Wall clock time and date at job start Tue Mar 31 2020 13:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47488 * 2 1 4 4 N 1.46504 * 109.46978 * 120.00218 * 2 1 3 5 5 C 1.34951 * 126.03463 * 275.02274 * 4 2 1 6 6 C 1.35320 * 107.74569 * 180.02562 * 5 4 2 7 7 C 1.39866 * 107.91898 * 359.97438 * 6 5 4 8 8 C 1.50697 * 125.89972 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47383 * 94.98014 * 8 7 6 10 10 C 1.34777 * 120.00105 * 180.02562 * 9 8 7 11 11 O 1.21589 * 119.99940 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00056 * 180.02562 * 10 9 8 13 13 C 1.47420 * 125.64471 * 359.69175 * 12 10 9 14 14 C 1.55139 * 104.71831 * 155.81625 * 13 12 10 15 15 C 1.55152 * 101.48550 * 37.29839 * 14 13 12 16 16 O 1.42900 * 110.72152 * 82.69155 * 15 14 13 17 17 C 1.50701 * 110.87094 * 205.89986 * 15 14 13 18 18 H 1.07995 * 120.00221 * 355.05554 * 17 15 14 19 19 C 1.37874 * 119.99862 * 175.06325 * 17 15 14 20 20 N 1.31511 * 120.00098 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99902 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47256 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47105 * 120.00252 * 21 19 17 24 24 H 1.48504 * 109.47208 * 239.99971 * 21 19 17 25 25 C 1.47019 * 125.64623 * 179.97438 * 12 10 9 26 26 N 1.30844 * 108.20609 * 0.02562 * 7 6 5 27 27 H 1.09008 * 109.46986 * 300.00098 * 1 2 3 28 28 H 1.09004 * 109.47339 * 59.99891 * 1 2 3 29 29 H 1.09001 * 109.47675 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46802 * 239.99356 * 2 1 3 31 31 H 1.09004 * 109.46920 * 300.00365 * 3 2 1 32 32 H 1.09002 * 109.47246 * 59.99539 * 3 2 1 33 33 H 1.08998 * 109.47038 * 179.97438 * 3 2 1 34 34 H 1.08004 * 126.12633 * 0.04038 * 5 4 2 35 35 H 1.07992 * 126.03988 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47327 * 214.98769 * 8 7 6 37 37 H 1.09003 * 109.46739 * 334.97974 * 8 7 6 38 38 H 0.96997 * 119.99714 * 0.02562 * 9 8 7 39 39 H 1.08996 * 110.36967 * 274.74146 * 13 12 10 40 40 H 1.08998 * 110.36988 * 37.07691 * 13 12 10 41 41 H 1.08995 * 111.19447 * 279.18850 * 14 13 12 42 42 H 1.09003 * 110.90309 * 155.27621 * 14 13 12 43 43 H 0.96703 * 113.99620 * 185.02331 * 16 15 14 44 44 H 0.97001 * 120.00130 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.88489 * 300.43812 * 25 12 10 46 46 H 1.09003 * 109.88314 * 61.45433 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1928 -0.1394 2.4155 6 6 2.6567 -1.1052 3.2422 7 6 2.7689 -2.2871 2.5029 8 6 3.2474 -3.6160 3.0283 9 7 2.0944 -4.4279 3.4257 10 6 2.2820 -5.6641 3.9287 11 8 3.4081 -6.1054 4.0531 12 7 1.2213 -6.4112 4.2938 13 6 -0.1914 -5.9995 4.2035 14 6 -0.9856 -7.3299 4.1277 15 6 -0.1711 -8.2314 5.0927 16 8 -0.5587 -8.0004 6.4486 17 6 -0.3335 -9.6861 4.7341 18 1 -1.0172 -9.9759 3.9500 19 6 0.3906 -10.6470 5.4072 20 7 1.2235 -10.2941 6.3619 21 14 0.1888 -12.4502 4.9632 22 1 -0.8007 -12.5815 3.8637 23 1 1.4953 -13.0004 4.5210 24 1 -0.2882 -13.2022 6.1516 25 6 1.2818 -7.7694 4.8534 26 7 2.3867 -2.0398 1.2762 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.9971 0.8883 2.6836 35 1 2.8969 -0.9847 4.2882 36 1 3.8061 -4.1349 2.2494 37 1 3.8927 -3.4542 3.8917 38 1 1.1961 -4.0756 3.3268 39 1 -0.4789 -5.4333 5.0895 40 1 -0.3573 -5.4074 3.3035 41 1 -0.9798 -7.7352 3.1159 42 1 -2.0059 -7.1948 4.4869 43 1 -0.0272 -8.4822 7.0971 44 1 1.7333 -10.9701 6.8352 45 1 1.7726 -8.4395 4.1477 46 1 1.8294 -7.7580 5.7958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591967914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:01 Heat of formation + Delta-G solvation = 1.857153 kcal Electronic energy + Delta-G solvation = -27181.965618 eV Core-core repulsion = 23301.537218 eV Total energy + Delta-G solvation = -3880.428399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51330 -39.53726 -37.41497 -36.32713 -34.26562 -34.17763 -32.17674 -30.88478 -30.19155 -29.73810 -27.86387 -27.77743 -26.57950 -24.65172 -22.97844 -22.45070 -20.47919 -20.05628 -19.64784 -19.32984 -17.65139 -17.27233 -16.97830 -15.97133 -15.44512 -15.27123 -14.98283 -14.84469 -14.54583 -14.19765 -14.00564 -13.85771 -13.47553 -13.28151 -13.00850 -12.86918 -12.80031 -12.72785 -12.48878 -12.22833 -11.98076 -11.89280 -11.62227 -11.60442 -11.35757 -11.01837 -10.79391 -10.75719 -10.61315 -10.42646 -10.12036 -9.73667 -9.40978 -9.26514 -8.79498 -8.76820 -8.63613 -8.26046 -7.68456 -6.23292 -4.31561 1.62995 2.16392 2.43267 3.23918 3.32769 3.36151 3.43401 3.81461 4.00971 4.31259 4.34849 4.49252 4.50849 4.54743 4.59712 4.92656 4.96273 5.04638 5.13119 5.20693 5.28269 5.43809 5.45365 5.52819 5.63305 5.66794 5.73730 5.77047 5.85267 5.96571 6.07333 6.16268 6.42000 6.56414 6.77401 6.78772 6.79796 6.95468 7.05748 7.32853 7.38211 7.52910 7.71192 7.78418 8.09320 8.59467 8.72680 9.19496 9.34629 9.43228 10.84587 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002408 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.109520 B =11625.565762 C =11964.930304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.164 4.164 4 N -0.365 5.365 5 C 0.051 3.949 6 C -0.256 4.256 7 C 0.058 3.942 8 C 0.224 3.776 9 N -0.746 5.746 10 C 0.718 3.282 11 O -0.596 6.596 12 N -0.630 5.630 13 C 0.104 3.896 14 C -0.116 4.116 15 C 0.247 3.753 16 O -0.585 6.585 17 C -0.536 4.536 18 H 0.066 0.934 19 C 0.070 3.930 20 N -0.893 5.893 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.123 3.877 26 N -0.276 5.276 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.171 0.829 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.394 0.606 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.382 0.618 44 H 0.269 0.731 45 H 0.064 0.936 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 23.828 -9.927 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.149 5.149 5 C -0.094 4.094 6 C -0.286 4.286 7 C -0.108 4.108 8 C 0.098 3.902 9 N -0.404 5.404 10 C 0.420 3.580 11 O -0.475 6.475 12 N -0.367 5.367 13 C -0.020 4.020 14 C -0.154 4.154 15 C 0.207 3.793 16 O -0.394 6.394 17 C -0.574 4.574 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C 0.001 3.999 26 N -0.099 5.099 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.188 0.812 35 H 0.167 0.833 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.228 0.772 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.232 0.768 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.462 23.435 -11.301 26.021 hybrid contribution 0.085 -0.647 0.830 1.055 sum -0.377 22.788 -10.472 25.082 Atomic orbital electron populations 1.22245 0.93467 1.03574 1.03057 1.21282 0.94922 0.92677 0.85945 1.22197 1.02360 0.93982 1.03674 1.48900 1.50217 1.07224 1.08519 1.22432 1.01432 0.99924 0.85653 1.21452 1.13241 0.92301 1.01562 1.22319 1.00472 0.96587 0.91420 1.19238 0.87642 0.83848 0.99453 1.45035 1.09286 1.15792 1.70276 1.15442 0.84125 0.79988 0.78482 1.90889 1.21876 1.72466 1.62307 1.47940 1.04408 1.18306 1.66023 1.22268 0.81998 0.98145 0.99559 1.22758 0.98795 0.93645 1.00166 1.19517 0.87071 0.92415 0.80301 1.86103 1.62811 1.72996 1.17479 1.21522 1.25169 0.90557 1.20176 0.91536 1.25074 0.93986 0.99854 0.94417 1.69708 1.25939 1.34509 1.23004 0.86359 0.78083 0.84060 0.78449 1.19634 1.20783 1.20789 1.22855 1.01129 0.77926 0.97959 1.77396 1.19711 0.92925 1.19876 0.91858 0.90439 0.91405 0.87934 0.89920 0.91497 0.91434 0.81151 0.83290 0.90455 0.89758 0.77192 0.92010 0.92747 0.90496 0.90686 0.76774 0.92079 0.91762 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 9.52 37.16 0.35 -0.58 16 2 C 0.15 1.00 3.93 -67.93 -0.27 0.74 16 3 C -0.16 -0.64 8.84 37.16 0.33 -0.32 16 4 N -0.37 -3.59 3.53 -54.86 -0.19 -3.78 16 5 C 0.05 0.44 10.59 -17.22 -0.18 0.26 16 6 C -0.26 -2.69 10.74 -40.01 -0.43 -3.12 16 7 C 0.06 0.75 6.59 -82.41 -0.54 0.21 16 8 C 0.22 3.24 6.23 -5.19 -0.03 3.21 16 9 N -0.75 -12.21 5.51 -66.41 -0.37 -12.58 16 10 C 0.72 15.17 8.49 -86.92 -0.74 14.43 16 11 O -0.60 -14.81 16.67 5.29 0.09 -14.72 16 12 N -0.63 -13.54 3.32 -176.10 -0.59 -14.12 16 13 C 0.10 1.89 6.58 -2.41 -0.02 1.87 16 14 C -0.12 -2.35 6.24 -24.46 -0.15 -2.50 16 15 C 0.25 6.07 0.85 -89.94 -0.08 6.00 16 16 O -0.59 -14.83 13.07 -35.23 -0.46 -15.29 16 17 C -0.54 -14.20 8.13 -34.44 -0.28 -14.48 16 18 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 19 C 0.07 1.85 5.27 -17.82 -0.09 1.76 16 20 N -0.89 -24.14 10.96 55.43 0.61 -23.53 16 21 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.12 3.08 5.23 -3.06 -0.02 3.07 16 26 N -0.28 -3.65 12.58 33.67 0.42 -3.23 16 27 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.21 7.16 -51.93 -0.37 -0.16 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.17 0.86 7.26 -52.48 -0.38 0.48 16 35 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.39 5.80 6.94 -40.82 -0.28 5.52 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.83 7.29 -51.93 -0.38 0.45 16 41 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.38 9.91 7.45 45.56 0.34 10.25 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.06 1.76 7.81 -51.93 -0.41 1.35 16 46 H 0.06 1.72 7.92 -51.93 -0.41 1.31 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -32.55 379.17 -8.44 -40.99 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -6.50 Total: 14.25 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -2.14 Total: 10.54 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.11 Total: -57.23 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.37 Total: -30.01 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.55 -8.44 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.846 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds