Wall clock time and date at job start Tue Mar 31 2020 14:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47012 * 2 1 4 4 O 1.42904 * 109.47386 * 240.00151 * 2 1 3 5 5 C 1.35673 * 116.99544 * 269.99844 * 4 2 1 6 6 C 1.38988 * 120.02124 * 179.72457 * 5 4 2 7 7 N 1.32071 * 120.08578 * 179.75710 * 6 5 4 8 8 C 1.32069 * 120.13375 * 0.51980 * 7 6 5 9 9 C 1.39045 * 120.05017 * 359.73135 * 8 7 6 10 10 N 1.39387 * 120.04139 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00020 * 174.60048 * 10 9 8 12 12 O 1.21573 * 119.99867 * 5.03755 * 11 10 9 13 13 N 1.34774 * 119.99885 * 185.04270 * 11 10 9 14 14 C 1.46503 * 119.99863 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46871 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47403 * 299.99829 * 15 14 13 17 17 C 1.52997 * 109.47316 * 60.00018 * 15 14 13 18 18 C 1.50709 * 109.46879 * 180.02562 * 15 14 13 19 19 H 1.07996 * 119.99903 * 358.33868 * 18 15 14 20 20 C 1.37876 * 119.99892 * 178.34337 * 18 15 14 21 21 N 1.31524 * 120.00230 * 2.54755 * 20 18 15 22 22 Si 1.86800 * 120.00082 * 182.54744 * 20 18 15 23 23 H 1.48498 * 109.47014 * 94.99304 * 22 20 18 24 24 H 1.48493 * 109.47060 * 214.99448 * 22 20 18 25 25 H 1.48505 * 109.46939 * 334.99571 * 22 20 18 26 26 N 1.32560 * 120.02798 * 359.97438 * 5 4 2 27 27 H 1.09000 * 109.47500 * 300.00213 * 1 2 3 28 28 H 1.09004 * 109.46758 * 60.00448 * 1 2 3 29 29 H 1.09003 * 109.46780 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47236 * 119.99605 * 2 1 3 31 31 H 1.09000 * 109.47162 * 59.99580 * 3 2 1 32 32 H 1.08995 * 109.46788 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46797 * 299.99874 * 3 2 1 34 34 H 1.08002 * 119.96123 * 0.02562 * 6 5 4 35 35 H 1.08007 * 119.97108 * 179.75412 * 8 7 6 36 36 H 0.96995 * 119.99915 * 354.60758 * 10 9 8 37 37 H 0.97001 * 120.00019 * 359.97438 * 13 11 10 38 38 H 1.08991 * 109.47141 * 299.99173 * 14 13 11 39 39 H 1.09004 * 109.47055 * 59.99741 * 14 13 11 40 40 H 1.08997 * 109.47071 * 55.04144 * 16 15 14 41 41 H 1.09004 * 109.46686 * 175.04076 * 16 15 14 42 42 H 1.08995 * 109.47184 * 295.03892 * 16 15 14 43 43 H 1.09005 * 109.47154 * 59.99737 * 17 15 14 44 44 H 1.08996 * 109.47552 * 179.97438 * 17 15 14 45 45 H 1.08999 * 109.47473 * 299.99964 * 17 15 14 46 46 H 0.96991 * 119.99835 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2117 -2.0109 -1.0652 6 6 2.6690 -2.7296 -2.1634 7 7 2.8739 -4.0306 -2.0646 8 6 2.6354 -4.6546 -0.9253 9 6 2.1728 -3.9420 0.1754 10 7 1.9207 -4.6010 1.3775 11 6 1.5774 -3.8956 2.4735 12 8 1.3982 -2.6959 2.3928 13 7 1.4328 -4.5204 3.6589 14 6 1.0591 -3.7538 4.8501 15 6 0.9622 -4.6949 6.0525 16 6 -0.0987 -5.7631 5.7799 17 6 2.3164 -5.3684 6.2835 18 6 0.5772 -3.9064 7.2778 19 1 0.4438 -2.8368 7.2117 20 6 0.3953 -4.5507 8.4831 21 7 0.6065 -5.8456 8.5752 22 14 -0.1511 -3.5844 9.9856 23 1 -1.6275 -3.6715 10.1200 24 1 0.4907 -4.1510 11.1988 25 1 0.2489 -2.1626 9.8320 26 7 1.9717 -2.6337 0.0801 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 2.8611 -2.2229 -3.0977 35 1 2.8001 -5.7193 -0.8486 36 1 1.9923 -5.5671 1.4253 37 1 1.5755 -5.4777 3.7232 38 1 1.8147 -2.9926 5.0442 39 1 0.0941 -3.2743 4.6857 40 1 0.1326 -6.2749 4.8458 41 1 -0.1063 -6.4844 6.5972 42 1 -1.0781 -5.2911 5.7028 43 1 3.0723 -4.6074 6.4778 44 1 2.2475 -6.0385 7.1404 45 1 2.5945 -5.9387 5.3973 46 1 0.4782 -6.2988 9.4230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594141999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:12 Heat of formation + Delta-G solvation = -11.795137 kcal Electronic energy + Delta-G solvation = -27649.599858 eV Core-core repulsion = 23768.579451 eV Total energy + Delta-G solvation = -3881.020407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53964 -39.83467 -38.72706 -36.69792 -35.10178 -33.88309 -33.43562 -32.75636 -30.94278 -29.66318 -27.32837 -25.92502 -25.79450 -25.30996 -24.67163 -23.65241 -21.72556 -20.78803 -19.09415 -18.92981 -18.32752 -17.19119 -16.88008 -16.59587 -16.13761 -15.86605 -15.30826 -14.80752 -14.72436 -14.47170 -14.29137 -13.74164 -13.61573 -13.12242 -13.03271 -12.93950 -12.59508 -12.40504 -12.25953 -12.09137 -11.73395 -11.66139 -11.40396 -11.26362 -11.17756 -10.90980 -10.72679 -10.72045 -10.44348 -10.29299 -10.12482 -9.83720 -9.69423 -9.42767 -9.07493 -8.84538 -8.58290 -8.42334 -8.21210 -6.07606 -4.17182 0.79209 1.11024 2.43766 2.81594 3.24816 3.30628 3.32592 3.36410 3.78031 3.92200 4.22966 4.31668 4.36040 4.63079 4.81534 4.92179 5.05579 5.15238 5.19896 5.26733 5.48969 5.58945 5.67724 5.77153 5.89651 6.01824 6.06022 6.16214 6.26343 6.36497 6.40325 6.59613 6.71448 6.74653 6.89487 6.93046 6.95499 7.08109 7.25640 7.31217 7.49554 7.64580 7.70106 7.93939 8.04444 8.20716 8.33136 8.77105 8.84335 9.48872 10.94323 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.002936 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.762239 B = 9534.565457 C =10815.971938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.076 3.924 3 C -0.148 4.148 4 O -0.296 6.296 5 C 0.315 3.685 6 C -0.014 4.014 7 N -0.376 5.376 8 C -0.036 4.036 9 C 0.388 3.612 10 N -0.666 5.666 11 C 0.686 3.314 12 O -0.537 6.537 13 N -0.726 5.726 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 N -0.489 5.489 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.416 0.584 37 H 0.395 0.605 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.005 0.995 41 H 0.083 0.917 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.085 0.915 45 H 0.005 0.995 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 3.273 -17.973 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 C -0.205 4.205 4 O -0.201 6.201 5 C 0.131 3.869 6 C -0.178 4.178 7 N -0.090 5.090 8 C -0.201 4.201 9 C 0.152 3.848 10 N -0.315 5.315 11 C 0.385 3.615 12 O -0.409 6.409 13 N -0.381 5.381 14 C 0.028 3.972 15 C 0.056 3.944 16 C -0.187 4.187 17 C -0.188 4.188 18 C -0.546 4.546 19 H 0.076 0.924 20 C -0.134 4.134 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 N -0.225 5.225 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.253 0.747 37 H 0.230 0.770 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.024 0.976 41 H 0.102 0.898 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.024 0.976 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.082 4.469 -17.930 18.734 hybrid contribution -0.349 -0.531 1.247 1.400 sum 2.733 3.938 -16.683 17.358 Atomic orbital electron populations 1.22124 0.94659 1.02892 1.02166 1.22526 0.94690 0.92697 0.88125 1.21896 1.01830 0.93910 1.02884 1.86302 1.79402 1.15044 1.39333 1.20856 0.90296 0.85957 0.89776 1.22599 1.06285 0.89980 0.98928 1.68308 1.09133 1.08140 1.23411 1.22884 1.06904 1.01593 0.88727 1.18922 0.91153 0.88313 0.86431 1.42935 1.70617 1.10672 1.07238 1.16173 0.79256 0.85794 0.80281 1.90978 1.54129 1.11929 1.83828 1.45606 1.73047 1.12108 1.07324 1.21658 0.98884 0.94438 0.82227 1.18372 0.93046 0.92247 0.90765 1.21817 0.98074 1.00213 0.98568 1.21834 0.96977 0.99969 0.99990 1.20973 1.47008 0.93918 0.92683 0.92367 1.24875 0.94981 0.94939 0.98647 1.69815 1.48917 1.08168 1.25507 0.86552 0.78733 0.80271 0.82309 1.20746 1.21254 1.19838 1.68001 1.21399 1.08835 1.24230 0.90934 0.92524 0.92075 0.87735 0.90337 0.91956 0.91864 0.81024 0.81247 0.74659 0.77005 0.92692 0.92669 0.97596 0.89820 0.95215 0.95419 0.89612 0.97589 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.53 37.16 0.35 -1.61 16 2 C 0.08 0.97 3.12 -26.73 -0.08 0.88 16 3 C -0.15 -1.46 9.56 37.16 0.36 -1.11 16 4 O -0.30 -3.86 9.77 -18.72 -0.18 -4.05 16 5 C 0.32 4.30 7.46 -16.96 -0.13 4.17 16 6 C -0.01 -0.17 11.16 -17.17 -0.19 -0.36 16 7 N -0.38 -4.44 10.48 -12.76 -0.13 -4.57 16 8 C -0.04 -0.39 11.07 -17.15 -0.19 -0.58 16 9 C 0.39 5.14 7.42 -154.41 -1.15 4.00 16 10 N -0.67 -8.23 5.40 -15.74 -0.08 -8.31 16 11 C 0.69 11.35 8.52 -86.92 -0.74 10.61 16 12 O -0.54 -10.78 14.52 5.30 0.08 -10.70 16 13 N -0.73 -11.94 4.92 -65.23 -0.32 -12.26 16 14 C 0.15 3.04 4.50 -4.04 -0.02 3.02 16 15 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 16 C -0.13 -2.78 8.05 37.16 0.30 -2.48 16 17 C -0.13 -2.80 8.09 37.16 0.30 -2.50 16 18 C -0.51 -12.91 8.01 -34.44 -0.28 -13.18 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.07 1.72 5.14 -17.82 -0.09 1.63 16 21 N -0.89 -23.05 9.42 55.43 0.52 -22.52 16 22 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 N -0.49 -7.51 6.38 -12.25 -0.08 -7.58 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.66 6.89 -51.93 -0.36 1.30 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.42 3.42 8.73 -40.82 -0.36 3.06 16 37 H 0.39 5.67 6.18 -40.82 -0.25 5.41 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.01 0.09 6.74 -51.93 -0.35 -0.26 16 41 H 0.08 2.00 6.19 -51.93 -0.32 1.68 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 2.06 6.11 -51.93 -0.32 1.75 16 45 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 46 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -29.79 375.19 -8.13 -37.92 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.93 Total: 7.45 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -1.63 Total: 3.67 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.10 Total: -55.25 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.11 Total: -14.75 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.79 -8.13 -37.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594141999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.124 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds