Wall clock time and date at job start Tue Mar 31 2020 12:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47280 * 2 1 4 4 H 1.08993 * 109.47297 * 54.99376 * 3 2 1 5 5 C 1.50697 * 109.47317 * 174.99864 * 3 2 1 6 6 H 1.08007 * 119.99972 * 119.72266 * 5 3 2 7 7 C 1.37875 * 119.99879 * 299.99831 * 5 3 2 8 8 N 1.31513 * 119.99981 * 359.72356 * 7 5 3 9 9 Si 1.86803 * 119.99812 * 179.72555 * 7 5 3 10 10 H 1.48494 * 109.47447 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47162 * 120.00114 * 9 7 5 12 12 H 1.48498 * 109.46839 * 239.99648 * 9 7 5 13 13 N 1.46507 * 109.46516 * 294.99802 * 3 2 1 14 14 C 1.34770 * 119.99893 * 85.00370 * 13 3 2 15 15 O 1.21570 * 120.00230 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99950 * 179.97438 * 14 13 3 17 17 C 1.39065 * 120.00240 * 174.91675 * 16 14 13 18 18 C 1.39166 * 120.48751 * 185.06549 * 17 16 14 19 19 C 1.38967 * 118.28397 * 179.97438 * 18 17 16 20 20 O 1.35542 * 120.46675 * 180.02562 * 19 18 17 21 21 C 1.42901 * 117.00163 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47325 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46847 * 65.00269 * 22 21 20 24 24 C 1.52999 * 109.46973 * 185.00248 * 22 21 20 25 25 N 1.32987 * 119.06252 * 0.02562 * 19 18 17 26 26 C 1.31749 * 120.89391 * 359.97438 * 25 19 18 27 27 N 1.31757 * 121.88695 * 359.74119 * 26 25 19 28 28 H 1.09003 * 109.46775 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47359 * 300.00294 * 1 2 3 30 30 H 1.09001 * 109.46543 * 60.00806 * 1 2 3 31 31 H 1.09003 * 109.47234 * 239.99411 * 2 1 3 32 32 H 1.09001 * 109.47083 * 119.99735 * 2 1 3 33 33 H 0.97001 * 119.99416 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99474 * 264.99471 * 13 3 2 35 35 H 0.97001 * 119.99789 * 354.91499 * 16 14 13 36 36 H 1.07993 * 120.85818 * 359.95406 * 18 17 16 37 37 H 1.08995 * 109.46974 * 300.00560 * 21 20 19 38 38 H 1.09001 * 109.46885 * 60.00215 * 21 20 19 39 39 H 1.09000 * 109.46952 * 305.00587 * 22 21 20 40 40 H 1.09002 * 109.46656 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47277 * 299.99798 * 23 22 21 42 42 H 1.08991 * 109.47297 * 60.00223 * 23 22 21 43 43 H 1.09001 * 109.46928 * 60.00257 * 24 22 21 44 44 H 1.09003 * 109.46941 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.46997 * 299.99496 * 24 22 21 46 46 H 1.07999 * 119.05710 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2280 8 7 3.4059 0.3420 2.1757 9 14 6.0052 0.8739 1.3779 10 1 6.5993 1.5336 0.1876 11 1 6.4050 1.6105 2.6038 12 1 6.4916 -0.5267 1.4613 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3413 2.6319 -0.4323 16 7 0.0788 3.2672 -2.5186 17 6 -1.2125 3.7588 -2.6754 18 6 -1.6232 4.2883 -3.8952 19 6 -2.9237 4.7662 -4.0011 20 8 -3.3702 5.2906 -5.1685 21 6 -4.7199 5.7594 -5.1950 22 6 -5.0409 6.3114 -6.5854 23 6 -4.9866 5.1762 -7.6098 24 6 -6.4420 6.9260 -6.5791 25 7 -3.7241 4.7018 -2.9410 26 6 -3.2989 4.1933 -1.8024 27 7 -2.0753 3.7248 -1.6631 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8290 -0.0558 2.9527 34 1 2.2720 2.1230 -1.9978 35 1 0.7232 3.3582 -3.2380 36 1 -0.9484 4.3270 -4.7375 37 1 -5.3954 4.9349 -4.9669 38 1 -4.8453 6.5478 -4.4528 39 1 -4.3101 7.0754 -6.8506 40 1 -5.2158 5.5694 -8.6002 41 1 -3.9885 4.7383 -7.6143 42 1 -5.7173 4.4122 -7.3446 43 1 -6.4807 7.7347 -5.8493 44 1 -6.6709 7.3189 -7.5697 45 1 -7.1727 6.1619 -6.3139 46 1 -3.9741 4.1551 -0.9603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603114493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:25 Heat of formation + Delta-G solvation = -40.336669 kcal Electronic energy + Delta-G solvation = -26854.145341 eV Core-core repulsion = 22971.887280 eV Total energy + Delta-G solvation = -3882.258061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.39689 -41.06192 -39.70513 -37.41177 -36.35333 -35.99075 -34.35731 -33.35384 -32.74275 -31.74699 -28.91952 -28.03719 -27.66496 -25.48513 -25.32358 -24.37743 -22.47733 -21.44814 -21.22237 -20.18444 -19.94883 -18.47558 -18.12155 -17.45946 -17.15080 -16.80019 -16.55016 -16.39262 -16.15328 -15.85289 -15.64065 -15.13695 -14.99832 -14.87830 -14.53896 -14.17564 -13.98645 -13.60754 -13.51548 -13.16726 -13.02918 -12.84852 -12.73810 -12.64309 -12.26511 -12.14563 -12.04746 -12.03449 -11.85528 -11.68305 -11.57108 -11.54275 -11.26515 -11.01038 -10.52709 -10.39876 -10.09243 -9.86226 -9.52924 -8.14010 -6.30610 -0.06192 0.21224 1.31974 1.46063 1.48214 1.59035 1.98122 2.25712 2.43261 2.90520 3.04434 3.12719 3.16378 3.61508 3.81262 3.88244 3.89994 4.14539 4.18564 4.42279 4.51182 4.52685 4.57572 4.59952 4.68718 4.77458 4.80085 4.89101 4.99588 5.01435 5.08755 5.20144 5.24568 5.36860 5.40067 5.44921 5.49117 5.51564 5.62362 5.66734 5.83152 5.90480 6.10043 6.19081 6.28643 6.77583 7.06456 7.33249 7.38657 7.74334 8.91737 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033256 B = 0.002175 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.740188 B =12873.125622 C =13221.092354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.280 1.280 13 N -0.713 5.713 14 C 0.683 3.317 15 O -0.564 6.564 16 N -0.650 5.650 17 C 0.439 3.561 18 C -0.282 4.282 19 C 0.375 3.625 20 O -0.299 6.299 21 C 0.071 3.929 22 C -0.093 4.093 23 C -0.147 4.147 24 C -0.142 4.142 25 N -0.603 5.603 26 C 0.357 3.643 27 N -0.566 5.566 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.433 0.567 36 H 0.179 0.821 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 10.595 -19.957 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.367 5.367 14 C 0.382 3.618 15 O -0.438 6.438 16 N -0.301 5.301 17 C 0.200 3.800 18 C -0.309 4.309 19 C 0.189 3.811 20 O -0.204 6.204 21 C -0.004 4.004 22 C -0.112 4.112 23 C -0.204 4.204 24 C -0.200 4.200 25 N -0.337 5.337 26 C 0.068 3.932 27 N -0.291 5.291 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.273 0.727 36 H 0.197 0.803 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -15.297 10.403 -18.445 26.124 hybrid contribution 1.829 -0.107 -0.498 1.898 sum -13.468 10.296 -18.943 25.421 Atomic orbital electron populations 1.21614 0.97051 0.98728 1.00128 1.21809 0.93583 0.99299 1.01304 1.18282 0.93492 0.88754 0.80109 0.98171 1.21588 0.91237 1.38892 1.06573 0.90802 1.25754 1.03190 0.94488 0.95098 1.70061 1.36930 1.38504 1.09752 0.85323 0.79257 0.77716 0.78160 1.18366 1.21234 1.20598 1.45475 1.13909 1.58655 1.18648 1.16270 0.83411 0.79298 0.82816 1.91011 1.51838 1.62689 1.38235 1.42637 1.10765 1.58380 1.18280 1.18273 0.85355 0.87524 0.88832 1.21112 0.97493 1.12843 0.99442 1.19759 0.89035 0.86900 0.85359 1.86191 1.32939 1.73183 1.28093 1.23004 0.79008 0.99160 0.99197 1.21207 0.99235 0.98582 0.92143 1.21831 1.01848 0.97811 0.98959 1.21760 0.94070 1.00886 1.03241 1.68192 1.38422 1.25595 1.01479 1.25094 0.89303 0.85220 0.93561 1.68545 1.05039 1.23304 1.32222 0.94019 0.95531 0.94238 0.93996 0.90939 0.92634 0.76262 0.72709 0.80341 0.91623 0.91473 0.90025 0.91144 0.93069 0.92694 0.91998 0.90566 0.92097 0.76233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.78 16 2 C -0.12 -5.90 5.45 30.60 0.17 -5.74 16 3 C 0.30 14.93 2.24 44.24 0.10 15.03 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.01 16 5 C -0.54 -28.05 8.73 25.60 0.22 -27.82 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.79 5.29 84.65 0.45 1.23 16 8 N -0.91 -51.73 11.31 21.45 0.24 -51.49 16 9 Si 0.97 41.47 29.54 68.60 2.03 43.49 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.71 -28.33 5.03 -461.44 -2.32 -30.65 16 14 C 0.68 26.97 7.09 179.06 1.27 28.24 16 15 O -0.56 -27.26 11.78 -3.94 -0.05 -27.31 16 16 N -0.65 -18.86 5.39 -321.90 -1.73 -20.60 16 17 C 0.44 13.16 7.45 132.85 0.99 14.15 16 18 C -0.28 -6.60 9.99 22.67 0.23 -6.37 16 19 C 0.37 9.14 7.52 84.69 0.64 9.78 16 20 O -0.30 -6.24 9.67 -88.47 -0.86 -7.10 16 21 C 0.07 1.18 4.72 71.98 0.34 1.52 16 22 C -0.09 -1.11 3.16 -10.79 -0.03 -1.14 16 23 C -0.15 -1.72 9.09 71.98 0.65 -1.07 16 24 C -0.14 -1.22 9.19 71.98 0.66 -0.56 16 25 N -0.60 -15.49 9.38 -313.03 -2.94 -18.42 16 26 C 0.36 9.91 12.28 180.91 2.22 12.13 16 27 N -0.57 -19.54 8.04 -197.55 -1.59 -21.12 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 30 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 3.97 5.96 -2.39 -0.01 3.95 16 33 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.40 13.01 8.56 -92.71 -0.79 12.22 16 35 H 0.43 8.46 8.74 -92.71 -0.81 7.65 16 36 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 38 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.05 0.72 7.82 -2.39 -0.02 0.70 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.22 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -70.12 377.82 0.70 -69.42 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.60 Total: 29.20 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 8.51 Total: 34.58 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -8.34 Total: -142.29 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.90 Total: -34.41 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -70.12 0.70 -69.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603114493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.082 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds