Wall clock time and date at job start Tue Mar 31 2020 12:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 H 1.08999 * 110.33077 * 52.74635 * 3 2 1 5 5 O 1.44688 * 110.35139 * 290.41367 * 3 2 1 6 6 C 1.44428 * 105.13885 * 200.67550 * 5 3 2 7 7 C 1.54483 * 104.89902 * 40.49479 * 6 5 3 8 8 C 1.54477 * 110.37308 * 175.00048 * 3 2 1 9 9 H 1.09000 * 110.51486 * 24.16264 * 8 3 2 10 10 N 1.46495 * 110.51116 * 261.45219 * 8 3 2 11 11 C 1.34774 * 120.00375 * 158.90559 * 10 8 3 12 12 O 1.21848 * 119.99929 * 0.02562 * 11 10 8 13 13 N 1.33836 * 120.00659 * 180.02562 * 11 10 8 14 14 C 1.32928 * 120.00287 * 180.02562 * 13 11 10 15 15 C 1.41208 * 126.38186 * 359.68193 * 14 13 11 16 16 C 1.34950 * 108.24666 * 179.88892 * 15 14 13 17 17 C 1.50699 * 125.52848 * 180.14061 * 16 15 14 18 18 N 1.36461 * 108.95055 * 0.38196 * 16 15 14 19 19 C 1.46496 * 125.85430 * 179.75931 * 18 16 15 20 20 C 1.50702 * 109.46900 * 84.97449 * 19 18 16 21 21 H 1.07996 * 120.00306 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99865 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99947 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47370 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47073 * 120.00415 * 24 22 20 27 27 H 1.48504 * 109.46924 * 240.00466 * 24 22 20 28 28 N 1.37420 * 126.37692 * 180.02562 * 14 13 11 29 29 H 0.97004 * 126.36788 * 359.95385 * 28 14 13 30 30 H 1.08999 * 109.46646 * 300.00477 * 1 2 3 31 31 H 1.08995 * 109.46616 * 60.00463 * 1 2 3 32 32 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47166 * 239.99601 * 2 1 3 34 34 H 1.09008 * 109.47093 * 119.99938 * 2 1 3 35 35 H 1.09002 * 110.37130 * 281.60836 * 6 5 3 36 36 H 1.08999 * 110.37385 * 159.38239 * 6 5 3 37 37 H 1.09005 * 110.50990 * 94.61536 * 7 6 5 38 38 H 1.09004 * 110.50692 * 217.18375 * 7 6 5 39 39 H 0.96999 * 120.00403 * 338.90534 * 10 8 3 40 40 H 1.08005 * 125.87667 * 0.02562 * 15 14 13 41 41 H 1.09006 * 109.47077 * 270.28129 * 17 16 15 42 42 H 1.08996 * 109.47161 * 30.28066 * 17 16 15 43 43 H 1.08995 * 109.47436 * 150.28220 * 17 16 15 44 44 H 1.09000 * 109.46972 * 204.97201 * 19 18 16 45 45 H 1.09002 * 109.47192 * 324.97728 * 19 18 16 46 46 H 0.97001 * 120.00110 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5830 2.0058 0.8135 5 8 1.7617 2.0746 -1.2714 6 6 2.6810 3.1858 -1.3494 7 6 4.0108 2.6418 -0.7819 8 6 3.5795 1.4685 0.1262 9 1 4.0079 0.5319 -0.2306 10 7 3.9765 1.7205 1.5136 11 6 5.2082 1.3726 1.9359 12 8 5.9918 0.8489 1.1635 13 7 5.5709 1.6022 3.2035 14 6 6.7859 1.2596 3.6198 15 6 7.7937 0.6435 2.8459 16 6 8.8773 0.4630 3.6297 17 6 10.1784 -0.1608 3.1949 18 7 8.6020 0.9319 4.8812 19 6 9.5176 0.9143 6.0248 20 6 10.4064 2.1303 5.9754 21 1 10.2997 2.8450 5.1728 22 6 11.3552 2.3309 6.9555 23 7 11.4848 1.4609 7.9332 24 14 12.4564 3.8385 6.8947 25 1 12.1119 4.6555 5.7035 26 1 12.2564 4.6475 8.1238 27 1 13.8761 3.4113 6.8088 28 7 7.2930 1.4329 4.8852 29 1 6.8310 1.8287 5.6407 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 2.3223 4.0182 -0.7438 36 1 2.8104 3.4992 -2.3853 37 1 4.6525 2.2853 -1.5877 38 1 4.5206 3.4101 -0.2005 39 1 3.3530 2.1376 2.1285 40 1 7.7120 0.3666 1.8051 41 1 10.1380 -1.2376 3.3593 42 1 10.3412 0.0392 2.1359 43 1 10.9971 0.2648 3.7751 44 1 8.9425 0.9219 6.9507 45 1 10.1309 0.0141 5.9853 46 1 12.1525 1.6018 8.6226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580285823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:59 Heat of formation + Delta-G solvation = -5.291519 kcal Electronic energy + Delta-G solvation = -26955.496494 eV Core-core repulsion = 23074.758105 eV Total energy + Delta-G solvation = -3880.738389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.36601 -41.10768 -39.74881 -36.20258 -35.40822 -34.74064 -34.44722 -33.65115 -32.47168 -31.39493 -28.96434 -28.79275 -28.17391 -25.09509 -24.48158 -23.52722 -22.46204 -21.82940 -21.15057 -20.87265 -19.04178 -18.69598 -17.86867 -17.62266 -16.86676 -16.75283 -16.55695 -16.43631 -16.32043 -15.64936 -15.46437 -14.86755 -14.57286 -14.39428 -14.33742 -14.22711 -14.10339 -14.07564 -13.76054 -13.65098 -13.32375 -13.20208 -12.96651 -12.75297 -12.53793 -12.45770 -12.31730 -12.02160 -11.91624 -11.77555 -11.70327 -11.21570 -11.08772 -10.80044 -10.77546 -10.30252 -9.94910 -9.89559 -8.54789 -8.21236 -6.55373 0.28010 0.57871 1.36628 1.42175 1.51568 1.62779 2.20996 2.31585 2.85830 2.94318 3.04497 3.12444 3.57174 3.70377 3.71083 3.95137 4.05799 4.17308 4.21880 4.26673 4.33963 4.40972 4.50724 4.61758 4.76938 4.77367 4.81631 4.82760 4.87938 4.90148 4.97456 5.01370 5.05009 5.11263 5.13093 5.20420 5.31681 5.42231 5.51811 5.62831 5.71277 5.88185 5.97755 6.16245 6.36119 6.59986 6.90504 6.99661 7.18337 8.12857 8.67065 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002288 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.449230 B =12232.679901 C =12484.286675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.079 3.921 4 H 0.086 0.914 5 O -0.377 6.377 6 C 0.049 3.951 7 C -0.166 4.166 8 C 0.135 3.865 9 H 0.077 0.923 10 N -0.708 5.708 11 C 0.675 3.325 12 O -0.657 6.657 13 N -0.721 5.721 14 C 0.474 3.526 15 C -0.348 4.348 16 C 0.196 3.804 17 C -0.097 4.097 18 N -0.351 5.351 19 C 0.268 3.732 20 C -0.560 4.560 21 H 0.056 0.944 22 C 0.032 3.968 23 N -0.912 5.912 24 Si 0.963 3.037 25 H -0.274 1.274 26 H -0.279 1.279 27 H -0.272 1.272 28 N -0.467 5.467 29 H 0.452 0.548 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.406 0.594 40 H 0.173 0.827 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.069 0.931 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 -1.056 -11.432 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C 0.020 3.980 4 H 0.103 0.897 5 O -0.296 6.296 6 C -0.027 4.027 7 C -0.205 4.205 8 C 0.028 3.972 9 H 0.095 0.905 10 N -0.363 5.363 11 C 0.374 3.626 12 O -0.542 6.542 13 N -0.486 5.486 14 C 0.221 3.779 15 C -0.380 4.380 16 C 0.070 3.930 17 C -0.154 4.154 18 N -0.138 5.138 19 C 0.151 3.849 20 C -0.598 4.598 21 H 0.075 0.925 22 C -0.171 4.171 23 N -0.550 5.550 24 Si 0.788 3.212 25 H -0.199 1.199 26 H -0.205 1.205 27 H -0.197 1.197 28 N -0.191 5.191 29 H 0.300 0.700 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.241 0.759 40 H 0.190 0.810 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.117 -1.124 -11.163 17.261 hybrid contribution 0.816 1.036 0.736 1.510 sum -12.301 -0.088 -10.428 16.126 Atomic orbital electron populations 1.21693 0.93899 1.02353 1.02230 1.21589 0.97683 0.93341 1.02867 1.23262 0.91574 0.95711 0.87408 0.89667 1.89195 1.58662 1.44538 1.37180 1.23490 0.86740 0.89387 1.03093 1.23334 0.99009 0.98323 0.99850 1.22113 0.95169 0.98695 0.81207 0.90496 1.44582 1.14011 1.66083 1.11591 1.16886 0.82796 0.78322 0.84580 1.90709 1.52497 1.50977 1.59986 1.68087 1.16408 1.45549 1.18595 1.18881 0.90127 0.85960 0.82899 1.22085 0.93895 1.18682 1.03338 1.21825 0.97957 0.90917 0.82255 1.20805 0.89400 1.01542 1.03702 1.47766 1.01978 1.51851 1.12202 1.19696 0.85649 0.98937 0.80599 1.21556 1.18970 1.08219 1.11097 0.92542 1.25574 0.97988 0.99270 0.94245 1.69967 1.35247 1.36654 1.13106 0.85426 0.78732 0.79048 0.78025 1.19851 1.20462 1.19718 1.44361 1.04366 1.58495 1.11851 0.69972 0.92176 0.92513 0.91676 0.91344 0.90660 0.90949 0.87268 0.90641 0.91098 0.75864 0.81001 0.87398 0.87337 0.89933 0.94013 0.91327 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.85 71.98 0.71 -1.54 16 2 C -0.12 -2.22 5.56 30.59 0.17 -2.05 16 3 C 0.08 1.62 2.96 31.10 0.09 1.71 16 4 H 0.09 1.56 7.74 -2.39 -0.02 1.54 16 5 O -0.38 -8.13 11.15 -148.98 -1.66 -9.79 16 6 C 0.05 0.90 7.62 72.49 0.55 1.46 16 7 C -0.17 -3.92 6.87 31.61 0.22 -3.70 16 8 C 0.13 3.50 2.95 46.01 0.14 3.64 16 9 H 0.08 2.34 7.40 -2.39 -0.02 2.32 16 10 N -0.71 -21.08 5.08 -453.49 -2.30 -23.38 16 11 C 0.68 26.37 8.47 179.35 1.52 27.89 16 12 O -0.66 -28.87 12.98 -4.82 -0.06 -28.94 16 13 N -0.72 -28.66 10.59 -322.54 -3.42 -32.08 16 14 C 0.47 18.90 8.07 133.95 1.08 19.98 16 15 C -0.35 -13.53 9.41 22.24 0.21 -13.32 16 16 C 0.20 6.92 6.92 41.08 0.28 7.20 16 17 C -0.10 -2.59 9.92 71.24 0.71 -1.88 16 18 N -0.35 -13.31 3.63 -337.55 -1.23 -14.54 16 19 C 0.27 11.18 5.71 85.63 0.49 11.67 16 20 C -0.56 -26.26 9.39 25.60 0.24 -26.02 16 21 H 0.06 2.77 7.81 -2.91 -0.02 2.74 16 22 C 0.03 1.51 5.46 84.65 0.46 1.97 16 23 N -0.91 -45.43 13.29 21.45 0.28 -45.14 16 24 Si 0.96 38.67 29.54 68.60 2.03 40.70 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 28 N -0.47 -17.09 7.38 -54.79 -0.40 -17.50 16 29 H 0.45 14.49 8.96 -213.27 -1.91 12.58 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.93 8.01 -2.39 -0.02 0.91 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.07 1.84 7.97 -2.38 -0.02 1.82 16 39 H 0.41 10.42 8.45 -92.71 -0.78 9.64 16 40 H 0.17 7.10 5.77 -2.91 -0.02 7.09 16 41 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.08 2.40 7.80 -2.39 -0.02 2.38 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 2.86 7.88 -2.39 -0.02 2.84 16 46 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 Total: -1.00 -61.16 381.65 -1.58 -62.75 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: -1.69 Total: 40.90 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 6.87 Total: 27.02 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -7.07 Total: -132.64 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -1.72 Total: -38.73 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -61.16 -1.58 -62.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580285823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.457 kcal (2) G-P(sol) polarization free energy of solvation -61.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds