.46899 1.30089 1.42341 1.04022 1.68428 1.10833 1.17958 0.81314 1.03400 0.89698 1.21289 0.90766 1.20780 0.98722 1.22045 0.95608 1.01475 0.92013 1.20042 0.92897 1.02169 0.97062 1.77377 0.95826 1.24982 1.11885 1.49120 1.02285 1.54951 1.06246 1.20006 0.95333 0.99744 0.74005 1.21160 1.47490 0.90241 0.99657 0.90024 1.24808 0.94189 0.95673 0.97655 1.69871 1.44253 1.17252 1.20478 0.86903 0.78955 0.82291 0.81975 1.19466 1.20392 1.18912 0.92669 0.92346 0.92302 0.91210 0.91625 0.89981 0.89383 0.90749 0.86602 0.91301 0.92001 0.93263 0.73508 0.81749 0.91257 0.90955 0.91324 0.92989 0.94115 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.14 -1.26 6.26 -26.73 -0.17 -1.43 16 3 C 0.11 1.03 5.41 -4.05 -0.02 1.01 16 4 N -0.58 -6.56 2.49 -174.25 -0.43 -6.99 16 5 C 0.09 0.83 5.71 -4.04 -0.02 0.81 16 6 C -0.16 -1.44 9.74 37.16 0.36 -1.07 16 7 C 0.51 7.51 7.67 -11.65 -0.09 7.42 16 8 O -0.51 -8.65 16.04 5.48 0.09 -8.57 16 9 C 0.51 8.17 7.62 -11.65 -0.09 8.08 16 10 O -0.49 -7.54 8.97 5.46 0.05 -7.50 16 11 N -0.61 -11.12 5.40 -11.80 -0.06 -11.19 16 12 C 0.30 6.14 7.68 -152.85 -1.17 4.96 16 13 C -0.28 -5.43 9.58 -39.76 -0.38 -5.81 16 14 C 0.05 1.02 7.20 -82.47 -0.59 0.43 16 15 C -0.06 -0.87 10.44 36.00 0.38 -0.49 16 16 N -0.28 -6.20 12.56 33.64 0.42 -5.78 16 17 N -0.34 -7.82 3.62 -61.47 -0.22 -8.04 16 18 C 0.23 5.47 5.09 -5.19 -0.03 5.44 16 19 C -0.55 -15.27 9.94 -34.44 -0.34 -15.61 16 20 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 21 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 22 N -0.88 -26.16 13.96 55.43 0.77 -25.39 16 23 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.09 0.91 7.37 -51.93 -0.38 0.52 16 34 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16 35 H 0.12 1.30 5.38 -51.93 -0.28 1.02 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.69 7.04 -51.93 -0.37 0.33 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.43 7.85 7.47 -40.82 -0.30 7.54 16 40 H 0.17 2.89 5.83 -52.49 -0.31 2.58 16 41 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 1.24 7.58 -51.93 -0.39 0.84 16 45 H 0.04 0.91 6.56 -51.93 -0.34 0.57 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -32.18 380.09 -7.25 -39.44 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.03 Total: 7.53 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.90 Total: 5.21 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.48 Total: -57.39 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.14 Total: -16.06 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.18 -7.25 -39.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533000091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.796 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds