Wall clock time and date at job start Tue Mar 31 2020 12:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46955 * 2 1 4 4 H 1.09004 * 109.46842 * 305.00002 * 3 2 1 5 5 C 1.50693 * 109.47019 * 185.00091 * 3 2 1 6 6 H 1.07997 * 120.00141 * 239.99775 * 5 3 2 7 7 C 1.37878 * 120.00432 * 59.99978 * 5 3 2 8 8 N 1.31519 * 119.99331 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00379 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47167 * 120.00238 * 9 7 5 12 12 H 1.48509 * 109.46951 * 239.99667 * 9 7 5 13 13 N 1.46497 * 109.47291 * 65.00200 * 3 2 1 14 14 C 1.34781 * 119.99844 * 274.99818 * 13 3 2 15 15 O 1.21599 * 120.00268 * 0.02562 * 14 13 3 16 16 C 1.47521 * 119.99827 * 179.97438 * 14 13 3 17 17 C 1.36601 * 125.76711 * 180.02562 * 16 14 13 18 18 N 1.34819 * 106.83476 * 179.97438 * 17 16 14 19 19 C 1.46499 * 126.59101 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46953 * 124.06282 * 19 18 17 21 21 C 1.52995 * 112.99923 * 293.50304 * 20 19 18 22 22 C 1.53001 * 109.47424 * 180.02562 * 21 20 19 23 23 C 1.54035 * 113.81555 * 161.52224 * 20 19 18 24 24 O 1.44173 * 85.51757 * 223.19564 * 23 20 19 25 25 C 1.44173 * 93.33999 * 24.19007 * 24 23 20 26 26 N 1.40205 * 106.81553 * 359.97438 * 18 17 16 27 27 N 1.28772 * 108.36590 * 359.75157 * 26 18 17 28 28 H 1.08998 * 109.47326 * 60.00050 * 1 2 3 29 29 H 1.09001 * 109.47278 * 299.99779 * 1 2 3 30 30 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47326 * 119.99950 * 2 1 3 32 32 H 1.09000 * 109.46838 * 239.99916 * 2 1 3 33 33 H 0.97004 * 119.99604 * 179.97438 * 8 7 5 34 34 H 0.96993 * 120.00628 * 94.99608 * 13 3 2 35 35 H 1.07997 * 126.58274 * 359.95711 * 17 16 14 36 36 H 1.09004 * 109.47409 * 244.06129 * 19 18 17 37 37 H 1.09001 * 109.47268 * 4.06304 * 19 18 17 38 38 H 1.09001 * 109.47725 * 299.99883 * 21 20 19 39 39 H 1.09003 * 109.47276 * 60.00678 * 21 20 19 40 40 H 1.09009 * 109.46780 * 300.00475 * 22 21 20 41 41 H 1.09002 * 109.46930 * 59.99795 * 22 21 20 42 42 H 1.08998 * 109.47890 * 180.02562 * 22 21 20 43 43 H 1.09001 * 113.86810 * 337.34108 * 23 20 19 44 44 H 1.09001 * 113.86689 * 109.04945 * 23 20 19 45 45 H 1.09004 * 113.86623 * 221.66084 * 25 24 23 46 46 H 1.09008 * 113.86209 * 89.95878 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1728 9 14 6.0049 0.8801 -1.3811 10 1 6.5987 1.5453 -0.1937 11 1 6.4961 -0.5190 -1.4627 12 1 6.3999 1.6158 -2.6093 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6319 0.4320 16 6 0.0446 3.3235 2.6277 17 6 -1.1535 3.9322 2.8727 18 7 -1.1017 4.4020 4.1353 19 6 -2.1596 5.1304 4.8401 20 6 -2.4996 4.4024 6.1421 21 6 -3.1396 3.0320 5.9112 22 6 -3.4457 2.3782 7.2602 23 6 -3.2476 5.2765 7.1664 24 8 -2.3632 4.6906 8.1427 25 6 -1.3482 4.3867 7.1650 26 7 0.1590 4.0595 4.6442 27 7 0.8050 3.4207 3.7316 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 3.8292 -0.0611 -2.9498 34 1 2.2718 2.1232 1.9978 35 1 -1.9828 4.0205 2.1865 36 1 -1.8165 6.1398 5.0672 37 1 -3.0474 5.1816 4.2099 38 1 -4.0652 3.1534 5.3484 39 1 -2.4523 2.4002 5.3486 40 1 -2.5203 2.2569 7.8234 41 1 -4.1331 3.0102 7.8226 42 1 -3.9013 1.4017 7.0958 43 1 -3.0999 6.3470 7.0239 44 1 -4.2943 5.0027 7.2990 45 1 -0.8883 3.4072 7.2965 46 1 -0.6204 5.1856 7.0221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:41 Heat of formation + Delta-G solvation = 18.478765 kcal Electronic energy + Delta-G solvation = -27649.463419 eV Core-core repulsion = 23769.755786 eV Total energy + Delta-G solvation = -3879.707632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.24601 -41.86865 -40.36592 -36.91772 -36.17800 -34.32842 -33.99411 -32.88542 -31.85389 -30.67011 -28.91446 -27.58074 -26.94261 -25.38295 -24.55742 -24.21523 -23.00560 -21.94500 -21.07981 -19.92658 -19.34315 -18.19988 -17.45373 -17.31274 -17.22332 -17.14175 -16.48157 -16.34078 -16.07494 -15.81506 -15.49937 -15.42331 -15.01396 -14.57246 -14.39989 -14.05071 -13.78999 -13.44115 -13.23387 -13.15167 -13.13030 -12.88334 -12.84127 -12.73066 -12.68574 -12.47111 -12.24728 -12.14319 -12.04067 -11.63850 -11.57205 -11.41399 -11.11729 -11.03526 -10.91059 -10.55864 -10.52142 -10.26043 -9.60269 -8.15353 -6.31554 0.20836 0.74772 1.11016 1.44093 1.45597 1.57650 2.35662 2.44571 2.59598 2.70336 2.99546 3.13986 3.32424 3.43287 3.54639 3.82467 3.96336 4.05864 4.12779 4.30820 4.37392 4.43342 4.50030 4.53239 4.54410 4.60545 4.61052 4.64469 4.74842 4.84134 4.95825 5.06239 5.10328 5.12582 5.16354 5.22704 5.28647 5.37639 5.46224 5.49239 5.57070 5.62611 5.81421 5.92080 6.18277 6.75010 6.82675 7.08386 7.32810 7.50880 8.90235 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.002624 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.659558 B =10667.492769 C =11059.466842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.281 1.281 13 N -0.694 5.694 14 C 0.587 3.413 15 O -0.574 6.574 16 C -0.119 4.119 17 C 0.110 3.890 18 N -0.343 5.343 19 C 0.119 3.881 20 C -0.137 4.137 21 C -0.099 4.099 22 C -0.145 4.145 23 C 0.059 3.941 24 O -0.399 6.399 25 C 0.051 3.949 26 N -0.079 5.079 27 N -0.230 5.230 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.235 0.765 36 H 0.124 0.876 37 H 0.149 0.851 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.165 10.831 17.751 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.207 1.207 13 N -0.341 5.341 14 C 0.372 3.628 15 O -0.455 6.455 16 C -0.258 4.258 17 C -0.048 4.048 18 N -0.128 5.128 19 C 0.000 4.000 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.202 4.202 23 C -0.018 4.018 24 O -0.319 6.319 25 C -0.026 4.026 26 N -0.059 5.059 27 N -0.103 5.103 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.251 0.749 36 H 0.142 0.858 37 H 0.167 0.833 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.091 0.909 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.793 10.758 18.432 27.157 hybrid contribution 0.872 -0.336 -1.058 1.411 sum -15.922 10.423 17.374 25.768 Atomic orbital electron populations 1.21672 0.96581 0.99289 1.00460 1.21792 0.94174 0.98925 1.01195 1.18452 0.93654 0.89341 0.80929 0.97390 1.21584 0.91584 1.38981 1.06622 0.91740 1.25700 1.03145 0.94316 0.94966 1.70036 1.36844 1.38299 1.09817 0.85362 0.79362 0.77893 0.78118 1.18989 1.20281 1.20680 1.46177 1.15153 1.55027 1.17759 1.17170 0.82239 0.78044 0.85321 1.90744 1.52387 1.62085 1.40262 1.21515 0.95566 1.12964 0.95800 1.23727 0.99627 0.93666 0.87741 1.50605 1.13735 1.38579 1.09860 1.22657 0.88314 0.95291 0.93785 1.24063 0.97454 0.97962 0.94279 1.21276 1.00883 0.93018 0.98506 1.21741 1.01549 1.00433 0.96472 1.24202 0.96475 0.97994 0.83145 1.89709 1.31261 1.79733 1.31155 1.23933 0.91647 1.01485 0.85489 1.81814 0.89758 1.16604 1.17774 1.74646 1.25802 1.10619 0.99275 0.94770 0.93945 0.93542 0.94625 0.90649 0.92495 0.76418 0.74911 0.85831 0.83336 0.88671 0.93872 0.94062 0.91284 0.92765 0.87429 0.86949 0.90855 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.88 16 2 C -0.12 -6.13 5.45 30.59 0.17 -5.96 16 3 C 0.28 14.69 2.24 44.24 0.10 14.79 16 4 H 0.01 0.50 7.58 -2.39 -0.02 0.48 16 5 C -0.55 -30.16 8.73 25.60 0.22 -29.94 16 6 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.27 11.29 21.45 0.24 -52.02 16 9 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.69 -31.20 5.02 -449.28 -2.25 -33.45 16 14 C 0.59 24.19 6.39 86.69 0.55 24.74 16 15 O -0.57 -26.05 14.00 -4.03 -0.06 -26.11 16 16 C -0.12 -3.84 6.99 40.82 0.29 -3.56 16 17 C 0.11 2.41 11.27 83.85 0.95 3.35 16 18 N -0.34 -6.19 3.46 -347.09 -1.20 -7.39 16 19 C 0.12 0.90 5.93 86.38 0.51 1.41 16 20 C -0.14 -1.37 1.12 -51.49 -0.06 -1.43 16 21 C -0.10 -1.21 5.55 30.59 0.17 -1.04 16 22 C -0.14 -2.01 8.63 71.98 0.62 -1.39 16 23 C 0.06 0.42 7.74 72.27 0.56 0.98 16 24 O -0.40 -6.46 10.86 -148.98 -1.62 -8.08 16 25 C 0.05 0.82 6.48 72.27 0.47 1.28 16 26 N -0.08 -2.09 12.49 37.02 0.46 -1.62 16 27 N -0.23 -7.52 12.04 -49.99 -0.60 -8.12 16 28 H 0.03 1.61 7.84 -2.39 -0.02 1.59 16 29 H 0.04 1.84 5.64 -2.39 -0.01 1.82 16 30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 4.18 5.95 -2.39 -0.01 4.17 16 33 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.40 17.06 8.22 -92.71 -0.76 16.30 16 35 H 0.23 3.44 8.06 -2.91 -0.02 3.41 16 36 H 0.12 0.52 8.05 -2.38 -0.02 0.50 16 37 H 0.15 0.06 8.08 -2.39 -0.02 0.04 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.04 0.76 8.03 -2.39 -0.02 0.74 16 40 H 0.04 0.73 6.53 -2.38 -0.02 0.71 16 41 H 0.07 0.82 6.54 -2.39 -0.02 0.81 16 42 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.11 0.28 8.03 -2.39 -0.02 0.26 16 44 H 0.11 0.46 7.33 -2.39 -0.02 0.44 16 45 H 0.07 1.47 7.33 -2.38 -0.02 1.45 16 46 H 0.09 1.37 8.10 -2.38 -0.02 1.35 16 Total: -1.00 -72.35 370.27 2.84 -69.51 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.24 Total: 22.27 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.61 Total: -0.14 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -3.35 Total: -102.61 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.67 Total: -34.19 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.35 2.84 -69.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.985 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds