Wall clock time and date at job start Tue Mar 31 2020 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 N 1.46496 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00220 * 269.99977 * 4 3 2 6 6 C 1.53006 * 109.47134 * 263.15559 * 5 4 3 7 7 C 1.34778 * 120.00008 * 90.00543 * 4 3 2 8 8 O 1.21366 * 119.99901 * 4.11585 * 7 4 3 9 9 C 1.49307 * 120.00257 * 184.12068 * 7 4 3 10 10 O 1.21395 * 119.99770 * 354.26954 * 9 7 4 11 11 N 1.34774 * 120.00388 * 174.26741 * 9 7 4 12 12 C 1.39201 * 120.00341 * 180.02562 * 11 9 7 13 13 C 1.36217 * 126.26862 * 0.17316 * 12 11 9 14 14 C 1.39695 * 107.85811 * 180.23981 * 13 12 11 15 15 C 1.50697 * 125.77317 * 179.74089 * 14 13 12 16 16 N 1.30854 * 108.45583 * 359.76202 * 14 13 12 17 17 N 1.35851 * 126.27431 * 179.97438 * 12 11 9 18 18 C 1.46498 * 126.09418 * 0.02921 * 17 12 11 19 19 C 1.50700 * 109.46770 * 269.70829 * 18 17 12 20 20 H 1.07996 * 120.00292 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99672 * 179.73124 * 19 18 17 22 22 N 1.31514 * 119.99512 * 180.27815 * 21 19 18 23 23 Si 1.86799 * 120.00029 * 0.27040 * 21 19 18 24 24 H 1.48504 * 109.46783 * 90.00637 * 23 21 19 25 25 H 1.48501 * 109.47057 * 210.00093 * 23 21 19 26 26 H 1.48491 * 109.47418 * 330.00565 * 23 21 19 27 27 H 1.09003 * 109.46510 * 299.99424 * 1 2 3 28 28 H 1.08993 * 109.47761 * 59.99582 * 1 2 3 29 29 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46898 * 240.00524 * 2 1 3 31 31 H 1.09002 * 109.47604 * 120.00543 * 2 1 3 32 32 H 1.09000 * 109.47322 * 60.00501 * 3 2 1 33 33 H 1.09002 * 109.47286 * 300.00738 * 3 2 1 34 34 H 1.09004 * 109.46699 * 23.15755 * 5 4 3 35 35 H 1.09000 * 109.47070 * 143.15636 * 5 4 3 36 36 H 1.09000 * 109.46294 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.46886 * 299.99585 * 6 5 4 38 38 H 1.09000 * 109.47079 * 60.00082 * 6 5 4 39 39 H 0.96998 * 119.99720 * 359.97438 * 11 9 7 40 40 H 1.08000 * 126.07479 * 0.02562 * 13 12 11 41 41 H 1.09007 * 109.46398 * 270.00038 * 15 14 13 42 42 H 1.09001 * 109.46904 * 29.99510 * 15 14 13 43 43 H 1.08991 * 109.47393 * 150.00193 * 15 14 13 44 44 H 1.09001 * 109.46955 * 149.71482 * 18 17 12 45 45 H 1.08995 * 109.47777 * 29.71226 * 18 17 12 46 46 H 0.97008 * 119.99338 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2380 1.4422 1.2678 6 6 4.6421 2.8745 1.6235 7 6 4.1784 1.4427 -1.1681 8 8 3.5734 1.5184 -2.2175 9 6 5.6685 1.3498 -1.1705 10 8 6.2801 1.3789 -0.1223 11 7 6.3347 1.2336 -2.3363 12 6 7.7239 1.1464 -2.3385 13 6 8.5341 1.1622 -1.2435 14 6 9.8549 1.0581 -1.6863 15 6 11.0796 1.0423 -0.8084 16 7 9.8488 0.9771 -2.9923 17 7 8.5200 1.0261 -3.4327 18 6 8.0694 0.9653 -4.8254 19 6 7.8326 -0.4712 -5.2144 20 1 8.0012 -1.2600 -4.4963 21 6 7.3957 -0.7780 -6.4857 22 7 7.1837 -2.0313 -6.8234 23 14 7.1046 0.5863 -7.7280 24 1 8.3555 0.8392 -8.4875 25 1 6.0290 0.1791 -8.6674 26 1 6.6983 1.8249 -7.0169 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.6017 1.0380 2.0551 35 1 5.1319 0.8260 1.1707 36 1 5.1872 2.8742 2.5675 37 1 5.2784 3.2786 0.8363 38 1 3.7483 3.4907 1.7206 39 1 5.8459 1.2099 -3.1738 40 1 8.2126 1.2445 -0.2158 41 1 11.4341 2.0625 -0.6610 42 1 10.8293 0.6016 0.1566 43 1 11.8613 0.4516 -1.2859 44 1 8.8328 1.3961 -5.4733 45 1 7.1423 1.5283 -4.9323 46 1 6.8760 -2.2471 -7.7177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533000091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:04 Heat of formation + Delta-G solvation = -3.504875 kcal Electronic energy + Delta-G solvation = -27879.837968 eV Core-core repulsion = 23999.177054 eV Total energy + Delta-G solvation = -3880.660914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.72743 -41.71465 -39.79419 -37.91407 -36.31366 -35.65570 -34.55707 -34.00628 -31.33218 -31.20354 -30.22311 -28.14227 -28.01506 -25.66340 -24.47432 -24.10879 -22.89279 -21.80090 -21.33050 -20.30021 -19.31137 -18.79866 -18.37565 -17.91606 -17.35749 -16.96890 -16.59369 -16.12081 -15.99605 -15.77637 -15.50441 -15.20920 -14.91681 -14.66191 -14.54439 -14.28609 -14.11336 -13.78105 -13.57368 -13.54098 -13.26445 -13.17716 -12.98756 -12.95689 -12.81139 -12.60915 -12.40902 -12.28486 -12.22456 -12.01893 -11.87447 -11.75757 -11.63266 -11.42454 -10.95695 -10.52758 -9.92293 -9.66954 -9.18565 -8.46610 -6.58762 -0.05414 0.79263 1.05692 1.30437 1.32461 1.41334 1.72759 1.80069 2.08641 2.20782 2.28007 2.85296 2.97792 3.73402 3.94183 3.99180 4.08704 4.11441 4.35353 4.39797 4.40896 4.44261 4.50743 4.58422 4.60793 4.66702 4.71447 4.83406 4.88224 4.91944 4.92627 5.07310 5.09901 5.14492 5.16689 5.17851 5.20453 5.31927 5.38120 5.47228 5.78917 5.82029 5.91789 6.00781 6.17370 6.42969 6.49330 6.70089 6.90220 7.05891 8.69856 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009991 B = 0.004315 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.783803 B = 6486.958024 C = 8680.473317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.109 3.891 4 N -0.569 5.569 5 C 0.084 3.916 6 C -0.155 4.155 7 C 0.512 3.488 8 O -0.543 6.543 9 C 0.512 3.488 10 O -0.481 6.481 11 N -0.618 5.618 12 C 0.291 3.709 13 C -0.287 4.287 14 C 0.062 3.938 15 C -0.061 4.061 16 N -0.320 5.320 17 N -0.368 5.368 18 C 0.238 3.762 19 C -0.555 4.555 20 H 0.025 0.975 21 C 0.026 3.974 22 N -0.932 5.932 23 Si 0.948 3.052 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.239 1.239 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.423 0.577 40 H 0.182 0.818 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 10.621 19.705 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.012 4.012 4 N -0.301 5.301 5 C -0.037 4.037 6 C -0.213 4.213 7 C 0.293 3.707 8 O -0.421 6.421 9 C 0.294 3.706 10 O -0.354 6.354 11 N -0.266 5.266 12 C 0.070 3.930 13 C -0.318 4.318 14 C -0.104 4.104 15 C -0.120 4.120 16 N -0.145 5.145 17 N -0.154 5.154 18 C 0.118 3.882 19 C -0.593 4.593 20 H 0.044 0.956 21 C -0.175 4.175 22 N -0.570 5.570 23 Si 0.768 3.232 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.162 1.162 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.260 0.740 40 H 0.199 0.801 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.383 10.456 18.619 23.325 hybrid contribution -0.781 -0.245 -1.109 1.378 sum -10.163 10.211 17.510 22.675 Atomic orbital electron populations 1.21658 0.93342 1.02514 1.02720 1.21880 0.97695 0.96238 1.01958 1.21935 0.76273 0.98062 1.04928 1.48034 1.07943 1.68579 1.05573 1.22361 0.98266 0.99650 0.83387 1.22035 1.01456 0.95599 1.02172 1.19603 0.86814 0.78970 0.85273 1.90794 1.69546 1.49701 1.32017 1.20326 0.89355 0.77895 0.82981 1.90591 1.68935 1.46195 1.29650 1.42502 1.03242 1.69332 1.11528 1.18372 0.82324 1.02726 0.89588 1.21576 0.90724 1.20592 0.98945 1.22939 0.97430 0.98553 0.91441 1.20264 0.90660 1.04058 0.96982 1.77324 0.96001 1.27379 1.13807 1.48997 1.03046 1.57119 1.06190 1.19736 0.96123 0.97040 0.75287 1.21221 1.47841 0.91230 0.99021 0.95649 1.25803 0.93364 0.98514 0.99809 1.70024 1.45552 1.20008 1.21439 0.85727 0.79229 0.79381 0.78821 1.18528 1.19774 1.16233 0.90486 0.92922 0.92197 0.94445 0.90466 0.86223 0.90669 0.87201 0.88424 0.89728 0.94630 0.91767 0.73952 0.80132 0.88774 0.88434 0.91094 0.92673 0.92271 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.14 -2.26 6.26 30.59 0.19 -2.07 16 3 C 0.11 1.76 5.41 86.38 0.47 2.22 16 4 N -0.57 -11.92 2.49 -823.55 -2.05 -13.97 16 5 C 0.08 1.37 5.71 86.38 0.49 1.86 16 6 C -0.15 -2.36 9.74 71.98 0.70 -1.66 16 7 C 0.51 14.96 7.67 87.22 0.67 15.63 16 8 O -0.54 -18.78 16.04 -3.30 -0.05 -18.84 16 9 C 0.51 16.44 7.62 87.23 0.67 17.11 16 10 O -0.48 -14.55 8.97 -3.39 -0.03 -14.58 16 11 N -0.62 -23.21 5.40 -309.58 -1.67 -24.88 16 12 C 0.29 12.22 7.68 131.25 1.01 13.23 16 13 C -0.29 -10.86 9.58 22.15 0.21 -10.65 16 14 C 0.06 2.33 7.20 43.06 0.31 2.64 16 15 C -0.06 -1.55 10.44 71.23 0.74 -0.81 16 16 N -0.32 -14.65 12.56 -47.49 -0.60 -15.25 16 17 N -0.37 -17.35 3.62 -348.40 -1.26 -18.61 16 18 C 0.24 11.64 5.09 85.63 0.44 12.08 16 19 C -0.56 -32.41 9.94 25.60 0.25 -32.16 16 20 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 21 C 0.03 1.46 5.47 84.66 0.46 1.93 16 22 N -0.93 -57.42 13.96 21.45 0.30 -57.12 16 23 Si 0.95 41.87 27.47 68.60 1.88 43.75 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 1.09 8.07 -2.39 -0.02 1.07 16 33 H 0.07 1.46 7.37 -2.39 -0.02 1.45 16 34 H 0.11 1.08 8.02 -2.39 -0.02 1.06 16 35 H 0.10 2.01 5.38 -2.43 -0.01 2.00 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.03 0.74 7.04 -2.39 -0.02 0.72 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.42 16.21 7.47 -92.71 -0.69 15.52 16 40 H 0.18 6.11 5.83 -2.91 -0.02 6.09 16 41 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 2.63 7.58 -2.39 -0.02 2.62 16 45 H 0.06 2.65 6.56 -2.39 -0.02 2.63 16 46 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -74.59 380.09 4.10 -70.50 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.25 Total: 30.72 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 7.33 Total: 18.28 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.28 Total: -129.83 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.08 Total: -33.42 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.75 kcal Total: -74.59 4.10 -70.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533000091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.991 kcal (2) G-P(sol) polarization free energy of solvation -74.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds