Wall clock time and date at job start Tue Mar 31 2020 13:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52990 * 109.47339 * 2 1 4 4 N 1.46507 * 109.47166 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.99853 * 263.15631 * 4 3 2 6 6 C 1.52999 * 109.47150 * 270.00276 * 5 4 3 7 7 C 1.53007 * 109.46848 * 175.00382 * 6 5 4 8 8 C 1.53004 * 109.46799 * 294.99688 * 6 5 4 9 9 C 1.34779 * 119.99818 * 83.16151 * 4 3 2 10 10 O 1.21366 * 119.99551 * 184.27407 * 9 4 3 11 11 C 1.49308 * 120.00037 * 4.26813 * 9 4 3 12 12 O 1.21399 * 120.00393 * 354.26539 * 11 9 4 13 13 N 1.34773 * 119.99566 * 174.26580 * 11 9 4 14 14 C 1.40293 * 120.00115 * 179.97438 * 13 11 9 15 15 C 1.40728 * 126.09628 * 359.97438 * 14 13 11 16 16 N 1.30878 * 108.37489 * 179.73445 * 15 14 13 17 17 N 1.40064 * 108.43508 * 0.44084 * 16 15 14 18 18 C 1.37294 * 126.05669 * 179.81041 * 17 16 15 19 19 H 1.08000 * 120.00074 * 179.69116 * 18 17 16 20 20 C 1.39006 * 119.99837 * 359.97246 * 18 17 16 21 21 N 1.31286 * 119.99941 * 359.72108 * 20 18 17 22 22 Si 1.86799 * 120.00261 * 179.71981 * 20 18 17 23 23 H 1.48507 * 109.46932 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47154 * 119.99682 * 22 20 18 25 25 H 1.48502 * 109.47535 * 240.00300 * 22 20 18 26 26 C 1.35791 * 126.10539 * 179.97438 * 14 13 11 27 27 H 1.09002 * 109.47065 * 59.99990 * 1 2 3 28 28 H 1.09001 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47303 * 300.00279 * 1 2 3 30 30 H 1.08998 * 109.46912 * 239.99571 * 2 1 3 31 31 H 1.09002 * 109.47065 * 120.00010 * 2 1 3 32 32 H 1.08998 * 109.47469 * 59.99911 * 3 2 1 33 33 H 1.09002 * 109.47050 * 300.00019 * 3 2 1 34 34 H 1.09007 * 109.46896 * 30.00324 * 5 4 3 35 35 H 1.08997 * 109.46868 * 150.00134 * 5 4 3 36 36 H 1.08995 * 109.47636 * 54.99984 * 6 5 4 37 37 H 1.08995 * 109.47328 * 59.99413 * 7 6 5 38 38 H 1.08995 * 109.47157 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.46679 * 299.99431 * 7 6 5 40 40 H 1.09000 * 109.46942 * 300.00170 * 8 6 5 41 41 H 1.08992 * 109.46973 * 60.00663 * 8 6 5 42 42 H 1.09005 * 109.46754 * 180.02562 * 8 6 5 43 43 H 0.97002 * 120.00446 * 0.02562 * 13 11 9 44 44 H 1.07995 * 125.80921 * 0.02562 * 15 14 13 45 45 H 0.96999 * 119.99623 * 179.97438 * 21 20 18 46 46 H 1.07996 * 126.24430 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.2381 1.5933 1.2588 6 6 4.4931 3.0781 1.5256 7 6 5.1473 3.2445 2.8987 8 6 5.4226 3.6377 0.4467 9 6 4.1784 1.3035 -1.1599 10 8 5.3896 1.2255 -1.1525 11 6 3.4344 1.2455 -2.4531 12 8 2.2207 1.2184 -2.4545 13 7 4.1103 1.2232 -3.6188 14 6 3.4114 1.1682 -4.8340 15 6 2.0127 1.1311 -4.9850 16 7 1.7367 1.0896 -6.2637 17 7 2.9421 1.0882 -6.9771 18 6 3.0725 1.0469 -8.3432 19 1 4.0546 1.0551 -8.7925 20 6 1.9403 1.0006 -9.1484 21 7 0.7464 0.9908 -8.6023 22 14 2.1174 0.9524 -11.0073 23 1 3.5578 0.9720 -11.3680 24 1 1.4931 -0.2887 -11.5320 25 1 1.4422 2.1349 -11.5999 26 6 3.9636 1.1412 -6.0743 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.6492 1.1735 2.0744 35 1 5.1904 1.0676 1.1901 36 1 3.5469 3.6187 1.5060 37 1 6.0936 2.7039 2.9182 38 1 5.3295 4.3022 3.0886 39 1 4.4852 2.8458 3.6672 40 1 6.3689 3.0972 0.4664 41 1 4.9566 3.5192 -0.5314 42 1 5.6047 4.6955 0.6371 43 1 5.0801 1.2445 -3.6178 44 1 1.2900 1.1406 -4.1825 45 1 -0.0436 0.9589 -9.1642 46 1 5.0187 1.1578 -6.3039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746378621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:50 Heat of formation + Delta-G solvation = 11.729603 kcal Electronic energy + Delta-G solvation = -27793.180719 eV Core-core repulsion = 23913.180422 eV Total energy + Delta-G solvation = -3880.000298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79697 -39.61914 -38.10747 -36.89006 -35.32136 -34.15864 -33.16671 -32.42120 -30.32572 -28.17015 -27.32950 -27.26535 -26.22214 -25.03509 -23.21092 -21.73585 -21.09270 -20.43056 -19.52520 -19.30280 -17.71367 -17.26182 -16.81176 -15.93567 -15.54086 -15.25330 -15.13825 -14.84864 -14.71880 -14.40031 -14.06973 -13.63112 -13.48895 -13.29369 -13.02189 -12.99962 -12.89917 -12.44555 -12.11876 -12.09509 -11.87696 -11.73243 -11.54510 -11.42680 -11.31315 -11.20683 -11.09036 -10.97770 -10.85670 -10.71940 -10.65553 -10.53257 -10.18172 -9.23517 -8.95827 -8.86861 -8.61194 -8.13114 -6.77284 -6.61107 -4.28029 1.69436 2.57181 2.92019 3.03548 3.09237 3.32711 3.68616 3.71312 3.86478 4.37167 4.52820 4.64274 4.71105 4.83743 4.97590 4.98192 5.03197 5.12667 5.23668 5.36652 5.41641 5.46017 5.52464 5.62398 5.71850 5.74693 5.81411 5.90822 5.95043 6.04886 6.15187 6.19379 6.24976 6.27623 6.35456 6.36388 6.51538 6.77069 6.88673 6.99422 7.16322 7.17960 7.74187 7.84820 8.12880 8.18773 8.50493 8.70199 9.30976 9.59805 10.34743 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021726 B = 0.002818 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.472782 B = 9933.846364 C =10855.592310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.094 3.906 4 N -0.585 5.585 5 C 0.116 3.884 6 C -0.113 4.113 7 C -0.143 4.143 8 C -0.141 4.141 9 C 0.514 3.486 10 O -0.528 6.528 11 C 0.482 3.518 12 O -0.513 6.513 13 N -0.584 5.584 14 C -0.068 4.068 15 C -0.026 4.026 16 N -0.261 5.261 17 N -0.139 5.139 18 C -0.321 4.321 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.935 3.065 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.078 4.078 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.408 0.592 44 H 0.178 0.822 45 H 0.275 0.725 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 1.991 17.792 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.028 4.028 4 N -0.318 5.318 5 C -0.006 4.006 6 C -0.132 4.132 7 C -0.201 4.201 8 C -0.198 4.198 9 C 0.297 3.703 10 O -0.404 6.404 11 C 0.263 3.737 12 O -0.391 6.391 13 N -0.227 5.227 14 C -0.174 4.174 15 C -0.202 4.202 16 N -0.091 5.091 17 N 0.094 4.906 18 C -0.454 4.454 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.759 3.241 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.229 4.229 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.243 0.757 44 H 0.195 0.805 45 H 0.086 0.914 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.298 1.875 16.851 17.272 hybrid contribution 1.264 -0.007 -0.099 1.268 sum 4.562 1.868 16.752 17.462 Atomic orbital electron populations 1.21626 0.95040 1.01656 1.01935 1.21794 0.96466 0.96728 1.01864 1.22297 0.77431 0.98258 1.04789 1.47799 1.07905 1.70199 1.05896 1.21671 0.97940 0.96266 0.84752 1.21525 0.99734 0.96146 0.95813 1.21763 1.00723 1.01917 0.95718 1.21810 0.99696 1.00026 0.98305 1.20253 0.87340 0.77327 0.85385 1.90718 1.13648 1.48843 1.87197 1.19692 0.87771 0.81614 0.84581 1.90548 1.13048 1.49538 1.85976 1.42182 1.09888 1.67209 1.03378 1.17250 0.92010 1.24810 0.83294 1.24139 0.93163 1.07401 0.95486 1.78258 1.03415 1.25759 1.01711 1.44560 1.02550 1.38512 1.04949 1.19962 0.95547 1.53064 0.76791 0.86436 1.25662 0.94556 0.95400 1.01512 1.70217 0.97834 1.35011 1.36334 0.85748 0.79363 0.78514 0.80448 1.18632 1.19868 1.19867 1.21309 0.94066 1.19339 0.88231 0.91689 0.92860 0.93281 0.91139 0.93039 0.91364 0.86243 0.90330 0.89586 0.91030 0.92435 0.92407 0.92668 0.92088 0.92904 0.93203 0.75728 0.80528 0.91433 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 37.16 0.37 -1.20 16 2 C -0.13 -1.54 5.76 -26.74 -0.15 -1.69 16 3 C 0.09 1.10 4.99 -4.04 -0.02 1.08 16 4 N -0.59 -7.29 2.38 -174.25 -0.41 -7.70 16 5 C 0.12 1.16 4.97 -4.04 -0.02 1.14 16 6 C -0.11 -1.04 3.13 -90.61 -0.28 -1.32 16 7 C -0.14 -1.03 9.19 37.16 0.34 -0.68 16 8 C -0.14 -1.56 8.02 37.16 0.30 -1.26 16 9 C 0.51 7.85 6.11 -11.65 -0.07 7.78 16 10 O -0.53 -8.61 14.63 5.48 0.08 -8.53 16 11 C 0.48 8.53 7.63 -11.65 -0.09 8.44 16 12 O -0.51 -9.64 9.01 5.45 0.05 -9.59 16 13 N -0.58 -10.91 5.45 -10.45 -0.06 -10.97 16 14 C -0.07 -1.54 6.90 -83.92 -0.58 -2.12 16 15 C -0.03 -0.66 10.85 -17.02 -0.18 -0.85 16 16 N -0.26 -7.38 10.39 30.81 0.32 -7.06 16 17 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 18 C -0.32 -8.37 10.25 -14.82 -0.15 -8.52 16 19 H 0.12 2.75 7.83 -52.49 -0.41 2.33 16 20 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.03 11.81 55.50 0.66 -20.38 16 22 Si 0.94 18.65 29.55 -169.99 -5.02 13.63 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.03 7.06 -51.93 -0.37 0.66 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 33 H 0.12 1.68 5.37 -51.93 -0.28 1.40 16 34 H 0.08 0.63 8.07 -51.92 -0.42 0.21 16 35 H 0.09 0.94 7.37 -51.93 -0.38 0.56 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 41 H 0.05 0.70 6.14 -51.93 -0.32 0.38 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.41 6.69 8.31 -40.82 -0.34 6.35 16 44 H 0.18 4.29 5.92 -52.49 -0.31 3.98 16 45 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.15 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -30.63 374.76 -6.64 -37.27 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.02 Total: 11.61 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.83 Total: -0.13 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.46 Total: -49.90 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.13 Total: -18.12 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.63 -6.64 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746378621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.995 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds