Wall clock time and date at job start Tue Mar 31 2020 13:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52990 * 109.47339 * 2 1 4 4 N 1.46507 * 109.47166 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.99853 * 263.15631 * 4 3 2 6 6 C 1.52999 * 109.47150 * 270.00276 * 5 4 3 7 7 C 1.53007 * 109.46848 * 175.00382 * 6 5 4 8 8 C 1.53004 * 109.46799 * 294.99688 * 6 5 4 9 9 C 1.34779 * 119.99818 * 83.16151 * 4 3 2 10 10 O 1.21366 * 119.99551 * 184.27407 * 9 4 3 11 11 C 1.49308 * 120.00037 * 4.26813 * 9 4 3 12 12 O 1.21399 * 120.00393 * 354.26539 * 11 9 4 13 13 N 1.34773 * 119.99566 * 174.26580 * 11 9 4 14 14 C 1.40293 * 120.00115 * 179.97438 * 13 11 9 15 15 C 1.40728 * 126.09628 * 359.97438 * 14 13 11 16 16 N 1.30878 * 108.37489 * 179.73445 * 15 14 13 17 17 N 1.40064 * 108.43508 * 0.44084 * 16 15 14 18 18 C 1.37294 * 126.05669 * 179.81041 * 17 16 15 19 19 H 1.08000 * 120.00074 * 179.69116 * 18 17 16 20 20 C 1.39006 * 119.99837 * 359.97246 * 18 17 16 21 21 N 1.31286 * 119.99941 * 359.72108 * 20 18 17 22 22 Si 1.86799 * 120.00261 * 179.71981 * 20 18 17 23 23 H 1.48507 * 109.46932 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47154 * 119.99682 * 22 20 18 25 25 H 1.48502 * 109.47535 * 240.00300 * 22 20 18 26 26 C 1.35791 * 126.10539 * 179.97438 * 14 13 11 27 27 H 1.09002 * 109.47065 * 59.99990 * 1 2 3 28 28 H 1.09001 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47303 * 300.00279 * 1 2 3 30 30 H 1.08998 * 109.46912 * 239.99571 * 2 1 3 31 31 H 1.09002 * 109.47065 * 120.00010 * 2 1 3 32 32 H 1.08998 * 109.47469 * 59.99911 * 3 2 1 33 33 H 1.09002 * 109.47050 * 300.00019 * 3 2 1 34 34 H 1.09007 * 109.46896 * 30.00324 * 5 4 3 35 35 H 1.08997 * 109.46868 * 150.00134 * 5 4 3 36 36 H 1.08995 * 109.47636 * 54.99984 * 6 5 4 37 37 H 1.08995 * 109.47328 * 59.99413 * 7 6 5 38 38 H 1.08995 * 109.47157 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.46679 * 299.99431 * 7 6 5 40 40 H 1.09000 * 109.46942 * 300.00170 * 8 6 5 41 41 H 1.08992 * 109.46973 * 60.00663 * 8 6 5 42 42 H 1.09005 * 109.46754 * 180.02562 * 8 6 5 43 43 H 0.97002 * 120.00446 * 0.02562 * 13 11 9 44 44 H 1.07995 * 125.80921 * 0.02562 * 15 14 13 45 45 H 0.96999 * 119.99623 * 179.97438 * 21 20 18 46 46 H 1.07996 * 126.24430 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.2381 1.5933 1.2588 6 6 4.4931 3.0781 1.5256 7 6 5.1473 3.2445 2.8987 8 6 5.4226 3.6377 0.4467 9 6 4.1784 1.3035 -1.1599 10 8 5.3896 1.2255 -1.1525 11 6 3.4344 1.2455 -2.4531 12 8 2.2207 1.2184 -2.4545 13 7 4.1103 1.2232 -3.6188 14 6 3.4114 1.1682 -4.8340 15 6 2.0127 1.1311 -4.9850 16 7 1.7367 1.0896 -6.2637 17 7 2.9421 1.0882 -6.9771 18 6 3.0725 1.0469 -8.3432 19 1 4.0546 1.0551 -8.7925 20 6 1.9403 1.0006 -9.1484 21 7 0.7464 0.9908 -8.6023 22 14 2.1174 0.9524 -11.0073 23 1 3.5578 0.9720 -11.3680 24 1 1.4931 -0.2887 -11.5320 25 1 1.4422 2.1349 -11.5999 26 6 3.9636 1.1412 -6.0743 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.6492 1.1735 2.0744 35 1 5.1904 1.0676 1.1901 36 1 3.5469 3.6187 1.5060 37 1 6.0936 2.7039 2.9182 38 1 5.3295 4.3022 3.0886 39 1 4.4852 2.8458 3.6672 40 1 6.3689 3.0972 0.4664 41 1 4.9566 3.5192 -0.5314 42 1 5.6047 4.6955 0.6371 43 1 5.0801 1.2445 -3.6178 44 1 1.2900 1.1406 -4.1825 45 1 -0.0436 0.9589 -9.1642 46 1 5.0187 1.1578 -6.3039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746378621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:49 Heat of formation + Delta-G solvation = -6.997308 kcal Electronic energy + Delta-G solvation = -27793.992779 eV Core-core repulsion = 23913.180422 eV Total energy + Delta-G solvation = -3880.812358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.17885 -41.33560 -39.54439 -37.99451 -36.34910 -35.69010 -34.92525 -33.38901 -32.28405 -29.91615 -28.37422 -28.01445 -27.38484 -26.73543 -24.53769 -22.91344 -22.71157 -21.60988 -21.23716 -20.46487 -19.39366 -18.63112 -18.00554 -17.45514 -17.13932 -16.79221 -16.45399 -15.89216 -15.72076 -15.66432 -15.51763 -15.08822 -14.94435 -14.83674 -14.30464 -14.14398 -13.83137 -13.52392 -13.40811 -13.16631 -13.07995 -12.94114 -12.86684 -12.82065 -12.69545 -12.40624 -12.17788 -12.03453 -12.01815 -11.92643 -11.80595 -11.59642 -11.49221 -11.05119 -10.85902 -10.23214 -10.13123 -9.72426 -8.59653 -8.48927 -6.25947 0.34011 1.28438 1.32556 1.42116 1.59415 1.72279 2.06359 2.10839 2.47628 2.55613 2.86022 3.07552 3.45394 3.87880 3.94629 4.02665 4.17067 4.20014 4.39743 4.44694 4.51598 4.54031 4.59559 4.65652 4.79562 4.84731 4.86484 4.95743 4.97159 4.98324 4.99878 5.07045 5.15294 5.20861 5.23429 5.27488 5.35787 5.39670 5.44624 5.51589 5.55748 5.92077 6.01931 6.23597 6.44099 6.68534 6.81145 7.11979 7.41735 7.64164 8.50461 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021726 B = 0.002818 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.472782 B = 9933.846364 C =10855.592310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.094 3.906 4 N -0.573 5.573 5 C 0.113 3.887 6 C -0.108 4.108 7 C -0.138 4.138 8 C -0.140 4.140 9 C 0.518 3.482 10 O -0.539 6.539 11 C 0.481 3.519 12 O -0.522 6.522 13 N -0.587 5.587 14 C -0.053 4.053 15 C -0.045 4.045 16 N -0.307 5.307 17 N -0.164 5.164 18 C -0.353 4.353 19 H 0.140 0.860 20 C -0.005 4.005 21 N -0.820 5.820 22 Si 1.019 2.981 23 H -0.243 1.243 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.078 4.078 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.420 0.580 44 H 0.178 0.822 45 H 0.277 0.723 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 2.229 19.616 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.027 4.027 4 N -0.305 5.305 5 C -0.009 4.009 6 C -0.128 4.128 7 C -0.196 4.196 8 C -0.197 4.197 9 C 0.300 3.700 10 O -0.417 6.417 11 C 0.263 3.737 12 O -0.400 6.400 13 N -0.232 5.232 14 C -0.159 4.159 15 C -0.221 4.221 16 N -0.139 5.139 17 N 0.068 4.932 18 C -0.484 4.484 19 H 0.157 0.843 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.165 1.165 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.229 4.229 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.257 0.743 44 H 0.195 0.805 45 H 0.087 0.913 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.527 2.119 18.738 19.393 hybrid contribution 0.905 -0.058 -0.425 1.002 sum 5.432 2.060 18.312 19.212 Atomic orbital electron populations 1.21599 0.94303 1.01946 1.02100 1.21737 0.97089 0.96454 1.01105 1.22299 0.76835 0.98325 1.05266 1.47893 1.08365 1.68380 1.05838 1.21950 0.97874 0.97075 0.83955 1.21510 0.99638 0.95257 0.96367 1.21722 1.00872 1.02439 0.94547 1.21794 0.99504 1.00776 0.97664 1.19721 0.86977 0.78111 0.85176 1.90717 1.13826 1.49996 1.87199 1.20349 0.87854 0.80120 0.85359 1.90565 1.13876 1.49105 1.86475 1.42143 1.10376 1.68236 1.02443 1.17282 0.91233 1.22609 0.84778 1.24253 0.94628 1.08275 0.94921 1.78150 1.05345 1.27414 1.02976 1.44823 1.02747 1.39918 1.05732 1.20660 0.96976 1.53813 0.76934 0.84285 1.26862 0.93760 0.94096 1.06971 1.70380 0.98949 1.36945 1.38546 0.84539 0.80267 0.78263 0.73165 1.16531 1.19700 1.19676 1.21978 0.95264 1.17746 0.87916 0.93873 0.92574 0.90712 0.94601 0.90983 0.87780 0.88850 0.87141 0.90393 0.90563 0.92481 0.91929 0.90915 0.92969 0.95595 0.92247 0.74328 0.80526 0.91271 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.91 71.98 0.71 -2.18 16 2 C -0.13 -2.79 5.76 30.59 0.18 -2.62 16 3 C 0.09 2.04 4.99 86.37 0.43 2.48 16 4 N -0.57 -13.31 2.38 -823.56 -1.96 -15.27 16 5 C 0.11 1.92 4.97 86.38 0.43 2.35 16 6 C -0.11 -1.70 3.13 -10.79 -0.03 -1.73 16 7 C -0.14 -1.51 9.19 71.98 0.66 -0.85 16 8 C -0.14 -2.92 8.02 71.98 0.58 -2.34 16 9 C 0.52 15.55 6.11 87.22 0.53 16.08 16 10 O -0.54 -17.26 14.63 -3.30 -0.05 -17.31 16 11 C 0.48 17.21 7.63 87.23 0.67 17.88 16 12 O -0.52 -20.19 9.01 -3.40 -0.03 -20.22 16 13 N -0.59 -22.05 5.45 -305.33 -1.66 -23.72 16 14 C -0.05 -2.44 6.90 37.83 0.26 -2.18 16 15 C -0.05 -2.39 10.85 85.44 0.93 -1.46 16 16 N -0.31 -18.16 10.39 -56.43 -0.59 -18.75 16 17 N -0.16 -9.07 3.73 -189.98 -0.71 -9.78 16 18 C -0.35 -18.61 10.25 84.02 0.86 -17.75 16 19 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 20 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 21 N -0.82 -46.69 11.81 21.66 0.26 -46.43 16 22 Si 1.02 38.34 29.55 68.60 2.03 40.36 16 23 H -0.24 -8.23 7.11 99.48 0.71 -7.53 16 24 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 26 C -0.08 -3.67 11.50 83.41 0.96 -2.72 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.04 1.04 7.06 -2.39 -0.02 1.03 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.56 8.02 -2.39 -0.02 1.55 16 33 H 0.09 2.60 5.37 -2.46 -0.01 2.59 16 34 H 0.11 1.25 8.07 -2.38 -0.02 1.23 16 35 H 0.08 1.53 7.37 -2.39 -0.02 1.51 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 41 H 0.02 0.66 6.14 -2.39 -0.01 0.65 16 42 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.42 13.61 8.31 -92.71 -0.77 12.84 16 44 H 0.18 9.05 5.92 -2.91 -0.02 9.04 16 45 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 46 H 0.18 6.99 8.06 -2.91 -0.02 6.97 16 Total: -1.00 -70.10 374.76 5.14 -64.96 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: 0.22 Total: 40.96 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 7.63 Total: 5.18 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -4.66 Total: -113.95 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.08 Total: -37.52 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.36 kcal Total: -70.10 5.14 -64.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746378621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.964 kcal (2) G-P(sol) polarization free energy of solvation -70.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds