Wall clock time and date at job start Tue Mar 31 2020 12:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 H 1.09001 * 109.47316 * 54.99436 * 3 2 1 5 5 C 1.50701 * 109.47155 * 175.00027 * 3 2 1 6 6 H 1.08000 * 120.00021 * 119.99994 * 5 3 2 7 7 C 1.37882 * 119.99631 * 299.99461 * 5 3 2 8 8 N 1.31514 * 120.00080 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99813 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47319 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47082 * 120.00124 * 9 7 5 12 12 H 1.48493 * 109.47443 * 239.99895 * 9 7 5 13 13 N 1.46501 * 109.46650 * 294.99497 * 3 2 1 14 14 C 1.34780 * 119.99589 * 85.00279 * 13 3 2 15 15 O 1.21587 * 120.00494 * 359.97438 * 14 13 3 16 16 C 1.47525 * 119.99758 * 179.97438 * 14 13 3 17 17 C 1.36599 * 125.77318 * 179.97438 * 16 14 13 18 18 N 1.34814 * 106.83974 * 179.97438 * 17 16 14 19 19 C 1.46499 * 126.59219 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.46845 * 124.06726 * 19 18 17 21 21 C 1.53009 * 113.00177 * 293.50688 * 20 19 18 22 22 C 1.52996 * 109.47002 * 179.97438 * 21 20 19 23 23 C 1.54036 * 113.81727 * 161.52108 * 20 19 18 24 24 O 1.44179 * 85.51967 * 223.19521 * 23 20 19 25 25 C 1.44177 * 93.33926 * 24.19257 * 24 23 20 26 26 N 1.40212 * 106.81258 * 0.02562 * 18 17 16 27 27 N 1.28760 * 108.36446 * 359.74595 * 26 18 17 28 28 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46419 * 60.00252 * 1 2 3 30 30 H 1.08995 * 109.47054 * 300.00772 * 1 2 3 31 31 H 1.09002 * 109.46419 * 119.99747 * 2 1 3 32 32 H 1.08995 * 109.47054 * 239.99228 * 2 1 3 33 33 H 0.97003 * 119.99966 * 179.97438 * 8 7 5 34 34 H 0.96993 * 120.00289 * 264.99933 * 13 3 2 35 35 H 1.07994 * 126.57795 * 359.96229 * 17 16 14 36 36 H 1.08994 * 109.47632 * 244.06896 * 19 18 17 37 37 H 1.09003 * 109.47440 * 4.07304 * 19 18 17 38 38 H 1.08992 * 109.46825 * 299.99999 * 21 20 19 39 39 H 1.08998 * 109.46785 * 60.00038 * 21 20 19 40 40 H 1.08993 * 109.47647 * 300.00338 * 22 21 20 41 41 H 1.09007 * 109.47118 * 60.00231 * 22 21 20 42 42 H 1.09001 * 109.46835 * 180.02562 * 22 21 20 43 43 H 1.09003 * 113.86609 * 337.34689 * 23 20 19 44 44 H 1.08999 * 113.86510 * 109.04842 * 23 20 19 45 45 H 1.08998 * 113.86379 * 221.65816 * 25 24 23 46 46 H 1.09002 * 113.86337 * 89.94804 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8811 1.3820 10 1 6.5988 1.5471 0.1949 11 1 6.3990 1.6167 2.6104 12 1 6.4970 -0.5175 1.4633 13 7 1.6526 2.0973 -1.2519 14 6 0.4353 2.6643 -1.3671 15 8 -0.3414 2.6318 -0.4322 16 6 0.0453 3.3242 -2.6275 17 6 -1.1527 3.9331 -2.8726 18 7 -1.1001 4.4047 -4.1345 19 6 -2.1579 5.1330 -4.8394 20 6 -1.6117 6.4741 -5.3333 21 6 -1.2550 7.4306 -4.1936 22 6 -0.7188 8.7400 -4.7757 23 6 -2.4581 7.1181 -6.4475 24 8 -1.1963 7.4131 -7.0797 25 6 -0.5101 6.3416 -6.4018 26 7 0.1611 4.0631 -4.6429 27 7 0.8104 3.4324 -3.7272 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.8292 -0.0618 2.9497 34 1 2.2721 2.1229 -1.9978 35 1 -1.9827 4.0198 -2.1872 36 1 -2.4994 4.5441 -5.6906 37 1 -2.9926 5.3085 -4.1607 38 1 -2.1451 7.6347 -3.5986 39 1 -0.4924 6.9749 -3.5621 40 1 0.1713 8.5356 -5.3705 41 1 -1.4812 9.1959 -5.4075 42 1 -0.4643 9.4212 -3.9637 43 1 -3.0731 6.4080 -7.0005 44 1 -3.0086 8.0028 -6.1277 45 1 0.4844 6.6104 -6.0457 46 1 -0.5303 5.3943 -6.9408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:45 Heat of formation + Delta-G solvation = 41.071467 kcal Electronic energy + Delta-G solvation = -27613.037225 eV Core-core repulsion = 23734.309286 eV Total energy + Delta-G solvation = -3878.727939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24751 -41.22750 -38.70820 -35.39772 -35.03603 -33.35477 -32.31114 -31.20165 -30.72423 -29.74351 -27.11789 -26.94943 -26.20696 -23.99976 -23.64690 -22.60486 -22.06793 -20.39212 -19.38707 -19.12357 -18.13649 -16.83308 -16.76051 -16.63081 -15.88963 -15.49285 -15.36665 -15.26414 -14.93305 -14.55003 -14.38478 -14.26376 -13.80218 -13.42126 -13.19096 -12.65493 -12.61759 -12.33716 -12.12659 -12.06941 -12.02172 -11.77356 -11.48121 -11.26772 -11.21735 -11.03574 -10.91978 -10.81802 -10.80725 -10.30486 -10.28133 -10.15294 -9.98928 -9.61908 -9.24272 -9.11223 -8.99823 -8.46831 -7.79072 -6.08936 -4.17358 1.18946 1.91931 2.02857 3.22779 3.27413 3.35368 3.39230 3.55282 3.89355 3.94304 4.03376 4.12925 4.36445 4.42543 4.45710 4.65297 4.79903 4.87599 4.92239 4.99074 5.05325 5.12771 5.22449 5.25795 5.28384 5.36131 5.51941 5.61850 5.69773 5.70965 5.79309 5.99033 6.04865 6.31883 6.41806 6.48825 6.68206 7.08092 7.21120 7.38471 7.45769 7.65783 7.76237 7.92046 8.06381 8.20770 8.71342 8.80687 9.12371 9.49588 10.96586 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021067 B = 0.002694 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.784590 B =10391.803171 C =11046.253153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.688 5.688 14 C 0.585 3.415 15 O -0.549 6.549 16 C -0.085 4.085 17 C 0.083 3.917 18 N -0.364 5.364 19 C 0.130 3.870 20 C -0.145 4.145 21 C -0.101 4.101 22 C -0.147 4.147 23 C 0.052 3.948 24 O -0.375 6.375 25 C 0.058 3.942 26 N -0.073 5.073 27 N -0.202 5.202 28 H 0.022 0.978 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.397 0.603 35 H 0.201 0.799 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.199 12.375 -15.442 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.335 5.335 14 C 0.367 3.633 15 O -0.427 6.427 16 C -0.224 4.224 17 C -0.073 4.073 18 N -0.149 5.149 19 C 0.009 3.991 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.204 4.204 23 C -0.026 4.026 24 O -0.293 6.293 25 C -0.018 4.018 26 N -0.053 5.053 27 N -0.076 5.076 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.230 0.770 35 H 0.218 0.782 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.702 12.520 -15.973 24.487 hybrid contribution 0.367 -0.235 0.707 0.831 sum -13.336 12.285 -15.266 23.702 Atomic orbital electron populations 1.21842 0.98397 0.98055 1.01163 1.21943 0.92608 0.99721 1.02426 1.18861 0.94393 0.89230 0.80682 0.93090 1.21291 0.90671 1.38774 1.06269 0.91869 1.24874 0.98611 0.94811 0.95368 1.69904 1.35005 1.37810 1.09386 0.86401 0.84910 0.77750 0.78120 1.19653 1.20937 1.20897 1.46372 1.14029 1.54257 1.18796 1.16783 0.83342 0.78933 0.84201 1.90770 1.51941 1.61216 1.38818 1.21991 0.93198 1.10206 0.97026 1.23353 1.00656 0.96207 0.87098 1.50332 1.14466 1.39583 1.10549 1.22063 0.87173 0.91625 0.98284 1.24171 0.98176 0.94609 0.97640 1.21288 1.01742 0.95271 0.95554 1.21775 1.01894 0.96109 1.00659 1.23959 0.88637 0.99895 0.90098 1.89724 1.20902 1.49909 1.68778 1.23995 0.97137 0.91161 0.89546 1.81891 0.88270 1.17005 1.18158 1.74665 1.24550 1.09410 0.98949 0.95841 0.94354 0.93088 0.88163 0.94903 0.92664 0.76998 0.78207 0.88168 0.87400 0.91021 0.91244 0.92067 0.92172 0.92759 0.89856 0.88594 0.88601 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.69 -15.01 5.02 -55.98 -0.28 -15.29 16 14 C 0.59 11.88 6.38 -12.47 -0.08 11.80 16 15 O -0.55 -12.29 14.00 5.29 0.07 -12.21 16 16 C -0.08 -1.39 6.99 -83.55 -0.58 -1.98 16 17 C 0.08 1.01 11.27 -16.83 -0.19 0.82 16 18 N -0.36 -3.79 3.46 -61.06 -0.21 -4.00 16 19 C 0.13 0.78 5.93 -4.04 -0.02 0.75 16 20 C -0.14 -0.95 1.12 -153.42 -0.17 -1.12 16 21 C -0.10 -0.74 5.55 -26.73 -0.15 -0.89 16 22 C -0.15 -1.13 8.63 37.16 0.32 -0.81 16 23 C 0.05 0.28 7.74 37.61 0.29 0.57 16 24 O -0.37 -3.35 10.86 -35.23 -0.38 -3.73 16 25 C 0.06 0.50 6.48 37.61 0.24 0.74 16 26 N -0.07 -1.00 12.49 60.35 0.75 -0.25 16 27 N -0.20 -3.32 12.04 32.85 0.40 -2.92 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 30 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 31 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.40 8.16 8.23 -40.82 -0.34 7.82 16 35 H 0.20 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.10 0.46 8.05 -51.93 -0.42 0.04 16 37 H 0.11 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.67 8.03 -51.93 -0.42 0.26 16 40 H 0.06 0.54 6.53 -51.93 -0.34 0.20 16 41 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.31 8.03 -51.93 -0.42 -0.11 16 44 H 0.10 0.41 7.34 -51.93 -0.38 0.03 16 45 H 0.10 0.93 7.32 -51.93 -0.38 0.55 16 46 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -31.70 370.27 -6.11 -37.82 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.93 Total: 5.54 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.72 Total: -2.27 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.28 Total: -46.56 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.31 Total: -15.94 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.70 -6.11 -37.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.887 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds