Wall clock time and date at job start Tue Mar 31 2020 13:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47026 * 2 1 4 4 N 1.46503 * 109.47152 * 119.99677 * 2 1 3 5 5 C 1.34944 * 126.03581 * 275.00267 * 4 2 1 6 6 C 1.35316 * 107.74365 * 180.02562 * 5 4 2 7 7 C 1.39860 * 107.92274 * 359.97438 * 6 5 4 8 8 C 1.50699 * 125.90173 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46998 * 95.00392 * 8 7 6 10 10 C 1.34778 * 120.00094 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00083 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00138 * 179.97438 * 10 9 8 13 13 C 1.47028 * 125.64488 * 359.97438 * 12 10 9 14 14 C 1.54320 * 107.26701 * 178.99212 * 13 12 10 15 15 C 1.55153 * 102.94383 * 337.80525 * 14 13 12 16 16 O 1.42895 * 111.00660 * 277.38826 * 15 14 13 17 17 C 1.50702 * 111.00367 * 153.57571 * 15 14 13 18 18 H 1.08002 * 120.00299 * 3.18452 * 17 15 14 19 19 C 1.37884 * 119.99942 * 182.90010 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47463 * 125.62945 * 179.97438 * 12 10 9 26 26 N 1.30840 * 108.20298 * 0.26700 * 7 6 5 27 27 H 1.08992 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47059 * 300.00201 * 1 2 3 29 29 H 1.08998 * 109.47011 * 59.99852 * 1 2 3 30 30 H 1.08992 * 109.47209 * 239.99701 * 2 1 3 31 31 H 1.09006 * 109.46676 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46623 * 299.99839 * 3 2 1 33 33 H 1.08992 * 109.47370 * 59.99800 * 3 2 1 34 34 H 1.08001 * 126.12722 * 0.03133 * 5 4 2 35 35 H 1.08003 * 126.04223 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47451 * 335.00390 * 8 7 6 37 37 H 1.08998 * 109.47395 * 215.00179 * 8 7 6 38 38 H 0.96998 * 120.00213 * 359.97438 * 9 8 7 39 39 H 1.09000 * 109.88086 * 59.57636 * 13 12 10 40 40 H 1.09003 * 109.87956 * 298.40624 * 13 12 10 41 41 H 1.09004 * 110.71836 * 219.43859 * 14 13 12 42 42 H 1.09006 * 110.72351 * 96.16930 * 14 13 12 43 43 H 0.96695 * 114.00567 * 176.81707 * 16 15 14 44 44 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.34826 * 85.23635 * 25 12 10 46 46 H 1.09002 * 110.40574 * 322.89852 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1933 -0.1391 2.4154 6 6 2.6570 -1.1048 3.2421 7 6 2.7688 -2.2869 2.5030 8 6 3.2480 -3.6156 3.0284 9 7 2.0955 -4.4277 3.4265 10 6 2.2837 -5.6639 3.9295 11 8 3.4100 -6.1049 4.0534 12 7 1.2235 -6.4109 4.2963 13 6 -0.1859 -6.0024 4.2027 14 6 -1.0397 -7.1835 4.7103 15 6 -0.0929 -8.3994 4.5303 16 8 -0.1293 -8.8823 3.1859 17 6 -0.4327 -9.4974 5.5050 18 1 -1.2786 -9.3887 6.1676 19 6 0.3329 -10.6434 5.5467 20 7 1.3630 -10.7758 4.7398 21 14 -0.0928 -12.0077 6.7496 22 1 -1.2878 -11.6162 7.5394 23 1 -0.3829 -13.2562 5.9995 24 1 1.0536 -12.2357 7.6656 25 6 1.2853 -7.7730 4.8578 26 7 2.3913 -2.0385 1.2751 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.9980 0.8887 2.6833 35 1 2.8975 -0.9844 4.2881 36 1 3.8938 -3.4536 3.8914 37 1 3.8063 -4.1345 2.2491 38 1 1.1970 -4.0756 3.3288 39 1 -0.4393 -5.7802 3.1662 40 1 -0.3596 -5.1248 4.8254 41 1 -1.9369 -7.2999 4.1024 42 1 -1.2990 -7.0487 5.7605 43 1 0.4825 -9.6109 3.0130 44 1 1.9018 -11.5819 4.7695 45 1 1.4364 -7.7318 5.9365 46 1 2.0838 -8.3437 4.3835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591967916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:04 Heat of formation + Delta-G solvation = 1.370666 kcal Electronic energy + Delta-G solvation = -27213.501528 eV Core-core repulsion = 23333.052033 eV Total energy + Delta-G solvation = -3880.449495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50181 -39.50739 -37.37511 -36.30885 -34.24154 -34.13814 -32.13222 -30.88853 -30.19089 -29.77815 -27.85212 -27.77800 -26.56928 -24.66615 -22.96655 -22.38501 -20.46305 -20.04349 -19.58863 -19.35322 -17.64125 -17.27747 -16.96535 -15.90784 -15.37343 -15.25697 -14.96140 -14.86248 -14.46017 -14.34947 -13.98942 -13.84852 -13.51364 -13.28861 -12.97655 -12.93261 -12.74708 -12.71033 -12.41283 -12.25279 -11.91412 -11.88295 -11.60797 -11.57716 -11.36378 -11.01836 -10.78170 -10.73336 -10.53199 -10.42398 -10.12534 -9.72745 -9.41826 -9.30775 -8.78343 -8.74432 -8.64118 -8.29187 -7.59944 -6.23213 -4.32682 1.64535 2.17793 2.44629 3.22980 3.31849 3.35105 3.45623 3.84064 4.02458 4.30028 4.36229 4.50767 4.51700 4.56268 4.63615 4.93883 4.97605 5.03992 5.14370 5.21989 5.29789 5.46487 5.48390 5.53593 5.65046 5.68360 5.72134 5.75138 5.86617 5.98356 6.09905 6.18639 6.43067 6.57646 6.76784 6.80797 6.81563 6.94788 7.04737 7.30325 7.39355 7.54576 7.72446 7.79934 8.07945 8.61468 8.72215 9.21709 9.36559 9.47954 10.83998 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028298 B = 0.002399 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.237582 B =11667.102949 C =12099.342793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.164 4.164 4 N -0.365 5.365 5 C 0.051 3.949 6 C -0.257 4.257 7 C 0.058 3.942 8 C 0.224 3.776 9 N -0.745 5.745 10 C 0.719 3.281 11 O -0.597 6.597 12 N -0.627 5.627 13 C 0.106 3.894 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.584 6.584 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.892 5.892 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.113 3.887 26 N -0.275 5.275 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.171 0.829 35 H 0.149 0.851 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.394 0.606 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.270 0.730 45 H 0.057 0.943 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 24.548 -6.703 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.148 5.148 5 C -0.095 4.095 6 C -0.286 4.286 7 C -0.108 4.108 8 C 0.098 3.902 9 N -0.403 5.403 10 C 0.421 3.579 11 O -0.476 6.476 12 N -0.364 5.364 13 C -0.017 4.017 14 C -0.154 4.154 15 C 0.207 3.793 16 O -0.393 6.393 17 C -0.575 4.575 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.531 5.531 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.009 4.009 26 N -0.098 5.098 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.188 0.812 35 H 0.167 0.833 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.228 0.772 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.234 0.766 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.679 24.197 -8.033 25.504 hybrid contribution -0.069 -0.474 1.432 1.510 sum -0.748 23.722 -6.602 24.635 Atomic orbital electron populations 1.22242 0.93456 1.03601 1.03036 1.21287 0.94932 0.92665 0.85965 1.22197 1.02354 0.93993 1.03657 1.48904 1.50109 1.07312 1.08517 1.22424 1.01444 0.99896 0.85704 1.21441 1.13355 0.92276 1.01550 1.22320 1.00511 0.96574 0.91397 1.19238 0.87660 0.83857 0.99436 1.45021 1.09259 1.15815 1.70219 1.15449 0.84155 0.79950 0.78386 1.90886 1.21846 1.72411 1.62448 1.47900 1.04237 1.18420 1.65825 1.21912 0.82302 0.97869 0.99657 1.22591 0.98160 0.93879 1.00750 1.19626 0.88214 0.89743 0.81704 1.86077 1.66894 1.56064 1.30244 1.21514 1.14207 1.01487 1.20288 0.91485 1.25092 0.94179 0.98474 0.95569 1.69671 1.17245 1.28398 1.37798 0.86350 0.78460 0.81381 0.80692 1.19620 1.20806 1.20778 1.23141 1.02591 0.78088 0.97048 1.77412 1.19599 0.92950 1.19834 0.91379 0.91880 0.90434 0.87909 0.91441 0.89928 0.91510 0.81171 0.83325 0.89795 0.90441 0.77228 0.92761 0.93216 0.90852 0.90454 0.76564 0.92013 0.92469 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 9.52 37.16 0.35 -0.62 16 2 C 0.15 1.04 3.93 -67.92 -0.27 0.77 16 3 C -0.16 -0.67 8.84 37.16 0.33 -0.34 16 4 N -0.37 -3.66 3.53 -54.86 -0.19 -3.85 16 5 C 0.05 0.44 10.59 -17.22 -0.18 0.26 16 6 C -0.26 -2.70 10.74 -40.02 -0.43 -3.13 16 7 C 0.06 0.76 6.59 -82.41 -0.54 0.22 16 8 C 0.22 3.29 6.23 -5.19 -0.03 3.26 16 9 N -0.75 -12.41 5.51 -66.41 -0.37 -12.77 16 10 C 0.72 15.35 8.49 -86.91 -0.74 14.61 16 11 O -0.60 -14.91 16.60 5.29 0.09 -14.82 16 12 N -0.63 -13.55 3.33 -176.21 -0.59 -14.13 16 13 C 0.11 1.94 6.15 -3.06 -0.02 1.92 16 14 C -0.12 -2.34 6.13 -24.90 -0.15 -2.50 16 15 C 0.25 6.11 0.88 -89.63 -0.08 6.04 16 16 O -0.58 -15.29 13.17 -35.23 -0.46 -15.75 16 17 C -0.54 -14.09 8.25 -34.44 -0.28 -14.38 16 18 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 19 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 20 N -0.89 -24.20 10.69 55.43 0.59 -23.60 16 21 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.11 2.81 5.51 -2.52 -0.01 2.80 16 26 N -0.28 -3.73 12.58 33.67 0.42 -3.30 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.22 7.16 -51.93 -0.37 -0.15 16 34 H 0.17 0.87 7.26 -52.49 -0.38 0.49 16 35 H 0.15 1.33 8.06 -52.48 -0.42 0.90 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.39 5.93 7.45 -40.82 -0.30 5.62 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 43 H 0.38 10.38 7.24 45.56 0.33 10.71 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 46 H 0.08 2.33 7.48 -51.93 -0.39 1.94 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -32.63 379.74 -8.52 -41.15 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -6.57 Total: 15.17 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -2.15 Total: 10.66 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.13 Total: -57.66 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.38 Total: -30.58 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.63 -8.52 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.522 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds