Wall clock time and date at job start Tue Mar 31 2020 12:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46955 * 2 1 4 4 H 1.09004 * 109.46842 * 305.00002 * 3 2 1 5 5 C 1.50693 * 109.47019 * 185.00091 * 3 2 1 6 6 H 1.07997 * 120.00141 * 239.99775 * 5 3 2 7 7 C 1.37878 * 120.00432 * 59.99978 * 5 3 2 8 8 N 1.31519 * 119.99331 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00379 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47167 * 120.00238 * 9 7 5 12 12 H 1.48509 * 109.46951 * 239.99667 * 9 7 5 13 13 N 1.46497 * 109.47291 * 65.00200 * 3 2 1 14 14 C 1.34781 * 119.99844 * 274.99818 * 13 3 2 15 15 O 1.21599 * 120.00268 * 0.02562 * 14 13 3 16 16 C 1.47521 * 119.99827 * 179.97438 * 14 13 3 17 17 C 1.36601 * 125.76711 * 180.02562 * 16 14 13 18 18 N 1.34819 * 106.83476 * 179.97438 * 17 16 14 19 19 C 1.46499 * 126.59101 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46953 * 124.06282 * 19 18 17 21 21 C 1.52995 * 112.99923 * 293.50304 * 20 19 18 22 22 C 1.53001 * 109.47424 * 180.02562 * 21 20 19 23 23 C 1.54035 * 113.81555 * 161.52224 * 20 19 18 24 24 O 1.44173 * 85.51757 * 223.19564 * 23 20 19 25 25 C 1.44173 * 93.33999 * 24.19007 * 24 23 20 26 26 N 1.40205 * 106.81553 * 359.97438 * 18 17 16 27 27 N 1.28772 * 108.36590 * 359.75157 * 26 18 17 28 28 H 1.08998 * 109.47326 * 60.00050 * 1 2 3 29 29 H 1.09001 * 109.47278 * 299.99779 * 1 2 3 30 30 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47326 * 119.99950 * 2 1 3 32 32 H 1.09000 * 109.46838 * 239.99916 * 2 1 3 33 33 H 0.97004 * 119.99604 * 179.97438 * 8 7 5 34 34 H 0.96993 * 120.00628 * 94.99608 * 13 3 2 35 35 H 1.07997 * 126.58274 * 359.95711 * 17 16 14 36 36 H 1.09004 * 109.47409 * 244.06129 * 19 18 17 37 37 H 1.09001 * 109.47268 * 4.06304 * 19 18 17 38 38 H 1.09001 * 109.47725 * 299.99883 * 21 20 19 39 39 H 1.09003 * 109.47276 * 60.00678 * 21 20 19 40 40 H 1.09009 * 109.46780 * 300.00475 * 22 21 20 41 41 H 1.09002 * 109.46930 * 59.99795 * 22 21 20 42 42 H 1.08998 * 109.47890 * 180.02562 * 22 21 20 43 43 H 1.09001 * 113.86810 * 337.34108 * 23 20 19 44 44 H 1.09001 * 113.86689 * 109.04945 * 23 20 19 45 45 H 1.09004 * 113.86623 * 221.66084 * 25 24 23 46 46 H 1.09008 * 113.86209 * 89.95878 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1728 9 14 6.0049 0.8801 -1.3811 10 1 6.5987 1.5453 -0.1937 11 1 6.4961 -0.5190 -1.4627 12 1 6.3999 1.6158 -2.6093 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6319 0.4320 16 6 0.0446 3.3235 2.6277 17 6 -1.1535 3.9322 2.8727 18 7 -1.1017 4.4020 4.1353 19 6 -2.1596 5.1304 4.8401 20 6 -2.4996 4.4024 6.1421 21 6 -3.1396 3.0320 5.9112 22 6 -3.4457 2.3782 7.2602 23 6 -3.2476 5.2765 7.1664 24 8 -2.3632 4.6906 8.1427 25 6 -1.3482 4.3867 7.1650 26 7 0.1590 4.0595 4.6442 27 7 0.8050 3.4207 3.7316 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 3.8292 -0.0611 -2.9498 34 1 2.2718 2.1232 1.9978 35 1 -1.9828 4.0205 2.1865 36 1 -1.8165 6.1398 5.0672 37 1 -3.0474 5.1816 4.2099 38 1 -4.0652 3.1534 5.3484 39 1 -2.4523 2.4002 5.3486 40 1 -2.5203 2.2569 7.8234 41 1 -4.1331 3.0102 7.8226 42 1 -3.9013 1.4017 7.0958 43 1 -3.0999 6.3470 7.0239 44 1 -4.2943 5.0027 7.2990 45 1 -0.8883 3.4072 7.2965 46 1 -0.6204 5.1856 7.0221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:42 Heat of formation + Delta-G solvation = 41.045822 kcal Electronic energy + Delta-G solvation = -27648.484838 eV Core-core repulsion = 23769.755786 eV Total energy + Delta-G solvation = -3878.729051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24794 -41.23177 -38.70653 -35.39957 -35.03566 -33.35973 -32.31095 -31.20147 -30.72576 -29.74596 -27.12035 -26.95143 -26.20880 -24.00593 -23.64832 -22.60517 -22.06804 -20.39233 -19.38865 -19.12599 -18.13695 -16.84734 -16.76574 -16.60917 -15.91798 -15.52712 -15.28577 -15.27910 -14.94420 -14.57220 -14.41469 -14.16848 -13.89033 -13.43576 -13.14101 -12.65491 -12.62248 -12.34180 -12.15085 -12.10745 -11.98141 -11.77955 -11.47915 -11.27476 -11.21636 -11.03597 -10.92083 -10.81783 -10.81265 -10.30586 -10.28199 -10.15286 -9.99285 -9.61889 -9.24215 -9.11395 -8.99825 -8.46809 -7.79058 -6.08961 -4.17365 1.18913 1.91865 2.02809 3.22420 3.27372 3.35308 3.39211 3.54957 3.89345 3.93965 4.03147 4.12766 4.36345 4.42439 4.45596 4.64939 4.79837 4.87396 4.91471 4.98971 5.04747 5.12164 5.22427 5.25067 5.28328 5.35985 5.51261 5.61281 5.69136 5.70267 5.78644 5.98062 6.04831 6.31843 6.41724 6.48708 6.68210 7.08058 7.21054 7.38425 7.45756 7.65755 7.76227 7.92042 8.06319 8.20796 8.71314 8.80680 9.12354 9.49578 10.96575 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.002624 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.659558 B =10667.492769 C =11059.466842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.688 5.688 14 C 0.585 3.415 15 O -0.549 6.549 16 C -0.084 4.084 17 C 0.083 3.917 18 N -0.364 5.364 19 C 0.130 3.870 20 C -0.145 4.145 21 C -0.101 4.101 22 C -0.147 4.147 23 C 0.052 3.948 24 O -0.375 6.375 25 C 0.058 3.942 26 N -0.073 5.073 27 N -0.202 5.202 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.022 0.978 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.263 0.737 34 H 0.397 0.603 35 H 0.201 0.799 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 9.278 16.654 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.334 5.334 14 C 0.367 3.633 15 O -0.428 6.428 16 C -0.224 4.224 17 C -0.073 4.073 18 N -0.149 5.149 19 C 0.008 3.992 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.204 4.204 23 C -0.026 4.026 24 O -0.293 6.293 25 C -0.018 4.018 26 N -0.053 5.053 27 N -0.076 5.076 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.230 0.770 35 H 0.218 0.782 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.136 9.178 17.281 24.738 hybrid contribution 0.498 0.073 -0.827 0.968 sum -14.639 9.251 16.453 23.887 Atomic orbital electron populations 1.21841 0.98398 0.98050 1.01161 1.21942 0.92606 0.99719 1.02424 1.18859 0.94393 0.89229 0.80686 0.93089 1.21287 0.90673 1.38762 1.06276 0.91875 1.24876 0.98614 0.94808 0.95375 1.69908 1.35002 1.37825 1.09371 0.86399 0.84906 0.77750 0.78115 1.19656 1.20894 1.20939 1.46371 1.14031 1.54250 1.18796 1.16787 0.83343 0.78925 0.84211 1.90773 1.51946 1.61205 1.38826 1.21989 0.93377 1.10167 0.96881 1.23356 1.00610 0.96208 0.87142 1.50331 1.14110 1.40056 1.10427 1.22066 0.88193 0.95132 0.93762 1.24167 0.98366 0.97905 0.94159 1.21286 1.00454 0.93106 0.98989 1.21777 1.02378 1.00062 0.96218 1.23959 0.96270 0.97046 0.85312 1.89722 1.30554 1.79154 1.29891 1.23993 0.91000 1.02666 0.84174 1.81892 0.88368 1.16851 1.18218 1.74670 1.24576 1.09424 0.98905 0.93085 0.94359 0.95849 0.94906 0.88163 0.92666 0.76998 0.78204 0.88154 0.87398 0.91029 0.91263 0.92071 0.92165 0.92770 0.89848 0.88594 0.88613 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.84 2.24 -69.09 -0.15 6.69 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.69 -15.01 5.02 -55.98 -0.28 -15.29 16 14 C 0.59 11.88 6.39 -12.47 -0.08 11.80 16 15 O -0.55 -12.29 14.00 5.28 0.07 -12.21 16 16 C -0.08 -1.39 6.99 -83.55 -0.58 -1.97 16 17 C 0.08 1.01 11.27 -16.83 -0.19 0.82 16 18 N -0.36 -3.78 3.46 -61.06 -0.21 -4.00 16 19 C 0.13 0.77 5.93 -4.04 -0.02 0.75 16 20 C -0.14 -0.94 1.12 -153.43 -0.17 -1.11 16 21 C -0.10 -0.73 5.55 -26.73 -0.15 -0.88 16 22 C -0.15 -1.11 8.63 37.16 0.32 -0.79 16 23 C 0.05 0.28 7.74 37.61 0.29 0.57 16 24 O -0.37 -3.33 10.86 -35.23 -0.38 -3.71 16 25 C 0.06 0.49 6.48 37.60 0.24 0.74 16 26 N -0.07 -1.00 12.49 60.35 0.75 -0.25 16 27 N -0.20 -3.32 12.04 32.85 0.40 -2.92 16 28 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 29 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.40 8.16 8.22 -40.82 -0.34 7.82 16 35 H 0.20 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.10 0.46 8.05 -51.93 -0.42 0.05 16 37 H 0.11 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 40 H 0.06 0.53 6.53 -51.92 -0.34 0.20 16 41 H 0.06 0.42 6.54 -51.93 -0.34 0.08 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.31 8.03 -51.93 -0.42 -0.11 16 44 H 0.10 0.40 7.33 -51.93 -0.38 0.02 16 45 H 0.10 0.92 7.33 -51.93 -0.38 0.54 16 46 H 0.09 0.74 8.10 -51.92 -0.42 0.32 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -31.71 370.27 -6.11 -37.82 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.93 Total: 5.48 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -0.72 Total: -2.23 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.28 Total: -46.56 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.31 Total: -15.93 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.71 -6.11 -37.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.865 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds