Wall clock time and date at job start Tue Mar 31 2020 14:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47012 * 2 1 4 4 O 1.42904 * 109.47386 * 240.00151 * 2 1 3 5 5 C 1.35673 * 116.99544 * 269.99844 * 4 2 1 6 6 C 1.38988 * 120.02124 * 179.72457 * 5 4 2 7 7 N 1.32071 * 120.08578 * 179.75710 * 6 5 4 8 8 C 1.32069 * 120.13375 * 0.51980 * 7 6 5 9 9 C 1.39045 * 120.05017 * 359.73135 * 8 7 6 10 10 N 1.39387 * 120.04139 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00020 * 174.60048 * 10 9 8 12 12 O 1.21573 * 119.99867 * 5.03755 * 11 10 9 13 13 N 1.34774 * 119.99885 * 185.04270 * 11 10 9 14 14 C 1.46503 * 119.99863 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46871 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47403 * 299.99829 * 15 14 13 17 17 C 1.52997 * 109.47316 * 60.00018 * 15 14 13 18 18 C 1.50709 * 109.46879 * 180.02562 * 15 14 13 19 19 H 1.07996 * 119.99903 * 358.33868 * 18 15 14 20 20 C 1.37876 * 119.99892 * 178.34337 * 18 15 14 21 21 N 1.31524 * 120.00230 * 2.54755 * 20 18 15 22 22 Si 1.86800 * 120.00082 * 182.54744 * 20 18 15 23 23 H 1.48498 * 109.47014 * 94.99304 * 22 20 18 24 24 H 1.48493 * 109.47060 * 214.99448 * 22 20 18 25 25 H 1.48505 * 109.46939 * 334.99571 * 22 20 18 26 26 N 1.32560 * 120.02798 * 359.97438 * 5 4 2 27 27 H 1.09000 * 109.47500 * 300.00213 * 1 2 3 28 28 H 1.09004 * 109.46758 * 60.00448 * 1 2 3 29 29 H 1.09003 * 109.46780 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47236 * 119.99605 * 2 1 3 31 31 H 1.09000 * 109.47162 * 59.99580 * 3 2 1 32 32 H 1.08995 * 109.46788 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46797 * 299.99874 * 3 2 1 34 34 H 1.08002 * 119.96123 * 0.02562 * 6 5 4 35 35 H 1.08007 * 119.97108 * 179.75412 * 8 7 6 36 36 H 0.96995 * 119.99915 * 354.60758 * 10 9 8 37 37 H 0.97001 * 120.00019 * 359.97438 * 13 11 10 38 38 H 1.08991 * 109.47141 * 299.99173 * 14 13 11 39 39 H 1.09004 * 109.47055 * 59.99741 * 14 13 11 40 40 H 1.08997 * 109.47071 * 55.04144 * 16 15 14 41 41 H 1.09004 * 109.46686 * 175.04076 * 16 15 14 42 42 H 1.08995 * 109.47184 * 295.03892 * 16 15 14 43 43 H 1.09005 * 109.47154 * 59.99737 * 17 15 14 44 44 H 1.08996 * 109.47552 * 179.97438 * 17 15 14 45 45 H 1.08999 * 109.47473 * 299.99964 * 17 15 14 46 46 H 0.96991 * 119.99835 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2117 -2.0109 -1.0652 6 6 2.6690 -2.7296 -2.1634 7 7 2.8739 -4.0306 -2.0646 8 6 2.6354 -4.6546 -0.9253 9 6 2.1728 -3.9420 0.1754 10 7 1.9207 -4.6010 1.3775 11 6 1.5774 -3.8956 2.4735 12 8 1.3982 -2.6959 2.3928 13 7 1.4328 -4.5204 3.6589 14 6 1.0591 -3.7538 4.8501 15 6 0.9622 -4.6949 6.0525 16 6 -0.0987 -5.7631 5.7799 17 6 2.3164 -5.3684 6.2835 18 6 0.5772 -3.9064 7.2778 19 1 0.4438 -2.8368 7.2117 20 6 0.3953 -4.5507 8.4831 21 7 0.6065 -5.8456 8.5752 22 14 -0.1511 -3.5844 9.9856 23 1 -1.6275 -3.6715 10.1200 24 1 0.4907 -4.1510 11.1988 25 1 0.2489 -2.1626 9.8320 26 7 1.9717 -2.6337 0.0801 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 2.8611 -2.2229 -3.0977 35 1 2.8001 -5.7193 -0.8486 36 1 1.9923 -5.5671 1.4253 37 1 1.5755 -5.4777 3.7232 38 1 1.8147 -2.9926 5.0442 39 1 0.0941 -3.2743 4.6857 40 1 0.1326 -6.2749 4.8458 41 1 -0.1063 -6.4844 6.5972 42 1 -1.0781 -5.2911 5.7028 43 1 3.0723 -4.6074 6.4778 44 1 2.2475 -6.0385 7.1404 45 1 2.5945 -5.9387 5.3973 46 1 0.4782 -6.2988 9.4230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594141999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:11 Heat of formation + Delta-G solvation = -31.465779 kcal Electronic energy + Delta-G solvation = -27650.452841 eV Core-core repulsion = 23768.579451 eV Total energy + Delta-G solvation = -3881.873390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53608 -41.07409 -39.73502 -38.30254 -36.29482 -35.12888 -34.72618 -33.87325 -32.64783 -30.69155 -28.22256 -27.55223 -27.52271 -26.97571 -25.83454 -24.74925 -22.78262 -21.98608 -20.63802 -20.15467 -19.57423 -18.29059 -17.80624 -17.72302 -17.60612 -17.18550 -16.58639 -16.53047 -15.99844 -15.63524 -15.35349 -15.21832 -14.74006 -14.71774 -14.43699 -14.00540 -13.94225 -13.46160 -13.26945 -13.23283 -13.09985 -13.04658 -12.78839 -12.65697 -12.58992 -12.56969 -12.23090 -12.14507 -12.13083 -11.70837 -11.48686 -11.47302 -11.20525 -10.91314 -10.70031 -10.40130 -10.12340 -9.96625 -9.21699 -8.02988 -6.17625 -0.16680 0.14913 1.32347 1.41909 1.46003 1.53893 1.86880 2.07581 2.45146 2.76739 2.84036 3.21457 3.27735 3.42499 3.60089 3.89043 3.99301 4.14409 4.28788 4.36510 4.41458 4.52973 4.64263 4.71666 4.74006 4.78813 4.85168 4.95222 5.00454 5.06670 5.09001 5.13631 5.20302 5.20741 5.35440 5.39423 5.57694 5.62977 5.68619 5.69088 6.09075 6.15998 6.21970 6.28487 6.43390 6.70105 6.86789 7.05332 7.49847 7.51643 8.96304 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.002936 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.762239 B = 9534.565457 C =10815.971938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 C -0.142 4.142 4 O -0.297 6.297 5 C 0.292 3.708 6 C -0.003 4.003 7 N -0.386 5.386 8 C -0.012 4.012 9 C 0.364 3.636 10 N -0.648 5.648 11 C 0.687 3.313 12 O -0.576 6.576 13 N -0.717 5.717 14 C 0.170 3.830 15 C 0.053 3.947 16 C -0.119 4.119 17 C -0.120 4.120 18 C -0.529 4.529 19 H 0.044 0.956 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.942 3.058 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.276 1.276 26 N -0.521 5.521 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.199 0.801 35 H 0.212 0.788 36 H 0.438 0.562 37 H 0.408 0.592 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 2.493 -19.802 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 C -0.199 4.199 4 O -0.203 6.203 5 C 0.109 3.891 6 C -0.165 4.165 7 N -0.099 5.099 8 C -0.176 4.176 9 C 0.128 3.872 10 N -0.299 5.299 11 C 0.387 3.613 12 O -0.450 6.450 13 N -0.373 5.373 14 C 0.046 3.954 15 C 0.052 3.948 16 C -0.176 4.176 17 C -0.178 4.178 18 C -0.568 4.568 19 H 0.062 0.938 20 C -0.170 4.170 21 N -0.537 5.537 22 Si 0.770 3.230 23 H -0.206 1.206 24 H -0.209 1.209 25 H -0.201 1.201 26 N -0.257 5.257 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.215 0.785 35 H 0.228 0.772 36 H 0.279 0.721 37 H 0.245 0.755 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.640 3.636 -19.802 20.460 hybrid contribution -0.494 -0.310 1.735 1.830 sum 3.146 3.327 -18.068 18.639 Atomic orbital electron populations 1.22061 0.94463 1.01415 1.03196 1.22490 0.94886 0.93814 0.86845 1.21876 1.01854 0.92037 1.04087 1.86282 1.79701 1.15119 1.39209 1.21127 0.91706 0.86214 0.90079 1.23020 1.04404 0.90004 0.99117 1.68453 1.09710 1.08117 1.23634 1.23470 1.03915 1.03066 0.87192 1.19247 0.92643 0.88142 0.87212 1.42547 1.69958 1.11484 1.05903 1.16252 0.78788 0.85419 0.80892 1.90971 1.55623 1.13884 1.84559 1.45238 1.73221 1.12389 1.06484 1.21139 0.97470 0.93814 0.82989 1.18355 0.93593 0.92461 0.90383 1.21655 0.97186 0.99407 0.99400 1.21670 0.96229 0.99363 1.00509 1.21279 1.47330 0.93722 0.94428 0.93755 1.25420 0.95243 0.95747 1.00610 1.69915 1.49180 1.08775 1.25827 0.85785 0.78290 0.79064 0.79906 1.20576 1.20924 1.20081 1.67880 1.21920 1.10314 1.25562 0.90681 0.90615 0.94717 0.91325 0.89505 0.91889 0.90224 0.78465 0.77180 0.72120 0.75462 0.94485 0.94397 0.94114 0.92080 0.96460 0.96449 0.92015 0.94180 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.53 71.98 0.69 -3.13 16 2 C 0.08 1.98 3.12 30.60 0.10 2.07 16 3 C -0.14 -2.70 9.56 71.98 0.69 -2.01 16 4 O -0.30 -7.72 9.77 -89.90 -0.88 -8.60 16 5 C 0.29 7.83 7.46 84.76 0.63 8.46 16 6 C 0.00 -0.06 11.16 84.84 0.95 0.89 16 7 N -0.39 -8.04 10.48 -194.28 -2.04 -10.08 16 8 C -0.01 -0.22 11.07 84.85 0.94 0.72 16 9 C 0.36 9.08 7.42 132.82 0.99 10.07 16 10 N -0.65 -14.83 5.40 -321.97 -1.74 -16.57 16 11 C 0.69 22.34 8.52 179.05 1.53 23.86 16 12 O -0.58 -23.66 14.52 -3.94 -0.06 -23.72 16 13 N -0.72 -22.79 4.92 -478.55 -2.35 -25.14 16 14 C 0.17 6.92 4.50 86.38 0.39 7.31 16 15 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 16 C -0.12 -5.02 8.05 71.98 0.58 -4.44 16 17 C -0.12 -5.09 8.09 71.98 0.58 -4.50 16 18 C -0.53 -27.36 8.01 25.60 0.21 -27.15 16 19 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 20 C 0.03 1.54 5.14 84.65 0.44 1.97 16 21 N -0.90 -46.93 9.42 21.45 0.20 -46.73 16 22 Si 0.94 42.02 29.54 68.60 2.03 44.05 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 N -0.52 -15.98 6.38 -305.37 -1.95 -17.93 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 2.30 6.89 -2.39 -0.02 2.28 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.20 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.44 5.82 8.73 -92.71 -0.81 5.01 16 37 H 0.41 10.67 6.18 -92.71 -0.57 10.09 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.39 6.74 -2.39 -0.02 1.38 16 41 H 0.06 2.89 6.19 -2.38 -0.01 2.87 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.06 2.94 6.11 -2.39 -0.01 2.93 16 45 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 46 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16 Total: -1.00 -66.35 375.19 1.51 -64.85 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.37 Total: 23.46 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 8.66 Total: 16.41 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -7.88 Total: -116.45 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.94 Total: -32.32 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -66.35 1.51 -64.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594141999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.383 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds