Wall clock time and date at job start Tue Mar 31 2020 13:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47488 * 2 1 4 4 N 1.46504 * 109.46978 * 120.00218 * 2 1 3 5 5 C 1.34951 * 126.03463 * 275.02274 * 4 2 1 6 6 C 1.35320 * 107.74569 * 180.02562 * 5 4 2 7 7 C 1.39866 * 107.91898 * 359.97438 * 6 5 4 8 8 C 1.50697 * 125.89972 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47383 * 94.98014 * 8 7 6 10 10 C 1.34777 * 120.00105 * 180.02562 * 9 8 7 11 11 O 1.21589 * 119.99940 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00056 * 180.02562 * 10 9 8 13 13 C 1.47420 * 125.64471 * 359.69175 * 12 10 9 14 14 C 1.55139 * 104.71831 * 155.81625 * 13 12 10 15 15 C 1.55152 * 101.48550 * 37.29839 * 14 13 12 16 16 O 1.42900 * 110.72152 * 82.69155 * 15 14 13 17 17 C 1.50701 * 110.87094 * 205.89986 * 15 14 13 18 18 H 1.07995 * 120.00221 * 355.05554 * 17 15 14 19 19 C 1.37874 * 119.99862 * 175.06325 * 17 15 14 20 20 N 1.31511 * 120.00098 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99902 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47256 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47105 * 120.00252 * 21 19 17 24 24 H 1.48504 * 109.47208 * 239.99971 * 21 19 17 25 25 C 1.47019 * 125.64623 * 179.97438 * 12 10 9 26 26 N 1.30844 * 108.20609 * 0.02562 * 7 6 5 27 27 H 1.09008 * 109.46986 * 300.00098 * 1 2 3 28 28 H 1.09004 * 109.47339 * 59.99891 * 1 2 3 29 29 H 1.09001 * 109.47675 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46802 * 239.99356 * 2 1 3 31 31 H 1.09004 * 109.46920 * 300.00365 * 3 2 1 32 32 H 1.09002 * 109.47246 * 59.99539 * 3 2 1 33 33 H 1.08998 * 109.47038 * 179.97438 * 3 2 1 34 34 H 1.08004 * 126.12633 * 0.04038 * 5 4 2 35 35 H 1.07992 * 126.03988 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47327 * 214.98769 * 8 7 6 37 37 H 1.09003 * 109.46739 * 334.97974 * 8 7 6 38 38 H 0.96997 * 119.99714 * 0.02562 * 9 8 7 39 39 H 1.08996 * 110.36967 * 274.74146 * 13 12 10 40 40 H 1.08998 * 110.36988 * 37.07691 * 13 12 10 41 41 H 1.08995 * 111.19447 * 279.18850 * 14 13 12 42 42 H 1.09003 * 110.90309 * 155.27621 * 14 13 12 43 43 H 0.96703 * 113.99620 * 185.02331 * 16 15 14 44 44 H 0.97001 * 120.00130 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.88489 * 300.43812 * 25 12 10 46 46 H 1.09003 * 109.88314 * 61.45433 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1928 -0.1394 2.4155 6 6 2.6567 -1.1052 3.2422 7 6 2.7689 -2.2871 2.5029 8 6 3.2474 -3.6160 3.0283 9 7 2.0944 -4.4279 3.4257 10 6 2.2820 -5.6641 3.9287 11 8 3.4081 -6.1054 4.0531 12 7 1.2213 -6.4112 4.2938 13 6 -0.1914 -5.9995 4.2035 14 6 -0.9856 -7.3299 4.1277 15 6 -0.1711 -8.2314 5.0927 16 8 -0.5587 -8.0004 6.4486 17 6 -0.3335 -9.6861 4.7341 18 1 -1.0172 -9.9759 3.9500 19 6 0.3906 -10.6470 5.4072 20 7 1.2235 -10.2941 6.3619 21 14 0.1888 -12.4502 4.9632 22 1 -0.8007 -12.5815 3.8637 23 1 1.4953 -13.0004 4.5210 24 1 -0.2882 -13.2022 6.1516 25 6 1.2818 -7.7694 4.8534 26 7 2.3867 -2.0398 1.2762 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.9971 0.8883 2.6836 35 1 2.8969 -0.9847 4.2882 36 1 3.8061 -4.1349 2.2494 37 1 3.8927 -3.4542 3.8917 38 1 1.1961 -4.0756 3.3268 39 1 -0.4789 -5.4333 5.0895 40 1 -0.3573 -5.4074 3.3035 41 1 -0.9798 -7.7352 3.1159 42 1 -2.0059 -7.1948 4.4869 43 1 -0.0272 -8.4822 7.0971 44 1 1.7333 -10.9701 6.8352 45 1 1.7726 -8.4395 4.1477 46 1 1.8294 -7.7580 5.7958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591967914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:01 Heat of formation + Delta-G solvation = -22.188793 kcal Electronic energy + Delta-G solvation = -27183.008328 eV Core-core repulsion = 23301.537218 eV Total energy + Delta-G solvation = -3881.471110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31173 -41.22076 -39.18100 -37.05945 -36.06753 -35.55434 -34.22022 -32.11999 -31.27333 -30.86271 -29.57653 -28.22977 -27.90397 -26.43127 -24.22662 -23.53289 -21.50170 -21.33560 -20.99872 -20.75887 -19.24152 -18.86891 -17.98780 -17.50824 -16.97420 -16.80714 -16.26274 -16.16354 -15.64000 -15.39265 -15.34425 -14.81806 -14.71984 -14.64119 -14.57281 -14.17052 -13.81502 -13.64113 -13.51632 -13.40675 -13.19481 -13.06098 -12.99379 -12.85869 -12.53571 -12.34897 -12.33638 -12.24628 -12.08733 -12.07666 -11.63312 -11.38876 -11.17146 -10.65400 -10.38390 -10.29822 -10.25101 -9.56029 -9.41731 -8.25246 -6.40899 0.79734 1.38982 1.42431 1.43966 1.53876 1.54695 2.02714 2.11718 2.38930 3.01438 3.12064 3.39199 3.70419 3.79278 3.91093 3.94630 4.05150 4.11395 4.16927 4.21484 4.37204 4.52741 4.57701 4.60466 4.66189 4.72611 4.78050 4.81706 4.83155 4.92912 5.05703 5.08466 5.12533 5.19469 5.23633 5.24079 5.34791 5.38995 5.50113 5.59103 5.75545 6.02391 6.14628 6.16460 6.65883 6.70183 7.01454 7.28681 7.36159 7.52229 8.81194 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002408 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.109520 B =11625.565762 C =11964.930304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 C -0.157 4.157 4 N -0.361 5.361 5 C 0.067 3.933 6 C -0.271 4.271 7 C 0.045 3.955 8 C 0.227 3.773 9 N -0.723 5.723 10 C 0.714 3.286 11 O -0.640 6.640 12 N -0.635 5.635 13 C 0.109 3.891 14 C -0.110 4.110 15 C 0.234 3.766 16 O -0.586 6.586 17 C -0.556 4.556 18 H 0.067 0.933 19 C 0.024 3.976 20 N -0.915 5.915 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.276 1.276 25 C 0.142 3.858 26 N -0.316 5.316 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.213 0.787 35 H 0.161 0.839 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.406 0.594 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.375 0.625 44 H 0.270 0.730 45 H 0.029 0.971 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 26.554 -11.014 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 C -0.215 4.215 4 N -0.144 5.144 5 C -0.079 4.079 6 C -0.301 4.301 7 C -0.120 4.120 8 C 0.101 3.899 9 N -0.381 5.381 10 C 0.416 3.584 11 O -0.523 6.523 12 N -0.371 5.371 13 C -0.013 4.013 14 C -0.148 4.148 15 C 0.194 3.806 16 O -0.394 6.394 17 C -0.594 4.594 18 H 0.085 0.915 19 C -0.176 4.176 20 N -0.554 5.554 21 Si 0.789 3.211 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.202 1.202 25 C 0.018 3.982 26 N -0.140 5.140 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.179 0.821 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.242 0.758 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.225 0.775 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.135 26.215 -12.421 29.087 hybrid contribution 0.598 -1.390 1.103 1.873 sum -1.537 24.825 -11.318 27.327 Atomic orbital electron populations 1.22213 0.92564 1.02435 1.04535 1.21633 0.95611 0.93889 0.84566 1.22188 1.01840 0.92033 1.05420 1.49225 1.49129 1.06192 1.09888 1.23031 0.99188 1.01188 0.84543 1.21673 1.14072 0.91857 1.02468 1.22037 1.01739 0.96245 0.92013 1.19218 0.86920 0.84584 0.99150 1.44853 1.10609 1.14072 1.68539 1.15625 0.83310 0.81034 0.78452 1.90852 1.23655 1.73711 1.64050 1.47880 1.06097 1.17224 1.65943 1.22415 0.79358 0.97565 1.01970 1.22753 0.99303 0.93563 0.99160 1.19702 0.87558 0.92787 0.80589 1.86092 1.62640 1.72826 1.17820 1.21842 1.25300 0.91916 1.20347 0.91499 1.25826 0.93715 1.03705 0.94404 1.69814 1.26385 1.35536 1.23651 0.85419 0.77834 0.79448 0.78403 1.18894 1.21070 1.20197 1.22369 1.00946 0.79441 0.95450 1.77306 1.21086 0.95355 1.20255 0.91211 0.88128 0.93790 0.88797 0.87870 0.90078 0.92195 0.77090 0.82112 0.91997 0.89464 0.75834 0.90870 0.88895 0.89958 0.89006 0.77549 0.92094 0.95234 0.95129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.52 71.98 0.69 -0.71 16 2 C 0.14 1.55 3.93 44.99 0.18 1.73 16 3 C -0.16 -0.69 8.84 71.98 0.64 -0.06 16 4 N -0.36 -6.36 3.53 -327.48 -1.15 -7.52 16 5 C 0.07 0.95 10.59 83.54 0.88 1.84 16 6 C -0.27 -5.18 10.74 21.99 0.24 -4.94 16 7 C 0.04 1.11 6.59 43.10 0.28 1.39 16 8 C 0.23 6.62 6.23 85.63 0.53 7.16 16 9 N -0.72 -23.42 5.51 -482.29 -2.66 -26.07 16 10 C 0.71 30.63 8.49 179.05 1.52 32.15 16 11 O -0.64 -33.02 16.67 -4.00 -0.07 -33.09 16 12 N -0.63 -27.45 3.32 -829.31 -2.76 -30.21 16 13 C 0.11 3.75 6.58 86.94 0.57 4.33 16 14 C -0.11 -4.31 6.24 32.06 0.20 -4.11 16 15 C 0.23 11.60 0.85 -10.35 -0.01 11.59 16 16 O -0.59 -30.00 13.07 -148.98 -1.95 -31.95 16 17 C -0.56 -29.75 8.13 25.60 0.21 -29.55 16 18 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 19 C 0.02 1.31 5.27 84.65 0.45 1.76 16 20 N -0.91 -50.85 10.96 21.45 0.24 -50.61 16 21 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.14 7.34 5.23 86.73 0.45 7.80 16 26 N -0.32 -8.13 12.58 -47.39 -0.60 -8.73 16 27 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.10 0.41 8.14 -2.38 -0.02 0.40 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 0.07 8.14 -2.38 -0.02 0.06 16 32 H 0.08 0.15 7.16 -2.39 -0.02 0.14 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.21 1.12 7.26 -2.91 -0.02 1.10 16 35 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.41 11.30 6.94 -92.71 -0.64 10.66 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.09 2.52 7.29 -2.39 -0.02 2.50 16 41 H 0.08 3.12 8.04 -2.39 -0.02 3.10 16 42 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 43 H 0.38 20.06 7.45 -74.06 -0.55 19.51 16 44 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 45 H 0.03 1.69 7.81 -2.39 -0.02 1.67 16 46 H 0.03 1.75 7.92 -2.39 -0.02 1.73 16 Total: -1.00 -73.43 379.17 -0.29 -73.72 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.20 Total: 39.09 kcal Atomic # 6 Polarization: 23.54 SS G_CDS: 6.83 Total: 30.36 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.93 Total: -123.14 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: -2.01 Total: -65.03 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -73.43 -0.29 -73.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.528 kcal (2) G-P(sol) polarization free energy of solvation -73.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds