Wall clock time and date at job start Tue Mar 31 2020 12:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47280 * 2 1 4 4 H 1.08993 * 109.47297 * 54.99376 * 3 2 1 5 5 C 1.50697 * 109.47317 * 174.99864 * 3 2 1 6 6 H 1.08007 * 119.99972 * 119.72266 * 5 3 2 7 7 C 1.37875 * 119.99879 * 299.99831 * 5 3 2 8 8 N 1.31513 * 119.99981 * 359.72356 * 7 5 3 9 9 Si 1.86803 * 119.99812 * 179.72555 * 7 5 3 10 10 H 1.48494 * 109.47447 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47162 * 120.00114 * 9 7 5 12 12 H 1.48498 * 109.46839 * 239.99648 * 9 7 5 13 13 N 1.46507 * 109.46516 * 294.99802 * 3 2 1 14 14 C 1.34770 * 119.99893 * 85.00370 * 13 3 2 15 15 O 1.21570 * 120.00230 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99950 * 179.97438 * 14 13 3 17 17 C 1.39065 * 120.00240 * 174.91675 * 16 14 13 18 18 C 1.39166 * 120.48751 * 185.06549 * 17 16 14 19 19 C 1.38967 * 118.28397 * 179.97438 * 18 17 16 20 20 O 1.35542 * 120.46675 * 180.02562 * 19 18 17 21 21 C 1.42901 * 117.00163 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47325 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46847 * 65.00269 * 22 21 20 24 24 C 1.52999 * 109.46973 * 185.00248 * 22 21 20 25 25 N 1.32987 * 119.06252 * 0.02562 * 19 18 17 26 26 C 1.31749 * 120.89391 * 359.97438 * 25 19 18 27 27 N 1.31757 * 121.88695 * 359.74119 * 26 25 19 28 28 H 1.09003 * 109.46775 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47359 * 300.00294 * 1 2 3 30 30 H 1.09001 * 109.46543 * 60.00806 * 1 2 3 31 31 H 1.09003 * 109.47234 * 239.99411 * 2 1 3 32 32 H 1.09001 * 109.47083 * 119.99735 * 2 1 3 33 33 H 0.97001 * 119.99416 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99474 * 264.99471 * 13 3 2 35 35 H 0.97001 * 119.99789 * 354.91499 * 16 14 13 36 36 H 1.07993 * 120.85818 * 359.95406 * 18 17 16 37 37 H 1.08995 * 109.46974 * 300.00560 * 21 20 19 38 38 H 1.09001 * 109.46885 * 60.00215 * 21 20 19 39 39 H 1.09000 * 109.46952 * 305.00587 * 22 21 20 40 40 H 1.09002 * 109.46656 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47277 * 299.99798 * 23 22 21 42 42 H 1.08991 * 109.47297 * 60.00223 * 23 22 21 43 43 H 1.09001 * 109.46928 * 60.00257 * 24 22 21 44 44 H 1.09003 * 109.46941 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.46997 * 299.99496 * 24 22 21 46 46 H 1.07999 * 119.05710 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2280 8 7 3.4059 0.3420 2.1757 9 14 6.0052 0.8739 1.3779 10 1 6.5993 1.5336 0.1876 11 1 6.4050 1.6105 2.6038 12 1 6.4916 -0.5267 1.4613 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3413 2.6319 -0.4323 16 7 0.0788 3.2672 -2.5186 17 6 -1.2125 3.7588 -2.6754 18 6 -1.6232 4.2883 -3.8952 19 6 -2.9237 4.7662 -4.0011 20 8 -3.3702 5.2906 -5.1685 21 6 -4.7199 5.7594 -5.1950 22 6 -5.0409 6.3114 -6.5854 23 6 -4.9866 5.1762 -7.6098 24 6 -6.4420 6.9260 -6.5791 25 7 -3.7241 4.7018 -2.9410 26 6 -3.2989 4.1933 -1.8024 27 7 -2.0753 3.7248 -1.6631 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8290 -0.0558 2.9527 34 1 2.2720 2.1230 -1.9978 35 1 0.7232 3.3582 -3.2380 36 1 -0.9484 4.3270 -4.7375 37 1 -5.3954 4.9349 -4.9669 38 1 -4.8453 6.5478 -4.4528 39 1 -4.3101 7.0754 -6.8506 40 1 -5.2158 5.5694 -8.6002 41 1 -3.9885 4.7383 -7.6143 42 1 -5.7173 4.4122 -7.3446 43 1 -6.4807 7.7347 -5.8493 44 1 -6.6709 7.3189 -7.5697 45 1 -7.1727 6.1619 -6.3139 46 1 -3.9741 4.1551 -0.9603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603114493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:26 Heat of formation + Delta-G solvation = -19.694080 kcal Electronic energy + Delta-G solvation = -26853.250211 eV Core-core repulsion = 22971.887280 eV Total energy + Delta-G solvation = -3881.362931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27458 -39.69964 -38.65858 -35.95401 -35.54451 -34.46202 -32.61693 -31.99486 -31.28493 -30.33485 -27.55350 -27.16796 -26.73841 -24.40045 -23.80986 -22.79945 -20.99700 -20.68167 -19.57198 -19.04249 -18.47240 -17.31323 -16.59988 -16.42417 -15.70329 -15.39495 -15.37103 -15.12948 -14.97986 -14.64561 -14.37665 -14.08690 -13.89487 -13.43294 -13.30407 -12.98783 -12.67341 -12.58247 -12.40477 -11.86913 -11.60776 -11.50914 -11.27041 -11.20933 -11.10492 -10.97580 -10.94884 -10.80567 -10.63790 -10.32643 -10.18987 -9.79764 -9.58655 -9.30019 -9.05382 -8.80489 -8.64230 -8.51251 -7.83224 -6.14032 -4.23306 1.02161 1.31832 2.47170 3.03279 3.22660 3.30919 3.33186 3.68550 4.08415 4.11665 4.23357 4.35462 4.41414 4.46419 4.66780 4.92841 4.96809 5.12336 5.14286 5.17101 5.18238 5.26172 5.34291 5.43122 5.47187 5.53458 5.66531 5.82820 5.92634 5.97634 6.42133 6.48416 6.49991 6.66748 6.81192 6.97252 7.07970 7.17942 7.33497 7.37417 7.44304 7.63153 7.82433 7.91949 8.17033 8.28802 8.70627 8.82647 9.23475 9.44959 10.91414 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033256 B = 0.002175 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.740188 B =12873.125622 C =13221.092354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.718 5.718 14 C 0.679 3.321 15 O -0.523 6.523 16 N -0.666 5.666 17 C 0.460 3.540 18 C -0.299 4.299 19 C 0.382 3.618 20 O -0.301 6.301 21 C 0.075 3.925 22 C -0.098 4.098 23 C -0.148 4.148 24 C -0.145 4.145 25 N -0.607 5.607 26 C 0.361 3.639 27 N -0.522 5.522 28 H 0.021 0.979 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.385 0.615 35 H 0.412 0.588 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.465 9.837 -17.385 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.371 5.371 14 C 0.379 3.621 15 O -0.393 6.393 16 N -0.314 5.314 17 C 0.220 3.780 18 C -0.327 4.327 19 C 0.197 3.803 20 O -0.206 6.206 21 C -0.001 4.001 22 C -0.116 4.116 23 C -0.205 4.205 24 C -0.202 4.202 25 N -0.341 5.341 26 C 0.072 3.928 27 N -0.247 5.247 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.217 0.783 35 H 0.248 0.752 36 H 0.166 0.834 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -15.485 9.607 -15.776 24.103 hybrid contribution 2.028 0.048 -1.228 2.372 sum -13.457 9.654 -17.005 23.737 Atomic orbital electron populations 1.21809 0.98138 0.97908 1.01365 1.21963 0.92769 0.99801 1.02209 1.18749 0.94050 0.88893 0.79791 0.93085 1.21246 0.90589 1.39186 1.06226 0.92030 1.24881 0.98619 0.94812 0.95387 1.69909 1.35029 1.37645 1.09190 0.86392 0.84816 0.77754 0.78101 1.19789 1.20886 1.20891 1.45892 1.13132 1.58610 1.19425 1.16228 0.84149 0.79577 0.82165 1.91032 1.50754 1.61263 1.36259 1.43098 1.10105 1.59029 1.19170 1.18087 0.85555 0.86379 0.88011 1.20951 0.97196 1.14736 0.99787 1.19520 0.88780 0.87017 0.84993 1.86171 1.31738 1.73549 1.29100 1.22794 0.80223 0.99348 0.97698 1.21188 0.98248 0.98576 0.93597 1.21835 1.02569 0.97877 0.98241 1.21764 0.95209 1.00857 1.02387 1.68126 1.38410 1.26049 1.01502 1.24694 0.89777 0.85637 0.92695 1.68626 1.03609 1.21882 1.30544 0.96035 0.93004 0.94367 0.95111 0.88258 0.92568 0.78317 0.75184 0.83418 0.91298 0.91339 0.90170 0.92494 0.91905 0.92638 0.92247 0.91777 0.92224 0.78321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.29 7.06 2.24 -69.08 -0.15 6.90 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.34 11.31 55.43 0.63 -23.72 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.72 -14.34 5.03 -59.82 -0.30 -14.64 16 14 C 0.68 13.41 7.09 -86.92 -0.62 12.79 16 15 O -0.52 -12.28 11.78 5.30 0.06 -12.22 16 16 N -0.67 -10.03 5.39 -15.71 -0.08 -10.11 16 17 C 0.46 7.11 7.45 -154.39 -1.15 5.96 16 18 C -0.30 -3.80 9.99 -38.97 -0.39 -4.19 16 19 C 0.38 4.97 7.52 -16.78 -0.13 4.84 16 20 O -0.30 -3.41 9.67 -18.32 -0.18 -3.59 16 21 C 0.07 0.67 4.72 37.16 0.18 0.85 16 22 C -0.10 -0.67 3.16 -90.62 -0.29 -0.96 16 23 C -0.15 -1.00 9.09 37.16 0.34 -0.66 16 24 C -0.14 -0.77 9.19 37.16 0.34 -0.43 16 25 N -0.61 -8.10 9.38 -14.71 -0.14 -8.24 16 26 C 0.36 5.08 12.28 -92.23 -1.13 3.94 16 27 N -0.52 -9.01 8.04 -13.79 -0.11 -9.12 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 30 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.38 6.48 8.56 -40.82 -0.35 6.13 16 35 H 0.41 4.47 8.74 -40.82 -0.36 4.11 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.20 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -31.79 377.82 -9.80 -41.60 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.13 Total: 8.37 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -3.22 Total: 10.67 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.01 Total: -65.83 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.11 Total: -15.80 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.79 -9.80 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603114493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.901 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds