Wall clock time and date at job start Tue Mar 31 2020 14:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46908 * 2 1 4 4 O 1.42889 * 109.47443 * 119.99997 * 2 1 3 5 5 C 1.42902 * 114.00249 * 150.00321 * 4 2 1 6 6 H 1.09006 * 110.88298 * 333.88152 * 5 4 2 7 7 C 1.55159 * 111.00559 * 210.00377 * 5 4 2 8 8 C 1.54328 * 102.94106 * 206.38472 * 7 5 4 9 9 N 1.47025 * 107.27132 * 22.18795 * 8 7 5 10 10 C 1.34774 * 125.64431 * 181.02259 * 9 8 7 11 11 O 1.21843 * 119.99749 * 180.02562 * 10 9 8 12 12 N 1.33835 * 120.00420 * 0.02791 * 10 9 8 13 13 C 1.32934 * 119.99780 * 180.02562 * 12 10 9 14 14 C 1.41205 * 126.38100 * 359.69068 * 13 12 10 15 15 C 1.34953 * 108.24331 * 179.82576 * 14 13 12 16 16 N 1.36459 * 108.94895 * 0.43894 * 15 14 13 17 17 C 1.46498 * 125.85445 * 179.75829 * 16 15 14 18 18 C 1.50702 * 109.47226 * 274.95748 * 17 16 15 19 19 H 1.08001 * 119.99657 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99821 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00581 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99694 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47351 * 59.99751 * 22 20 18 24 24 H 1.48506 * 109.47211 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47235 * 299.99728 * 22 20 18 26 26 N 1.37419 * 126.37385 * 180.02562 * 13 12 10 27 27 H 0.96999 * 126.36686 * 359.97438 * 26 13 12 28 28 C 1.47424 * 108.70283 * 1.28967 * 9 8 7 29 29 H 1.08994 * 109.47128 * 299.99774 * 1 2 3 30 30 H 1.09006 * 109.47584 * 60.00139 * 1 2 3 31 31 H 1.09003 * 109.46900 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47518 * 240.00475 * 2 1 3 33 33 H 1.09006 * 109.46885 * 300.00289 * 3 2 1 34 34 H 1.08994 * 109.47041 * 60.00173 * 3 2 1 35 35 H 1.08997 * 109.47278 * 179.97438 * 3 2 1 36 36 H 1.09000 * 110.72069 * 88.01950 * 7 5 4 37 37 H 1.09001 * 110.72011 * 324.74405 * 7 5 4 38 38 H 1.08995 * 109.88055 * 262.77370 * 8 7 5 39 39 H 1.08994 * 109.88199 * 141.61063 * 8 7 5 40 40 H 1.07998 * 125.87457 * 359.97438 * 14 13 12 41 41 H 1.07999 * 125.53143 * 180.13783 * 15 14 13 42 42 H 1.09001 * 109.47165 * 34.96182 * 17 16 15 43 43 H 1.09004 * 109.46965 * 154.95924 * 17 16 15 44 44 H 0.96993 * 120.00659 * 179.97438 * 21 20 18 45 45 H 1.09004 * 110.36518 * 94.47823 * 28 9 8 46 46 H 1.08996 * 110.36678 * 216.80329 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2660 -1.3243 0.9885 6 1 3.4225 -1.5885 -0.0574 7 6 3.3803 -2.5742 1.9008 8 6 4.9036 -2.7154 2.1043 9 7 5.5026 -1.3978 1.8458 10 6 6.8178 -1.1087 1.8999 11 8 7.2028 0.0234 1.6661 12 7 7.7011 -2.0651 2.2103 13 6 8.9983 -1.7797 2.2642 14 6 9.5903 -0.5223 2.0142 15 6 10.9247 -0.6442 2.1748 16 7 11.2147 -1.9351 2.5091 17 6 12.5522 -2.4757 2.7640 18 6 13.1892 -2.8766 1.4584 19 1 12.6516 -2.7417 0.5315 20 6 14.4582 -3.4155 1.4474 21 7 15.1130 -3.5793 2.5761 22 14 15.2480 -3.9118 -0.1711 23 1 15.3553 -2.7231 -1.0546 24 1 16.6038 -4.4599 0.0873 25 1 14.4131 -4.9464 -0.8326 26 7 10.0134 -2.6549 2.5672 27 1 9.9166 -3.5959 2.7819 28 6 4.4256 -0.4439 1.5240 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4427 0.0005 36 1 2.9746 -3.4543 1.4019 37 1 2.8783 -2.4037 2.8532 38 1 5.3046 -3.4486 1.4045 39 1 5.1138 -3.0238 3.1284 40 1 9.0653 0.3818 1.7437 41 1 11.6466 0.1498 2.0533 42 1 13.1649 -1.7158 3.2491 43 1 12.4739 -3.3480 3.4130 44 1 16.0056 -3.9588 2.5683 45 1 4.1145 0.0934 2.4199 46 1 4.7556 0.2559 0.7563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563087242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:21 Heat of formation + Delta-G solvation = 28.654832 kcal Electronic energy + Delta-G solvation = -26596.986643 eV Core-core repulsion = 22717.720278 eV Total energy + Delta-G solvation = -3879.266365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.76802 -39.70653 -38.40040 -36.53471 -34.21344 -32.93363 -32.89808 -31.02906 -30.85254 -30.12739 -28.54570 -27.34846 -26.61315 -23.85433 -22.80318 -21.61948 -21.45430 -21.26790 -20.95136 -19.06213 -17.32757 -17.17208 -16.88957 -16.28891 -15.70459 -15.30854 -15.25324 -14.95211 -14.70817 -14.47232 -14.12186 -13.87375 -13.52910 -13.44259 -13.16686 -12.83442 -12.70584 -12.58919 -12.51086 -12.42848 -12.34704 -12.01755 -11.93736 -11.55576 -11.34985 -11.27880 -11.04188 -10.98422 -10.72222 -10.54034 -10.40597 -9.78201 -9.68582 -9.57056 -9.01762 -8.91050 -8.34623 -8.20583 -6.87311 -6.47413 -4.64782 1.79847 2.08939 3.07694 3.13188 3.13274 3.14593 3.18561 3.67754 4.06726 4.40563 4.49119 4.55987 4.63497 4.72851 4.80674 4.82236 4.87051 4.94426 5.16810 5.28772 5.32321 5.33857 5.49827 5.53418 5.59316 5.64615 5.68746 5.82662 5.88209 5.92101 5.97267 5.97490 6.02704 6.12499 6.17312 6.53908 6.57080 6.66979 6.92836 7.10314 7.31906 7.40147 7.52458 7.64637 7.86048 8.26057 8.44302 8.49641 9.05688 9.59899 10.53388 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.002037 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.933500 B =13742.132671 C =13756.897025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.179 4.179 4 O -0.367 6.367 5 C 0.075 3.925 6 H 0.077 0.923 7 C -0.131 4.131 8 C 0.125 3.875 9 N -0.617 5.617 10 C 0.704 3.296 11 O -0.629 6.629 12 N -0.708 5.708 13 C 0.486 3.514 14 C -0.334 4.334 15 C 0.162 3.838 16 N -0.346 5.346 17 C 0.255 3.745 18 C -0.558 4.558 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.887 5.887 22 Si 0.910 3.090 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.471 5.471 27 H 0.444 0.556 28 C 0.109 3.891 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.182 0.818 41 H 0.187 0.813 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.272 0.728 45 H 0.067 0.933 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.472 3.706 -2.345 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.236 4.236 4 O -0.285 6.285 5 C 0.016 3.984 6 H 0.095 0.905 7 C -0.169 4.169 8 C 0.001 3.999 9 N -0.356 5.356 10 C 0.405 3.595 11 O -0.511 6.511 12 N -0.472 5.472 13 C 0.233 3.767 14 C -0.367 4.367 15 C 0.017 3.983 16 N -0.132 5.132 17 C 0.139 3.861 18 C -0.596 4.596 19 H 0.087 0.913 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.736 3.264 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.194 5.194 27 H 0.291 0.709 28 C -0.015 4.015 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.199 0.801 41 H 0.204 0.796 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.173 3.259 -1.964 20.529 hybrid contribution 0.897 -0.214 -1.061 1.405 sum -19.277 3.045 -3.025 19.749 Atomic orbital electron populations 1.21860 0.93642 1.02612 1.02499 1.22212 0.94900 0.92804 0.87964 1.22384 1.02124 0.96597 1.02502 1.87932 1.35271 1.69594 1.35698 1.23386 0.83434 0.92453 0.99132 0.90460 1.22800 0.96212 0.97083 1.00807 1.21664 0.90414 0.86234 1.01542 1.46902 1.03995 1.10298 1.74372 1.16128 0.81302 0.84344 0.77707 1.90738 1.77935 1.24940 1.57492 1.68049 0.97650 1.35967 1.45571 1.18699 0.87155 0.86210 0.84650 1.22385 0.92716 1.00883 1.20723 1.22798 0.97709 0.85617 0.92164 1.47978 0.99283 1.05067 1.60835 1.20031 0.70917 0.96670 0.98470 1.21384 1.01162 1.44450 0.92645 0.91281 1.24952 0.96512 0.94522 0.97525 1.69883 1.13434 1.42962 1.26066 0.86347 0.78309 0.79241 0.82472 1.19686 1.20817 1.19876 1.44425 0.97519 1.10333 1.67084 0.70891 1.22415 0.86360 0.92295 1.00462 0.91773 0.91327 0.92051 0.92116 0.91769 0.91718 0.91982 0.89957 0.89789 0.91646 0.91559 0.80071 0.79640 0.91425 0.93116 0.91803 0.91528 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.56 37.16 0.36 -0.66 16 2 C 0.08 0.67 3.34 -26.73 -0.09 0.58 16 3 C -0.18 -1.49 9.53 37.16 0.35 -1.13 16 4 O -0.37 -3.94 9.80 -35.23 -0.35 -4.29 16 5 C 0.07 0.83 3.52 -24.46 -0.09 0.74 16 6 H 0.08 0.80 7.40 -51.93 -0.38 0.42 16 7 C -0.13 -1.34 6.68 -24.89 -0.17 -1.51 16 8 C 0.13 1.66 6.82 -3.06 -0.02 1.63 16 9 N -0.62 -10.32 3.32 -176.33 -0.59 -10.91 16 10 C 0.70 14.52 8.40 -87.76 -0.74 13.79 16 11 O -0.63 -14.29 13.52 5.06 0.07 -14.22 16 12 N -0.71 -14.39 10.05 -15.79 -0.16 -14.55 16 13 C 0.49 9.65 8.07 -155.29 -1.25 8.40 16 14 C -0.33 -6.40 9.52 -39.62 -0.38 -6.78 16 15 C 0.16 2.79 11.45 -16.66 -0.19 2.60 16 16 N -0.35 -6.48 3.63 -62.24 -0.23 -6.70 16 17 C 0.26 5.34 6.19 -5.19 -0.03 5.31 16 18 C -0.56 -13.31 9.39 -34.44 -0.32 -13.63 16 19 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -22.54 13.29 55.43 0.74 -21.80 16 22 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 N -0.47 -8.52 7.38 31.33 0.23 -8.29 16 27 H 0.44 7.08 8.96 -182.55 -1.64 5.44 16 28 C 0.11 1.54 6.25 -2.41 -0.02 1.52 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 7.38 -51.93 -0.38 0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.59 6.89 -51.93 -0.36 0.23 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.18 3.68 5.77 -52.49 -0.30 3.38 16 41 H 0.19 2.53 8.06 -52.49 -0.42 2.10 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.09 7.23 -51.93 -0.38 0.71 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -30.03 381.55 -10.71 -40.74 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.48 Total: 7.50 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -2.68 Total: 12.48 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.00 Total: -62.25 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.28 Total: -18.50 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.03 -10.71 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563087242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.396 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds