Wall clock time and date at job start Tue Mar 31 2020 12:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 H 1.08999 * 110.33077 * 52.74635 * 3 2 1 5 5 O 1.44688 * 110.35139 * 290.41367 * 3 2 1 6 6 C 1.44428 * 105.13885 * 200.67550 * 5 3 2 7 7 C 1.54483 * 104.89902 * 40.49479 * 6 5 3 8 8 C 1.54477 * 110.37308 * 175.00048 * 3 2 1 9 9 H 1.09000 * 110.51486 * 24.16264 * 8 3 2 10 10 N 1.46495 * 110.51116 * 261.45219 * 8 3 2 11 11 C 1.34774 * 120.00375 * 158.90559 * 10 8 3 12 12 O 1.21848 * 119.99929 * 0.02562 * 11 10 8 13 13 N 1.33836 * 120.00659 * 180.02562 * 11 10 8 14 14 C 1.32928 * 120.00287 * 180.02562 * 13 11 10 15 15 C 1.41208 * 126.38186 * 359.68193 * 14 13 11 16 16 C 1.34950 * 108.24666 * 179.88892 * 15 14 13 17 17 C 1.50699 * 125.52848 * 180.14061 * 16 15 14 18 18 N 1.36461 * 108.95055 * 0.38196 * 16 15 14 19 19 C 1.46496 * 125.85430 * 179.75931 * 18 16 15 20 20 C 1.50702 * 109.46900 * 84.97449 * 19 18 16 21 21 H 1.07996 * 120.00306 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99865 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99947 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47370 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47073 * 120.00415 * 24 22 20 27 27 H 1.48504 * 109.46924 * 240.00466 * 24 22 20 28 28 N 1.37420 * 126.37692 * 180.02562 * 14 13 11 29 29 H 0.97004 * 126.36788 * 359.95385 * 28 14 13 30 30 H 1.08999 * 109.46646 * 300.00477 * 1 2 3 31 31 H 1.08995 * 109.46616 * 60.00463 * 1 2 3 32 32 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47166 * 239.99601 * 2 1 3 34 34 H 1.09008 * 109.47093 * 119.99938 * 2 1 3 35 35 H 1.09002 * 110.37130 * 281.60836 * 6 5 3 36 36 H 1.08999 * 110.37385 * 159.38239 * 6 5 3 37 37 H 1.09005 * 110.50990 * 94.61536 * 7 6 5 38 38 H 1.09004 * 110.50692 * 217.18375 * 7 6 5 39 39 H 0.96999 * 120.00403 * 338.90534 * 10 8 3 40 40 H 1.08005 * 125.87667 * 0.02562 * 15 14 13 41 41 H 1.09006 * 109.47077 * 270.28129 * 17 16 15 42 42 H 1.08996 * 109.47161 * 30.28066 * 17 16 15 43 43 H 1.08995 * 109.47436 * 150.28220 * 17 16 15 44 44 H 1.09000 * 109.46972 * 204.97201 * 19 18 16 45 45 H 1.09002 * 109.47192 * 324.97728 * 19 18 16 46 46 H 0.97001 * 120.00110 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5830 2.0058 0.8135 5 8 1.7617 2.0746 -1.2714 6 6 2.6810 3.1858 -1.3494 7 6 4.0108 2.6418 -0.7819 8 6 3.5795 1.4685 0.1262 9 1 4.0079 0.5319 -0.2306 10 7 3.9765 1.7205 1.5136 11 6 5.2082 1.3726 1.9359 12 8 5.9918 0.8489 1.1635 13 7 5.5709 1.6022 3.2035 14 6 6.7859 1.2596 3.6198 15 6 7.7937 0.6435 2.8459 16 6 8.8773 0.4630 3.6297 17 6 10.1784 -0.1608 3.1949 18 7 8.6020 0.9319 4.8812 19 6 9.5176 0.9143 6.0248 20 6 10.4064 2.1303 5.9754 21 1 10.2997 2.8450 5.1728 22 6 11.3552 2.3309 6.9555 23 7 11.4848 1.4609 7.9332 24 14 12.4564 3.8385 6.8947 25 1 12.1119 4.6555 5.7035 26 1 12.2564 4.6475 8.1238 27 1 13.8761 3.4113 6.8088 28 7 7.2930 1.4329 4.8852 29 1 6.8310 1.8287 5.6407 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 2.3223 4.0182 -0.7438 36 1 2.8104 3.4992 -2.3853 37 1 4.6525 2.2853 -1.5877 38 1 4.5206 3.4101 -0.2005 39 1 3.3530 2.1376 2.1285 40 1 7.7120 0.3666 1.8051 41 1 10.1380 -1.2376 3.3593 42 1 10.3412 0.0392 2.1359 43 1 10.9971 0.2648 3.7751 44 1 8.9425 0.9219 6.9507 45 1 10.1309 0.0141 5.9853 46 1 12.1525 1.6018 8.6226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580285823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:00 Heat of formation + Delta-G solvation = 13.416257 kcal Electronic energy + Delta-G solvation = -26954.685264 eV Core-core repulsion = 23074.758105 eV Total energy + Delta-G solvation = -3879.927159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86799 -40.03322 -38.41204 -34.74489 -34.01903 -33.59639 -33.10438 -32.19692 -31.00110 -30.15875 -27.95266 -27.48659 -26.58621 -23.79772 -23.22416 -22.19985 -21.47024 -20.70184 -19.74450 -19.47239 -17.51385 -16.99328 -16.59395 -16.32045 -15.93770 -15.63678 -15.10302 -14.94642 -14.87493 -14.17880 -14.00251 -13.79598 -13.65704 -13.31358 -13.23606 -12.92408 -12.75795 -12.69751 -12.55944 -12.25093 -12.01732 -11.81547 -11.65695 -11.60548 -11.32402 -11.09204 -11.05589 -10.98654 -10.75021 -10.53281 -10.33972 -9.94107 -9.68732 -9.44154 -8.93409 -8.84561 -8.63809 -8.34732 -6.88625 -6.48827 -4.65934 1.77413 2.07216 3.03253 3.11850 3.13478 3.18332 3.44315 3.85390 4.05671 4.42628 4.44316 4.53252 4.78183 4.80674 4.87820 4.92957 5.02147 5.05997 5.14393 5.17790 5.40965 5.57141 5.59141 5.64236 5.70482 5.76235 5.81793 5.85563 5.93094 5.96545 6.02284 6.10435 6.15263 6.17140 6.40477 6.53310 6.58480 6.61266 6.77654 7.09366 7.37225 7.40375 7.51550 7.67054 7.87626 8.28917 8.42973 8.47538 9.04607 9.61897 10.51953 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002288 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.449230 B =12232.679901 C =12484.286675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.073 0.927 5 O -0.368 6.368 6 C 0.045 3.955 7 C -0.167 4.167 8 C 0.139 3.861 9 H 0.098 0.902 10 N -0.723 5.723 11 C 0.686 3.314 12 O -0.630 6.630 13 N -0.715 5.715 14 C 0.488 3.512 15 C -0.334 4.334 16 C 0.189 3.811 17 C -0.099 4.099 18 N -0.345 5.345 19 C 0.255 3.745 20 C -0.555 4.555 21 H 0.069 0.931 22 C 0.070 3.930 23 N -0.886 5.886 24 Si 0.908 3.092 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.278 1.278 28 N -0.472 5.472 29 H 0.444 0.556 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.182 0.818 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 -1.489 -10.957 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.091 0.909 5 O -0.287 6.287 6 C -0.032 4.032 7 C -0.206 4.206 8 C 0.032 3.968 9 H 0.116 0.884 10 N -0.377 5.377 11 C 0.385 3.615 12 O -0.512 6.512 13 N -0.480 5.480 14 C 0.236 3.764 15 C -0.367 4.367 16 C 0.063 3.937 17 C -0.157 4.157 18 N -0.131 5.131 19 C 0.138 3.862 20 C -0.593 4.593 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.734 3.266 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.204 1.204 28 N -0.194 5.194 29 H 0.291 0.709 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.230 0.770 40 H 0.199 0.801 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.597 -1.570 -10.682 16.590 hybrid contribution 0.696 1.185 0.627 1.510 sum -11.901 -0.385 -10.055 15.584 Atomic orbital electron populations 1.21730 0.95215 1.01588 1.02115 1.21581 0.96582 0.94059 1.03218 1.23292 0.93503 0.94890 0.87106 0.90942 1.89196 1.58464 1.44003 1.37000 1.23405 0.88431 0.89640 1.01745 1.23387 0.97832 0.99093 1.00333 1.22004 0.93416 0.99156 0.82242 0.88402 1.44679 1.15285 1.67140 1.10637 1.16595 0.81793 0.78242 0.84825 1.90733 1.51354 1.49644 1.59478 1.68025 1.16313 1.45321 1.18325 1.18669 0.89781 0.85617 0.82364 1.22180 0.93232 1.17685 1.03563 1.21284 0.97036 0.92155 0.83239 1.20639 0.91937 1.00415 1.02714 1.47863 1.01768 1.51403 1.12115 1.20004 0.85890 0.99843 0.80427 1.21434 1.18532 1.07723 1.11605 0.91240 1.24954 0.96904 0.97189 0.94468 1.69909 1.34507 1.35369 1.12527 0.86265 0.79984 0.81839 0.78478 1.19399 1.20537 1.20380 1.44393 1.04629 1.58471 1.11893 0.70917 0.92848 0.92143 0.92694 0.90881 0.90338 0.92359 0.89145 0.90198 0.89976 0.77009 0.80063 0.89910 0.89413 0.89073 0.93190 0.91520 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.85 37.16 0.37 -0.92 16 2 C -0.12 -1.16 5.56 -26.73 -0.15 -1.31 16 3 C 0.07 0.77 2.96 -25.96 -0.08 0.69 16 4 H 0.07 0.74 7.74 -51.93 -0.40 0.33 16 5 O -0.37 -4.29 11.15 -35.23 -0.39 -4.68 16 6 C 0.04 0.45 7.62 37.94 0.29 0.74 16 7 C -0.17 -2.02 6.87 -25.16 -0.17 -2.19 16 8 C 0.14 1.82 2.95 -66.37 -0.20 1.63 16 9 H 0.10 1.45 7.40 -51.93 -0.38 1.07 16 10 N -0.72 -10.84 5.08 -57.34 -0.29 -11.13 16 11 C 0.69 13.29 8.47 -87.76 -0.74 12.55 16 12 O -0.63 -13.58 12.98 5.06 0.07 -13.51 16 13 N -0.71 -14.16 10.59 -15.79 -0.17 -14.32 16 14 C 0.49 9.70 8.07 -155.29 -1.25 8.44 16 15 C -0.33 -6.49 9.41 -39.62 -0.37 -6.86 16 16 C 0.19 3.39 6.92 -81.70 -0.57 2.83 16 17 C -0.10 -1.40 9.92 36.01 0.36 -1.04 16 18 N -0.34 -6.60 3.63 -58.04 -0.21 -6.81 16 19 C 0.25 5.36 5.71 -5.20 -0.03 5.33 16 20 C -0.55 -13.13 9.39 -34.44 -0.32 -13.45 16 21 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 22 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -22.34 13.29 55.43 0.74 -21.60 16 24 Si 0.91 19.15 29.54 -169.99 -5.02 14.13 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 28 N -0.47 -8.65 7.38 31.33 0.23 -8.41 16 29 H 0.44 7.14 8.96 -182.54 -1.64 5.50 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.55 8.01 -51.93 -0.42 0.13 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.08 7.97 -51.93 -0.41 0.66 16 39 H 0.40 5.25 8.45 -40.82 -0.34 4.90 16 40 H 0.18 3.70 5.77 -52.48 -0.30 3.39 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.38 7.80 -51.93 -0.40 0.98 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.41 7.88 -51.93 -0.41 1.00 16 46 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -29.06 381.65 -10.75 -39.81 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -8.49 Total: 12.76 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.97 Total: 8.02 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.30 Total: -62.28 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.33 Total: -18.20 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.06 -10.75 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580285823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.229 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds