Wall clock time and date at job start Tue Mar 31 2020 13:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47179 * 2 1 4 4 N 1.46494 * 109.46926 * 120.00467 * 2 1 3 5 5 C 1.46499 * 120.00084 * 294.93915 * 4 2 1 6 6 C 1.50703 * 109.46977 * 263.04553 * 5 4 2 7 7 H 1.07999 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00020 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99874 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46885 * 90.00212 * 10 8 6 12 12 H 1.48499 * 109.47323 * 210.00305 * 10 8 6 13 13 H 1.48503 * 109.46880 * 330.00524 * 10 8 6 14 14 C 1.34783 * 120.00302 * 114.93762 * 4 2 1 15 15 O 1.21361 * 119.99780 * 3.93991 * 14 4 2 16 16 C 1.49328 * 120.00120 * 183.93725 * 14 4 2 17 17 O 1.21399 * 119.99731 * 354.88304 * 16 14 4 18 18 N 1.34772 * 120.00192 * 174.88233 * 16 14 4 19 19 C 1.40478 * 120.00249 * 180.02562 * 18 16 14 20 20 C 1.40337 * 126.11536 * 0.02562 * 19 18 16 21 21 N 1.30822 * 108.20800 * 179.76075 * 20 19 18 22 22 N 1.40053 * 108.36786 * 0.37499 * 21 20 19 23 23 C 1.46505 * 125.99471 * 179.88285 * 22 21 20 24 24 C 1.53005 * 109.46713 * 264.68913 * 23 22 21 25 25 C 1.52998 * 109.46835 * 144.69281 * 23 22 21 26 26 C 1.35230 * 108.01290 * 359.62002 * 22 21 20 27 27 H 1.08995 * 109.47102 * 300.00119 * 1 2 3 28 28 H 1.09005 * 109.47044 * 59.99899 * 1 2 3 29 29 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46966 * 240.00539 * 2 1 3 31 31 H 1.09002 * 109.47178 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47646 * 300.00342 * 3 2 1 33 33 H 1.09003 * 109.46881 * 59.99862 * 3 2 1 34 34 H 1.09005 * 109.47025 * 23.04403 * 5 4 2 35 35 H 1.08998 * 109.47303 * 143.04573 * 5 4 2 36 36 H 0.96998 * 119.99819 * 179.97438 * 9 8 6 37 37 H 0.97009 * 119.99679 * 0.02562 * 18 16 14 38 38 H 1.07999 * 125.89377 * 0.02562 * 20 19 18 39 39 H 1.08991 * 109.46946 * 24.68828 * 23 22 21 40 40 H 1.09000 * 109.46752 * 60.00513 * 24 23 22 41 41 H 1.08994 * 109.47209 * 300.00432 * 24 23 22 42 42 H 1.08997 * 109.46704 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47587 * 299.99439 * 25 23 22 44 44 H 1.09000 * 109.47667 * 60.00238 * 25 23 22 45 45 H 1.09010 * 109.46977 * 179.97438 * 25 23 22 46 46 H 1.07999 * 126.18480 * 180.22785 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7581 -0.1290 2.5238 6 6 2.9585 0.6600 2.9795 7 1 3.8283 0.7352 2.3439 8 6 2.9462 1.2860 4.2080 9 7 1.8871 1.1941 4.9823 10 14 4.4343 2.2634 4.7732 11 1 4.2970 3.6743 4.3307 12 1 4.5244 2.2158 6.2547 13 1 5.6646 1.6772 4.1833 14 6 2.7069 -1.8430 1.0750 15 8 2.9844 -2.2712 -0.0261 16 6 3.1284 -2.5927 2.2958 17 8 2.9332 -2.1192 3.3964 18 7 3.7256 -3.7949 2.1756 19 6 4.1216 -4.5004 3.3240 20 6 3.9589 -4.0771 4.6521 21 7 4.4457 -5.0022 5.4386 22 7 4.9426 -6.0417 4.6424 23 6 5.5754 -7.2708 5.1274 24 6 7.0954 -7.0952 5.1297 25 6 5.1979 -8.4352 4.2096 26 6 4.7307 -5.7146 3.3475 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8898 33 1 1.6766 1.9562 0.8900 34 1 0.8887 0.5269 2.4769 35 1 1.5656 -0.9375 3.2291 36 1 1.8786 1.6342 5.8466 37 1 3.8819 -4.1730 1.2960 38 1 3.5057 -3.1497 4.9700 39 1 5.2324 -7.4806 6.1405 40 1 7.3642 -6.2656 5.7836 41 1 7.4384 -6.8852 4.1167 42 1 7.5661 -8.0094 5.4910 43 1 4.1152 -8.5603 4.2079 44 1 5.5410 -8.2254 3.1965 45 1 5.6691 -9.3496 4.5702 46 1 4.9973 -6.3108 2.4873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566657411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:01 Heat of formation + Delta-G solvation = 24.510929 kcal Electronic energy + Delta-G solvation = -28080.126836 eV Core-core repulsion = 24200.680779 eV Total energy + Delta-G solvation = -3879.446058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27002 -39.97547 -38.00020 -36.14308 -35.82360 -34.05682 -32.75189 -31.20355 -30.10482 -28.84253 -27.60221 -27.20941 -26.60236 -24.68961 -22.97811 -22.75454 -21.53428 -20.27275 -19.84314 -18.53327 -17.48618 -16.87920 -16.39105 -16.33100 -15.48318 -15.30355 -14.99073 -14.74956 -14.50977 -14.24115 -13.92047 -13.65383 -13.57856 -13.13661 -13.03147 -12.83575 -12.49334 -12.41407 -12.35941 -12.23995 -11.73421 -11.69239 -11.62139 -11.51428 -11.41365 -10.97172 -10.80882 -10.79346 -10.57774 -10.50842 -10.40044 -10.09378 -9.89368 -9.54108 -9.22224 -8.65923 -8.19323 -7.79295 -7.43626 -5.96857 -3.98251 1.81388 2.27235 2.42954 3.05286 3.13500 3.34504 3.41976 3.45896 4.03279 4.18562 4.34257 4.51472 4.60431 4.77464 4.80083 5.06686 5.14719 5.22320 5.29525 5.35773 5.39377 5.44390 5.51827 5.62474 5.65900 5.76886 5.83002 5.85222 5.90945 6.06545 6.12691 6.29843 6.39228 6.45278 6.67599 6.80173 6.96968 7.08029 7.16902 7.43689 7.53315 7.65505 7.92754 7.93426 8.18741 8.27430 8.48152 8.75246 9.03359 9.63990 11.11902 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.003964 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.286420 B = 7062.672954 C = 8625.089479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.131 3.869 3 C -0.152 4.152 4 N -0.553 5.553 5 C 0.221 3.779 6 C -0.511 4.511 7 H 0.053 0.947 8 C 0.070 3.930 9 N -0.890 5.890 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.511 3.489 15 O -0.566 6.566 16 C 0.494 3.506 17 O -0.445 6.445 18 N -0.632 5.632 19 C 0.013 3.987 20 C 0.056 3.944 21 N -0.289 5.289 22 N -0.369 5.369 23 C 0.161 3.839 24 C -0.165 4.165 25 C -0.164 4.164 26 C 0.010 3.990 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.261 0.739 37 H 0.414 0.586 38 H 0.211 0.789 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.001 -15.434 -4.998 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.028 3.972 3 C -0.210 4.210 4 N -0.283 5.283 5 C 0.103 3.897 6 C -0.550 4.550 7 H 0.071 0.929 8 C -0.133 4.133 9 N -0.529 5.529 10 Si 0.718 3.282 11 H -0.209 1.209 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.293 3.707 15 O -0.448 6.448 16 C 0.276 3.724 17 O -0.314 6.314 18 N -0.280 5.280 19 C -0.092 4.092 20 C -0.131 4.131 21 N -0.110 5.110 22 N -0.155 5.155 23 C 0.060 3.940 24 C -0.224 4.224 25 C -0.222 4.222 26 C -0.138 4.138 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.250 0.750 38 H 0.228 0.772 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.137 -15.603 -3.324 16.480 hybrid contribution 0.871 0.722 -0.887 1.438 sum 5.008 -14.881 -4.211 16.256 Atomic orbital electron populations 1.22135 0.95350 1.01815 1.02374 1.21032 0.93753 0.93852 0.88562 1.22045 1.01726 0.95105 1.02103 1.48381 1.49407 1.20054 1.10484 1.20072 0.97137 0.96068 0.76440 1.21205 1.00777 1.30808 1.02227 0.92870 1.24776 0.95807 0.96484 0.96191 1.69913 1.28414 1.43790 1.10742 0.86638 0.83504 0.80137 0.77946 1.20864 1.21201 1.20113 1.19692 0.80108 0.82678 0.88229 1.90632 1.57416 1.69488 1.27297 1.20289 0.80032 0.81252 0.90831 1.90804 1.48894 1.64882 1.26825 1.42511 1.59188 1.18762 1.07566 1.17765 1.09034 0.94240 0.88170 1.24727 0.99266 0.99738 0.89372 1.77399 1.17583 0.97093 1.18970 1.48364 1.47382 1.16401 1.03365 1.21156 0.92842 0.80328 0.99718 1.22252 0.93875 1.03033 1.03208 1.22195 1.02896 0.97131 0.99996 1.21572 1.05754 0.97234 0.89203 0.91542 0.92003 0.92906 0.89320 0.92446 0.92922 0.90512 0.94969 0.90690 0.92930 0.75034 0.77233 0.88082 0.91530 0.91890 0.90718 0.91436 0.91533 0.90213 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.26 37.16 0.34 -2.11 16 2 C 0.13 2.36 3.22 -67.94 -0.22 2.14 16 3 C -0.15 -2.65 8.66 37.15 0.32 -2.33 16 4 N -0.55 -11.71 2.38 -168.02 -0.40 -12.11 16 5 C 0.22 5.40 3.91 -5.19 -0.02 5.38 16 6 C -0.51 -13.69 7.47 -34.44 -0.26 -13.94 16 7 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 8 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 9 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.51 10.67 7.66 -11.64 -0.09 10.58 16 15 O -0.57 -11.76 15.82 5.49 0.09 -11.67 16 16 C 0.49 10.06 7.74 -11.64 -0.09 9.97 16 17 O -0.45 -10.37 9.54 5.45 0.05 -10.32 16 18 N -0.63 -10.50 5.45 -10.48 -0.06 -10.55 16 19 C 0.01 0.21 6.90 -83.96 -0.58 -0.37 16 20 C 0.06 1.04 10.84 -17.19 -0.19 0.85 16 21 N -0.29 -4.97 12.56 30.72 0.39 -4.58 16 22 N -0.37 -4.91 3.53 -54.65 -0.19 -5.10 16 23 C 0.16 1.47 3.93 -67.93 -0.27 1.20 16 24 C -0.17 -1.31 9.52 37.16 0.35 -0.95 16 25 C -0.16 -1.04 8.83 37.16 0.33 -0.71 16 26 C 0.01 0.13 10.63 -16.91 -0.18 -0.05 16 27 H 0.07 1.10 6.92 -51.93 -0.36 0.74 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.58 6.91 -51.93 -0.36 1.22 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.49 7.09 -51.93 -0.37 1.13 16 34 H 0.03 0.81 6.48 -51.93 -0.34 0.48 16 35 H 0.08 2.00 5.38 -51.93 -0.28 1.72 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.41 5.83 8.30 -40.82 -0.34 5.49 16 38 H 0.21 4.38 5.92 -52.49 -0.31 4.07 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.38 7.16 -51.93 -0.37 0.01 16 45 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 46 H 0.17 1.53 7.27 -52.49 -0.38 1.15 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -32.03 376.42 -6.25 -38.28 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.88 Total: 6.96 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -0.64 Total: 11.49 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.47 Total: -57.17 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.14 Total: -21.99 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.03 -6.25 -38.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566657411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.794 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds