Wall clock time and date at job start Tue Mar 31 2020 13:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47026 * 2 1 4 4 N 1.46503 * 109.47152 * 119.99677 * 2 1 3 5 5 C 1.34944 * 126.03581 * 275.00267 * 4 2 1 6 6 C 1.35316 * 107.74365 * 180.02562 * 5 4 2 7 7 C 1.39860 * 107.92274 * 359.97438 * 6 5 4 8 8 C 1.50699 * 125.90173 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46998 * 95.00392 * 8 7 6 10 10 C 1.34778 * 120.00094 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00083 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00138 * 179.97438 * 10 9 8 13 13 C 1.47028 * 125.64488 * 359.97438 * 12 10 9 14 14 C 1.54320 * 107.26701 * 178.99212 * 13 12 10 15 15 C 1.55153 * 102.94383 * 337.80525 * 14 13 12 16 16 O 1.42895 * 111.00660 * 277.38826 * 15 14 13 17 17 C 1.50702 * 111.00367 * 153.57571 * 15 14 13 18 18 H 1.08002 * 120.00299 * 3.18452 * 17 15 14 19 19 C 1.37884 * 119.99942 * 182.90010 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47463 * 125.62945 * 179.97438 * 12 10 9 26 26 N 1.30840 * 108.20298 * 0.26700 * 7 6 5 27 27 H 1.08992 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47059 * 300.00201 * 1 2 3 29 29 H 1.08998 * 109.47011 * 59.99852 * 1 2 3 30 30 H 1.08992 * 109.47209 * 239.99701 * 2 1 3 31 31 H 1.09006 * 109.46676 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46623 * 299.99839 * 3 2 1 33 33 H 1.08992 * 109.47370 * 59.99800 * 3 2 1 34 34 H 1.08001 * 126.12722 * 0.03133 * 5 4 2 35 35 H 1.08003 * 126.04223 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47451 * 335.00390 * 8 7 6 37 37 H 1.08998 * 109.47395 * 215.00179 * 8 7 6 38 38 H 0.96998 * 120.00213 * 359.97438 * 9 8 7 39 39 H 1.09000 * 109.88086 * 59.57636 * 13 12 10 40 40 H 1.09003 * 109.87956 * 298.40624 * 13 12 10 41 41 H 1.09004 * 110.71836 * 219.43859 * 14 13 12 42 42 H 1.09006 * 110.72351 * 96.16930 * 14 13 12 43 43 H 0.96695 * 114.00567 * 176.81707 * 16 15 14 44 44 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.34826 * 85.23635 * 25 12 10 46 46 H 1.09002 * 110.40574 * 322.89852 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1933 -0.1391 2.4154 6 6 2.6570 -1.1048 3.2421 7 6 2.7688 -2.2869 2.5030 8 6 3.2480 -3.6156 3.0284 9 7 2.0955 -4.4277 3.4265 10 6 2.2837 -5.6639 3.9295 11 8 3.4100 -6.1049 4.0534 12 7 1.2235 -6.4109 4.2963 13 6 -0.1859 -6.0024 4.2027 14 6 -1.0397 -7.1835 4.7103 15 6 -0.0929 -8.3994 4.5303 16 8 -0.1293 -8.8823 3.1859 17 6 -0.4327 -9.4974 5.5050 18 1 -1.2786 -9.3887 6.1676 19 6 0.3329 -10.6434 5.5467 20 7 1.3630 -10.7758 4.7398 21 14 -0.0928 -12.0077 6.7496 22 1 -1.2878 -11.6162 7.5394 23 1 -0.3829 -13.2562 5.9995 24 1 1.0536 -12.2357 7.6656 25 6 1.2853 -7.7730 4.8578 26 7 2.3913 -2.0385 1.2751 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.9980 0.8887 2.6833 35 1 2.8975 -0.9844 4.2881 36 1 3.8938 -3.4536 3.8914 37 1 3.8063 -4.1345 2.2491 38 1 1.1970 -4.0756 3.3288 39 1 -0.4393 -5.7802 3.1662 40 1 -0.3596 -5.1248 4.8254 41 1 -1.9369 -7.2999 4.1024 42 1 -1.2990 -7.0487 5.7605 43 1 0.4825 -9.6109 3.0130 44 1 1.9018 -11.5819 4.7695 45 1 1.4364 -7.7318 5.9365 46 1 2.0838 -8.3437 4.3835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591967916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:03 Heat of formation + Delta-G solvation = -22.801316 kcal Electronic energy + Delta-G solvation = -27214.549704 eV Core-core repulsion = 23333.052033 eV Total energy + Delta-G solvation = -3881.497671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31216 -41.19095 -39.13871 -37.05629 -36.04829 -35.54078 -34.17704 -32.16762 -31.28849 -30.86245 -29.57017 -28.23338 -27.89595 -26.43781 -24.16609 -23.52413 -21.50946 -21.29856 -20.98240 -20.75913 -19.27198 -18.84375 -17.98407 -17.36537 -16.92724 -16.90392 -16.24625 -16.15411 -15.65589 -15.45244 -15.39205 -14.80557 -14.74137 -14.60810 -14.55103 -14.00737 -13.84211 -13.70534 -13.50617 -13.31731 -13.21551 -13.05612 -13.00125 -12.84859 -12.51965 -12.34379 -12.30686 -12.18713 -12.08901 -12.07992 -11.62744 -11.39297 -11.20660 -10.65133 -10.40231 -10.30048 -10.22400 -9.55942 -9.33188 -8.23300 -6.40490 0.80296 1.40245 1.43812 1.45768 1.54509 1.56859 2.03547 2.14981 2.40063 3.02718 3.15217 3.39500 3.70262 3.80829 3.90897 3.94243 4.10195 4.10938 4.18137 4.22669 4.33522 4.52856 4.58805 4.62735 4.65869 4.77672 4.77843 4.81399 4.82906 4.92678 5.06782 5.08620 5.10595 5.18875 5.23778 5.29839 5.37058 5.41037 5.46861 5.59168 5.77959 6.04077 6.15406 6.16850 6.67178 6.70655 7.03371 7.30764 7.37661 7.54153 8.82517 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028298 B = 0.002399 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.237582 B =11667.102949 C =12099.342793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 C -0.156 4.156 4 N -0.361 5.361 5 C 0.067 3.933 6 C -0.270 4.270 7 C 0.044 3.956 8 C 0.227 3.773 9 N -0.724 5.724 10 C 0.714 3.286 11 O -0.641 6.641 12 N -0.632 5.632 13 C 0.108 3.892 14 C -0.109 4.109 15 C 0.231 3.769 16 O -0.590 6.590 17 C -0.553 4.553 18 H 0.071 0.929 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.283 1.283 25 C 0.127 3.873 26 N -0.319 5.319 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.213 0.787 35 H 0.163 0.837 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.375 0.625 44 H 0.269 0.731 45 H 0.044 0.956 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 27.657 -6.290 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 C -0.214 4.214 4 N -0.145 5.145 5 C -0.079 4.079 6 C -0.299 4.299 7 C -0.121 4.121 8 C 0.101 3.899 9 N -0.381 5.381 10 C 0.415 3.585 11 O -0.524 6.524 12 N -0.369 5.369 13 C -0.014 4.014 14 C -0.147 4.147 15 C 0.190 3.810 16 O -0.398 6.398 17 C -0.591 4.591 18 H 0.090 0.910 19 C -0.178 4.178 20 N -0.557 5.557 21 Si 0.792 3.208 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.209 1.209 25 C 0.003 3.997 26 N -0.143 5.143 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.181 0.819 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.241 0.759 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.224 0.776 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.537 27.362 -7.643 28.523 hybrid contribution 0.493 -1.346 1.215 1.879 sum -2.044 26.016 -6.428 26.877 Atomic orbital electron populations 1.22208 0.92573 1.02366 1.04577 1.21635 0.95611 0.93933 0.84573 1.22186 1.01836 0.91950 1.05449 1.49223 1.49058 1.06244 1.09936 1.23046 0.99168 1.01209 0.84527 1.21672 1.14064 0.91671 1.02523 1.22048 1.01748 0.96283 0.91982 1.19216 0.86961 0.84571 0.99125 1.44845 1.10542 1.14176 1.68529 1.15638 0.83392 0.80991 0.78438 1.90848 1.23633 1.73650 1.64223 1.47850 1.05854 1.17380 1.65787 1.22086 0.79727 0.98387 1.01180 1.22600 0.97826 0.92158 1.02127 1.19890 0.89296 0.91067 0.80697 1.86069 1.66580 1.55732 1.31434 1.21837 1.14323 1.02243 1.20726 0.91037 1.25879 0.94037 1.00740 0.97106 1.69796 1.18015 1.28837 1.39060 0.85368 0.78307 0.78503 0.78593 1.18580 1.20679 1.20880 1.22711 1.01504 0.79636 0.95809 1.77322 1.21123 0.95488 1.20358 0.93937 0.91104 0.88119 0.88933 0.92192 0.87885 0.89986 0.76999 0.81907 0.89209 0.92375 0.75927 0.91679 0.89216 0.89741 0.88929 0.77593 0.92134 0.93761 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.52 71.98 0.69 -0.82 16 2 C 0.14 1.64 3.93 44.99 0.18 1.82 16 3 C -0.16 -0.75 8.84 71.98 0.64 -0.11 16 4 N -0.36 -6.59 3.53 -327.48 -1.15 -7.74 16 5 C 0.07 0.96 10.59 83.54 0.88 1.85 16 6 C -0.27 -5.14 10.74 21.99 0.24 -4.91 16 7 C 0.04 1.13 6.59 43.10 0.28 1.41 16 8 C 0.23 6.78 6.23 85.63 0.53 7.31 16 9 N -0.72 -23.98 5.51 -482.29 -2.66 -26.64 16 10 C 0.71 31.00 8.49 179.05 1.52 32.52 16 11 O -0.64 -33.36 16.60 -3.99 -0.07 -33.42 16 12 N -0.63 -27.42 3.33 -829.66 -2.76 -30.18 16 13 C 0.11 3.74 6.15 86.73 0.53 4.27 16 14 C -0.11 -4.23 6.13 31.78 0.19 -4.04 16 15 C 0.23 11.48 0.88 -10.15 -0.01 11.47 16 16 O -0.59 -31.54 13.17 -148.98 -1.96 -33.50 16 17 C -0.55 -29.14 8.25 25.60 0.21 -28.92 16 18 H 0.07 3.62 7.78 -2.91 -0.02 3.59 16 19 C 0.02 1.22 5.29 84.66 0.45 1.67 16 20 N -0.92 -51.31 10.69 21.45 0.23 -51.08 16 21 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.13 6.50 5.51 86.84 0.48 6.98 16 26 N -0.32 -8.52 12.58 -47.39 -0.60 -9.12 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.08 0.17 7.16 -2.39 -0.02 0.15 16 34 H 0.21 1.11 7.26 -2.91 -0.02 1.09 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.41 11.67 7.45 -92.71 -0.69 10.98 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 42 H 0.09 3.28 8.03 -2.38 -0.02 3.26 16 43 H 0.37 21.13 7.24 -74.06 -0.54 20.59 16 44 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 45 H 0.04 2.32 8.03 -2.39 -0.02 2.30 16 46 H 0.04 2.42 7.48 -2.39 -0.02 2.40 16 Total: -1.00 -73.95 379.74 -0.36 -74.31 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.23 Total: 42.48 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 6.81 Total: 30.49 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -6.94 Total: -124.76 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: -2.03 Total: -66.92 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -73.95 -0.36 -74.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.506 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds