Wall clock time and date at job start Tue Mar 31 2020 12:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 H 1.09001 * 109.47316 * 54.99436 * 3 2 1 5 5 C 1.50701 * 109.47155 * 175.00027 * 3 2 1 6 6 H 1.08000 * 120.00021 * 119.99994 * 5 3 2 7 7 C 1.37882 * 119.99631 * 299.99461 * 5 3 2 8 8 N 1.31514 * 120.00080 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99813 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47319 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47082 * 120.00124 * 9 7 5 12 12 H 1.48493 * 109.47443 * 239.99895 * 9 7 5 13 13 N 1.46501 * 109.46650 * 294.99497 * 3 2 1 14 14 C 1.34780 * 119.99589 * 85.00279 * 13 3 2 15 15 O 1.21587 * 120.00494 * 359.97438 * 14 13 3 16 16 C 1.47525 * 119.99758 * 179.97438 * 14 13 3 17 17 C 1.36599 * 125.77318 * 179.97438 * 16 14 13 18 18 N 1.34814 * 106.83974 * 179.97438 * 17 16 14 19 19 C 1.46499 * 126.59219 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.46845 * 124.06726 * 19 18 17 21 21 C 1.53009 * 113.00177 * 293.50688 * 20 19 18 22 22 C 1.52996 * 109.47002 * 179.97438 * 21 20 19 23 23 C 1.54036 * 113.81727 * 161.52108 * 20 19 18 24 24 O 1.44179 * 85.51967 * 223.19521 * 23 20 19 25 25 C 1.44177 * 93.33926 * 24.19257 * 24 23 20 26 26 N 1.40212 * 106.81258 * 0.02562 * 18 17 16 27 27 N 1.28760 * 108.36446 * 359.74595 * 26 18 17 28 28 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46419 * 60.00252 * 1 2 3 30 30 H 1.08995 * 109.47054 * 300.00772 * 1 2 3 31 31 H 1.09002 * 109.46419 * 119.99747 * 2 1 3 32 32 H 1.08995 * 109.47054 * 239.99228 * 2 1 3 33 33 H 0.97003 * 119.99966 * 179.97438 * 8 7 5 34 34 H 0.96993 * 120.00289 * 264.99933 * 13 3 2 35 35 H 1.07994 * 126.57795 * 359.96229 * 17 16 14 36 36 H 1.08994 * 109.47632 * 244.06896 * 19 18 17 37 37 H 1.09003 * 109.47440 * 4.07304 * 19 18 17 38 38 H 1.08992 * 109.46825 * 299.99999 * 21 20 19 39 39 H 1.08998 * 109.46785 * 60.00038 * 21 20 19 40 40 H 1.08993 * 109.47647 * 300.00338 * 22 21 20 41 41 H 1.09007 * 109.47118 * 60.00231 * 22 21 20 42 42 H 1.09001 * 109.46835 * 180.02562 * 22 21 20 43 43 H 1.09003 * 113.86609 * 337.34689 * 23 20 19 44 44 H 1.08999 * 113.86510 * 109.04842 * 23 20 19 45 45 H 1.08998 * 113.86379 * 221.65816 * 25 24 23 46 46 H 1.09002 * 113.86337 * 89.94804 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8811 1.3820 10 1 6.5988 1.5471 0.1949 11 1 6.3990 1.6167 2.6104 12 1 6.4970 -0.5175 1.4633 13 7 1.6526 2.0973 -1.2519 14 6 0.4353 2.6643 -1.3671 15 8 -0.3414 2.6318 -0.4322 16 6 0.0453 3.3242 -2.6275 17 6 -1.1527 3.9331 -2.8726 18 7 -1.1001 4.4047 -4.1345 19 6 -2.1579 5.1330 -4.8394 20 6 -1.6117 6.4741 -5.3333 21 6 -1.2550 7.4306 -4.1936 22 6 -0.7188 8.7400 -4.7757 23 6 -2.4581 7.1181 -6.4475 24 8 -1.1963 7.4131 -7.0797 25 6 -0.5101 6.3416 -6.4018 26 7 0.1611 4.0631 -4.6429 27 7 0.8104 3.4324 -3.7272 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.8292 -0.0618 2.9497 34 1 2.2721 2.1229 -1.9978 35 1 -1.9827 4.0198 -2.1872 36 1 -2.4994 4.5441 -5.6906 37 1 -2.9926 5.3085 -4.1607 38 1 -2.1451 7.6347 -3.5986 39 1 -0.4924 6.9749 -3.5621 40 1 0.1713 8.5356 -5.3705 41 1 -1.4812 9.1959 -5.4075 42 1 -0.4643 9.4212 -3.9637 43 1 -3.0731 6.4080 -7.0005 44 1 -3.0086 8.0028 -6.1277 45 1 0.4844 6.6104 -6.0457 46 1 -0.5303 5.3943 -6.9408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:44 Heat of formation + Delta-G solvation = 18.491016 kcal Electronic energy + Delta-G solvation = -27614.016387 eV Core-core repulsion = 23734.309286 eV Total energy + Delta-G solvation = -3879.707101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.24660 -41.86861 -40.36742 -36.91773 -36.17847 -34.33001 -33.99752 -32.88312 -31.85441 -30.67173 -28.91413 -27.58118 -26.94287 -25.38271 -24.56226 -24.21391 -23.00611 -21.94350 -21.07940 -19.92823 -19.34544 -18.19631 -17.46888 -17.31555 -17.24276 -17.09467 -16.48558 -16.36319 -16.09105 -15.75995 -15.54914 -15.44768 -14.92342 -14.57422 -14.46966 -14.05197 -13.75796 -13.45563 -13.22971 -13.14913 -13.13219 -12.88455 -12.84732 -12.73219 -12.68999 -12.47226 -12.24735 -12.14332 -12.04161 -11.64024 -11.56759 -11.41743 -11.11840 -11.03481 -10.91113 -10.56007 -10.52159 -10.25946 -9.60250 -8.15456 -6.31656 0.20861 0.74844 1.11086 1.43892 1.45430 1.57417 2.35472 2.44742 2.59520 2.70213 2.99416 3.13857 3.32444 3.43207 3.54371 3.82382 3.96352 4.05907 4.12588 4.30291 4.37314 4.43221 4.50016 4.53663 4.53996 4.60652 4.61159 4.64355 4.75068 4.84302 4.95422 5.05871 5.10535 5.12189 5.16069 5.22582 5.29073 5.36942 5.46592 5.49304 5.57285 5.62536 5.81675 5.92129 6.18388 6.74903 6.82722 7.08430 7.32732 7.50867 8.90103 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021067 B = 0.002694 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.784590 B =10391.803171 C =11046.253153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.694 5.694 14 C 0.587 3.413 15 O -0.574 6.574 16 C -0.119 4.119 17 C 0.110 3.890 18 N -0.343 5.343 19 C 0.119 3.881 20 C -0.137 4.137 21 C -0.100 4.100 22 C -0.145 4.145 23 C 0.059 3.941 24 O -0.399 6.399 25 C 0.051 3.949 26 N -0.079 5.079 27 N -0.230 5.230 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.235 0.765 36 H 0.125 0.875 37 H 0.149 0.851 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.214 13.088 -16.885 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.341 5.341 14 C 0.372 3.628 15 O -0.455 6.455 16 C -0.259 4.259 17 C -0.048 4.048 18 N -0.128 5.128 19 C 0.000 4.000 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.202 4.202 23 C -0.018 4.018 24 O -0.319 6.319 25 C -0.026 4.026 26 N -0.059 5.059 27 N -0.103 5.103 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.251 0.749 36 H 0.143 0.857 37 H 0.167 0.833 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.738 13.260 -17.469 26.994 hybrid contribution 0.882 -0.328 1.067 1.423 sum -14.856 12.932 -16.402 25.631 Atomic orbital electron populations 1.21674 0.96557 0.99315 1.00462 1.21792 0.94197 0.98881 1.01215 1.18454 0.93638 0.89372 0.80917 0.97428 1.21587 0.91598 1.38993 1.06618 0.91760 1.25695 1.03125 0.94323 0.94959 1.70032 1.36839 1.38279 1.09828 0.85366 0.79388 0.77911 0.78099 1.19019 1.20705 1.20235 1.46179 1.15149 1.55037 1.17759 1.17166 0.82241 0.78048 0.85313 1.90741 1.52391 1.62094 1.40248 1.21518 0.95346 1.13017 0.95975 1.23723 0.99695 0.93700 0.87640 1.50607 1.14085 1.38127 1.09968 1.22655 0.86586 0.90870 0.99913 1.24067 0.97647 0.94904 0.97167 1.21279 1.01835 0.94904 0.95707 1.21739 1.01379 0.96587 1.00499 1.24203 0.87636 1.01014 0.88935 1.89711 1.22695 1.50152 1.69305 1.23935 0.96845 0.91025 0.90749 1.81812 0.89671 1.16698 1.17760 1.74641 1.25746 1.10599 0.99362 0.93494 0.93911 0.94807 0.90660 0.94576 0.92488 0.76419 0.74914 0.85744 0.83341 0.88658 0.93964 0.94067 0.91232 0.92821 0.87358 0.86975 0.90929 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.51 71.98 0.61 -4.87 16 2 C -0.12 -6.11 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.69 2.24 44.24 0.10 14.79 16 4 H 0.01 0.48 7.58 -2.39 -0.02 0.46 16 5 C -0.55 -30.20 8.73 25.60 0.22 -29.98 16 6 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -52.27 11.29 21.45 0.24 -52.02 16 9 Si 0.97 43.20 29.54 68.60 2.03 45.22 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.69 -31.21 5.02 -449.28 -2.25 -33.46 16 14 C 0.59 24.20 6.38 86.69 0.55 24.75 16 15 O -0.57 -26.06 14.00 -3.99 -0.06 -26.11 16 16 C -0.12 -3.85 6.99 40.82 0.29 -3.56 16 17 C 0.11 2.41 11.27 83.85 0.95 3.35 16 18 N -0.34 -6.19 3.46 -347.11 -1.20 -7.39 16 19 C 0.12 0.90 5.93 86.38 0.51 1.41 16 20 C -0.14 -1.39 1.12 -51.48 -0.06 -1.45 16 21 C -0.10 -1.25 5.55 30.60 0.17 -1.08 16 22 C -0.14 -2.07 8.63 71.98 0.62 -1.45 16 23 C 0.06 0.43 7.74 72.27 0.56 0.98 16 24 O -0.40 -6.50 10.86 -148.98 -1.62 -8.12 16 25 C 0.05 0.82 6.48 72.28 0.47 1.29 16 26 N -0.08 -2.08 12.49 37.02 0.46 -1.62 16 27 N -0.23 -7.52 12.04 -49.99 -0.60 -8.12 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.84 5.64 -2.39 -0.01 1.83 16 30 H 0.03 1.59 7.84 -2.39 -0.02 1.57 16 31 H 0.08 4.17 5.95 -2.39 -0.01 4.16 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.40 17.07 8.23 -92.71 -0.76 16.31 16 35 H 0.23 3.44 8.06 -2.91 -0.02 3.41 16 36 H 0.12 0.49 8.05 -2.39 -0.02 0.48 16 37 H 0.15 0.06 8.08 -2.39 -0.02 0.04 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.04 0.77 8.03 -2.39 -0.02 0.75 16 40 H 0.04 0.75 6.53 -2.39 -0.02 0.73 16 41 H 0.07 0.85 6.54 -2.38 -0.02 0.84 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.11 0.28 8.03 -2.39 -0.02 0.26 16 44 H 0.11 0.47 7.34 -2.39 -0.02 0.46 16 45 H 0.07 1.48 7.32 -2.39 -0.02 1.46 16 46 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -72.45 370.27 2.84 -69.61 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.24 Total: 22.29 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.61 Total: -0.26 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -3.35 Total: -102.62 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.67 Total: -34.24 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.45 2.84 -69.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.096 kcal (2) G-P(sol) polarization free energy of solvation -72.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds