Wall clock time and date at job start Tue Mar 31 2020 13:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47179 * 2 1 4 4 N 1.46494 * 109.46926 * 120.00467 * 2 1 3 5 5 C 1.46499 * 120.00084 * 294.93915 * 4 2 1 6 6 C 1.50703 * 109.46977 * 263.04553 * 5 4 2 7 7 H 1.07999 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00020 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99874 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46885 * 90.00212 * 10 8 6 12 12 H 1.48499 * 109.47323 * 210.00305 * 10 8 6 13 13 H 1.48503 * 109.46880 * 330.00524 * 10 8 6 14 14 C 1.34783 * 120.00302 * 114.93762 * 4 2 1 15 15 O 1.21361 * 119.99780 * 3.93991 * 14 4 2 16 16 C 1.49328 * 120.00120 * 183.93725 * 14 4 2 17 17 O 1.21399 * 119.99731 * 354.88304 * 16 14 4 18 18 N 1.34772 * 120.00192 * 174.88233 * 16 14 4 19 19 C 1.40478 * 120.00249 * 180.02562 * 18 16 14 20 20 C 1.40337 * 126.11536 * 0.02562 * 19 18 16 21 21 N 1.30822 * 108.20800 * 179.76075 * 20 19 18 22 22 N 1.40053 * 108.36786 * 0.37499 * 21 20 19 23 23 C 1.46505 * 125.99471 * 179.88285 * 22 21 20 24 24 C 1.53005 * 109.46713 * 264.68913 * 23 22 21 25 25 C 1.52998 * 109.46835 * 144.69281 * 23 22 21 26 26 C 1.35230 * 108.01290 * 359.62002 * 22 21 20 27 27 H 1.08995 * 109.47102 * 300.00119 * 1 2 3 28 28 H 1.09005 * 109.47044 * 59.99899 * 1 2 3 29 29 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46966 * 240.00539 * 2 1 3 31 31 H 1.09002 * 109.47178 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47646 * 300.00342 * 3 2 1 33 33 H 1.09003 * 109.46881 * 59.99862 * 3 2 1 34 34 H 1.09005 * 109.47025 * 23.04403 * 5 4 2 35 35 H 1.08998 * 109.47303 * 143.04573 * 5 4 2 36 36 H 0.96998 * 119.99819 * 179.97438 * 9 8 6 37 37 H 0.97009 * 119.99679 * 0.02562 * 18 16 14 38 38 H 1.07999 * 125.89377 * 0.02562 * 20 19 18 39 39 H 1.08991 * 109.46946 * 24.68828 * 23 22 21 40 40 H 1.09000 * 109.46752 * 60.00513 * 24 23 22 41 41 H 1.08994 * 109.47209 * 300.00432 * 24 23 22 42 42 H 1.08997 * 109.46704 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47587 * 299.99439 * 25 23 22 44 44 H 1.09000 * 109.47667 * 60.00238 * 25 23 22 45 45 H 1.09010 * 109.46977 * 179.97438 * 25 23 22 46 46 H 1.07999 * 126.18480 * 180.22785 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7581 -0.1290 2.5238 6 6 2.9585 0.6600 2.9795 7 1 3.8283 0.7352 2.3439 8 6 2.9462 1.2860 4.2080 9 7 1.8871 1.1941 4.9823 10 14 4.4343 2.2634 4.7732 11 1 4.2970 3.6743 4.3307 12 1 4.5244 2.2158 6.2547 13 1 5.6646 1.6772 4.1833 14 6 2.7069 -1.8430 1.0750 15 8 2.9844 -2.2712 -0.0261 16 6 3.1284 -2.5927 2.2958 17 8 2.9332 -2.1192 3.3964 18 7 3.7256 -3.7949 2.1756 19 6 4.1216 -4.5004 3.3240 20 6 3.9589 -4.0771 4.6521 21 7 4.4457 -5.0022 5.4386 22 7 4.9426 -6.0417 4.6424 23 6 5.5754 -7.2708 5.1274 24 6 7.0954 -7.0952 5.1297 25 6 5.1979 -8.4352 4.2096 26 6 4.7307 -5.7146 3.3475 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8898 33 1 1.6766 1.9562 0.8900 34 1 0.8887 0.5269 2.4769 35 1 1.5656 -0.9375 3.2291 36 1 1.8786 1.6342 5.8466 37 1 3.8819 -4.1730 1.2960 38 1 3.5057 -3.1497 4.9700 39 1 5.2324 -7.4806 6.1405 40 1 7.3642 -6.2656 5.7836 41 1 7.4384 -6.8852 4.1167 42 1 7.5661 -8.0094 5.4910 43 1 4.1152 -8.5603 4.2079 44 1 5.5410 -8.2254 3.1965 45 1 5.6691 -9.3496 4.5702 46 1 4.9973 -6.3108 2.4873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566657411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:00 Heat of formation + Delta-G solvation = 3.160677 kcal Electronic energy + Delta-G solvation = -28081.052653 eV Core-core repulsion = 24200.680779 eV Total energy + Delta-G solvation = -3880.371874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52613 -41.52899 -39.53922 -37.75619 -36.78348 -35.40546 -34.76649 -32.85669 -31.22862 -30.05845 -29.16715 -28.16977 -27.96881 -26.15472 -24.93091 -23.89451 -22.90086 -21.45325 -21.09174 -20.02981 -18.90998 -18.50145 -18.15756 -17.87679 -16.79855 -16.68722 -16.48709 -16.22639 -15.85277 -15.59525 -15.11988 -15.08242 -14.89351 -14.70688 -14.27272 -13.97769 -13.90857 -13.74353 -13.38539 -13.28166 -13.15570 -13.03956 -12.96570 -12.76015 -12.68106 -12.39840 -12.32739 -12.25717 -12.18183 -11.85689 -11.77317 -11.72623 -11.58785 -11.49832 -10.60062 -10.39665 -10.04409 -9.53776 -8.72716 -8.09431 -6.15881 0.40146 0.91440 1.29798 1.37410 1.40475 1.48327 1.69490 1.74183 2.40443 2.48296 2.73065 3.24397 3.50732 3.58320 3.86707 3.95664 4.03520 4.10170 4.14127 4.25412 4.41282 4.48580 4.53050 4.66381 4.68862 4.76481 4.83558 4.85102 4.93096 4.95261 5.00259 5.03618 5.14762 5.20829 5.26877 5.31060 5.48536 5.52119 5.63372 5.79429 5.84258 6.10243 6.18261 6.26172 6.40735 6.65262 6.88120 6.94186 7.21045 7.49016 8.98585 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.003964 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.286420 B = 7062.672954 C = 8625.089479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.123 3.877 3 C -0.144 4.144 4 N -0.560 5.560 5 C 0.243 3.757 6 C -0.508 4.508 7 H 0.042 0.958 8 C 0.023 3.977 9 N -0.920 5.920 10 Si 0.944 3.056 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.280 1.280 14 C 0.508 3.492 15 O -0.564 6.564 16 C 0.487 3.513 17 O -0.485 6.485 18 N -0.609 5.609 19 C -0.023 4.023 20 C 0.029 3.971 21 N -0.318 5.318 22 N -0.356 5.356 23 C 0.147 3.853 24 C -0.160 4.160 25 C -0.157 4.157 26 C 0.049 3.951 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.021 0.979 35 H 0.052 0.948 36 H 0.261 0.739 37 H 0.427 0.573 38 H 0.176 0.824 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 -17.637 -6.966 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.021 3.979 3 C -0.202 4.202 4 N -0.290 5.290 5 C 0.123 3.877 6 C -0.547 4.547 7 H 0.060 0.940 8 C -0.176 4.176 9 N -0.560 5.560 10 Si 0.770 3.230 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.205 1.205 14 C 0.290 3.710 15 O -0.446 6.446 16 C 0.269 3.731 17 O -0.357 6.357 18 N -0.258 5.258 19 C -0.128 4.128 20 C -0.156 4.156 21 N -0.141 5.141 22 N -0.141 5.141 23 C 0.047 3.953 24 C -0.218 4.218 25 C -0.215 4.215 26 C -0.100 4.100 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.266 0.734 38 H 0.193 0.807 39 H 0.118 0.882 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.124 0.876 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.548 -17.842 -5.319 19.428 hybrid contribution 0.523 1.194 -0.293 1.336 sum 6.071 -16.648 -5.612 18.588 Atomic orbital electron populations 1.22080 0.93299 1.02212 1.03259 1.21350 0.95453 0.93802 0.87328 1.21980 1.00581 0.94935 1.02720 1.48382 1.49800 1.20473 1.10321 1.19535 0.95757 0.94656 0.77726 1.21333 1.00900 1.30446 1.01974 0.93990 1.25442 0.98049 0.97639 0.96471 1.70013 1.30020 1.44942 1.11051 0.85785 0.80420 0.79473 0.77301 1.19406 1.21232 1.20489 1.19838 0.79927 0.82685 0.88510 1.90613 1.57377 1.69444 1.27142 1.20329 0.80382 0.82250 0.90139 1.90818 1.50939 1.66131 1.27830 1.42243 1.57644 1.17474 1.08486 1.17909 1.11844 0.95934 0.87064 1.24292 1.00756 0.99473 0.91086 1.77326 1.18711 0.98177 1.19854 1.48921 1.45445 1.16345 1.03413 1.21690 0.93476 0.79441 1.00646 1.22233 0.92792 1.03676 1.03111 1.22207 1.02712 0.96600 1.00019 1.22243 1.01980 0.95587 0.90237 0.93194 0.88486 0.92776 0.88530 0.94099 0.89023 0.93075 0.96091 0.93023 0.92995 0.73399 0.80728 0.88241 0.94000 0.91372 0.87586 0.92182 0.90156 0.87453 0.76171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.26 71.98 0.67 -3.82 16 2 C 0.12 4.33 3.22 44.99 0.15 4.48 16 3 C -0.14 -4.94 8.66 71.98 0.62 -4.32 16 4 N -0.56 -24.17 2.38 -803.86 -1.91 -26.08 16 5 C 0.24 12.41 3.91 85.63 0.33 12.74 16 6 C -0.51 -28.17 7.47 25.60 0.19 -27.98 16 7 H 0.04 2.38 7.81 -2.91 -0.02 2.35 16 8 C 0.02 1.32 5.46 84.66 0.46 1.78 16 9 N -0.92 -54.83 13.29 21.45 0.28 -54.54 16 10 Si 0.94 45.79 29.54 68.60 2.03 47.82 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 14 C 0.51 21.47 7.66 87.23 0.67 22.14 16 15 O -0.56 -22.93 15.82 -3.28 -0.05 -22.98 16 16 C 0.49 20.53 7.74 87.23 0.67 21.20 16 17 O -0.49 -24.10 9.54 -3.40 -0.03 -24.13 16 18 N -0.61 -20.18 5.45 -305.42 -1.67 -21.85 16 19 C -0.02 -0.75 6.90 37.71 0.26 -0.49 16 20 C 0.03 1.15 10.84 85.35 0.93 2.08 16 21 N -0.32 -11.20 12.56 -56.72 -0.71 -11.92 16 22 N -0.36 -8.91 3.53 -326.82 -1.15 -10.06 16 23 C 0.15 2.28 3.93 44.99 0.18 2.45 16 24 C -0.16 -2.06 9.52 71.98 0.69 -1.38 16 25 C -0.16 -1.32 8.83 71.98 0.64 -0.68 16 26 C 0.05 1.14 10.63 83.62 0.89 2.02 16 27 H 0.05 1.65 6.92 -2.39 -0.02 1.63 16 28 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 3.28 6.91 -2.39 -0.02 3.26 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 2.01 7.09 -2.39 -0.02 1.99 16 34 H 0.02 1.12 6.48 -2.38 -0.02 1.10 16 35 H 0.05 2.94 5.38 -2.43 -0.01 2.93 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.43 11.40 8.30 -92.70 -0.77 10.63 16 38 H 0.18 8.10 5.92 -2.91 -0.02 8.08 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 0.49 7.16 -2.39 -0.02 0.47 16 45 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 46 H 0.22 2.78 7.27 -2.91 -0.02 2.76 16 Total: -1.00 -73.85 376.42 4.35 -69.50 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.23 Total: 24.02 kcal Atomic # 6 Polarization: 22.89 SS G_CDS: 7.34 Total: 30.22 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -5.16 Total: -124.45 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -0.08 Total: -47.11 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.85 4.35 -69.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566657411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.662 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds